Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,725,633 |
T→C |
L456L (CTA→CTG) |
xylB ← |
xylulokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,725,633 | 0 | T | C | 100.0%
| 381.9
/ NA
| 120 | L456L (CTA→CTG) | xylB | xylulokinase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (88/32); total (88/32) |
Only 100 of 126 total aligned reads displayed.
CGTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCC > NC_000913/3725543‑3725722
|
cGTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAg > 2:723482/1‑93 (MQ=255)
gTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGa > 2:538422/1‑93 (MQ=255)
gTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGa < 2:3836300/93‑1 (MQ=255)
gTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGa > 2:278641/1‑93 (MQ=255)
tttACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGAt > 2:808977/1‑93 (MQ=255)
tttACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGAt > 2:2017084/1‑93 (MQ=255)
ttACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATg > 1:1228670/1‑93 (MQ=255)
ttACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATg > 2:3347901/1‑93 (MQ=255)
cGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGa > 1:1138709/1‑93 (MQ=255)
gCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAc > 1:1007244/1‑93 (MQ=255)
gCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAc > 1:3606428/1‑93 (MQ=255)
gCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAc < 1:4418946/93‑1 (MQ=255)
gCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAc < 2:3331135/93‑1 (MQ=255)
gCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGATTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAc > 1:2326174/1‑93 (MQ=255)
ccATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATATGGCAGATGCGACt > 2:3317882/1‑93 (MQ=255)
aTTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGt > 2:3035013/1‑93 (MQ=255)
aTTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGt > 2:2719900/1‑93 (MQ=255)
tAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTc < 1:4594080/93‑1 (MQ=255)
tAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTc > 1:1069973/1‑93 (MQ=255)
aaTGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCt > 1:23953/1‑93 (MQ=255)
aTGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTa > 2:3585209/1‑93 (MQ=255)
aTGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTa > 1:434119/1‑93 (MQ=255)
tGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTaa > 1:3006379/1‑93 (MQ=255)
ggCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAAc < 2:4592331/93‑1 (MQ=255)
cAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACgg > 2:411877/1‑93 (MQ=255)
gAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTa < 1:545522/93‑1 (MQ=255)
aaGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAg > 2:2808920/1‑93 (MQ=255)
gCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCg > 1:871726/1‑93 (MQ=255)
tGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGc > 1:2570942/1‑93 (MQ=255)
tGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGGAGTTGCGGc > 2:2571597/1‑93 (MQ=255)
gATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGGGACTGTTCTAACGGTAGTTGCGGca > 2:2594906/1‑93 (MQ=255)
aTAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGcaa > 2:2405023/1‑93 (MQ=255)
tAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGcaac > 1:527868/1‑93 (MQ=255)
gagGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGGGGcaacaa > 2:1134256/1‑93 (MQ=255)
gagGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGcaacaa > 2:4282239/1‑93 (MQ=255)
agGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAAt < 1:395333/93‑1 (MQ=255)
agGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAAt > 2:3370520/1‑93 (MQ=255)
agGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAAt < 1:548489/93‑1 (MQ=255)
ggCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAAtt > 1:3146227/1‑93 (MQ=255)
ggCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCACAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTACTTGCGGcaacaaat > 1:144428/1‑91 (MQ=255)
cGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCa > 2:2632394/1‑93 (MQ=255)
cGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATg < 2:1481909/93‑1 (MQ=255)
cGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATg < 2:165354/93‑1 (MQ=255)
cGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATg > 1:2793675/1‑93 (MQ=255)
ggAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGa > 1:2204016/1‑93 (MQ=255)
gAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAg > 1:2784358/1‑93 (MQ=255)
gAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAg > 2:1333584/1‑93 (MQ=255)
aaCGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCCGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGc < 1:633581/93‑1 (MQ=255)
aCGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCg > 1:1756718/1‑93 (MQ=255)
aCGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGGTCTAACGGTAGTTGCCGCGACAAATAAATGaaca > 2:1909770/1‑90 (MQ=255)
cGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGa > 2:779971/1‑93 (MQ=255)
gTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGAt > 1:2746109/1‑93 (MQ=255)
tttCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGAtt < 2:3116824/93‑1 (MQ=255)
ttCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGAttt > 2:4309732/1‑93 (MQ=255)
ttCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGAttt < 1:1981308/93‑1 (MQ=255)
tcgtcgTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTtctc > 2:1758138/1‑93 (MQ=255)
tcgtcgTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTtctc > 1:2584967/1‑93 (MQ=255)
tcgtcgTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTtctc < 1:1076808/93‑1 (MQ=255)
gtcgtGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTg < 1:295619/93‑1 (MQ=255)
gtcgtGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTg > 1:2098853/1‑93 (MQ=255)
tcgtGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTgg > 2:2469856/1‑93 (MQ=255)
tcgtGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTgg < 1:2624798/93‑1 (MQ=255)
cgtGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGa < 2:4123938/93‑1 (MQ=255)
cgtGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGa > 2:4384589/1‑93 (MQ=255)
tGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGAtt < 2:3473849/93‑1 (MQ=255)
tGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTcgcc > 2:2136572/1‑93 (MQ=255)
tGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTcgcc > 1:3800308/1‑93 (MQ=255)
gATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGGTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTcgccg > 2:2858300/1‑93 (MQ=255)
aGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGAt < 2:482138/93‑1 (MQ=255)
ggCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTg > 2:3679474/1‑93 (MQ=255)
gCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTTGATTCGCCGCGATCTgc > 1:1719672/1‑93 (MQ=255)
gCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTgc > 1:1261940/1‑93 (MQ=255)
gCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTgc < 1:1426600/93‑1 (MQ=255)
aTAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTgcgc > 2:518761/1‑93 (MQ=255)
aTAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTgcgc > 1:4490161/1‑93 (MQ=255)
tAACGCTGCGGATCCTGCAGATGCGACTGTTCTAACGGCAGGTGCGGCAACAATTCAATGAGCGATTTCTCTGTATTCGCCGCGATCTGCGcc > 2:2949598/1‑93 (MQ=255)
tAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGcc > 2:179144/1‑93 (MQ=255)
tAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGcc > 2:2329413/1‑93 (MQ=255)
tAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGcc < 1:2090477/93‑1 (MQ=255)
aaCGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCa > 2:553208/1‑93 (MQ=255)
aaCGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCa > 2:1229515/1‑93 (MQ=255)
aCGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAg > 1:616782/1‑93 (MQ=255)
gCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGcc > 1:4287051/1‑93 (MQ=255)
cTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCt < 1:117893/93‑1 (MQ=255)
tGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCtt < 1:1903663/93‑1 (MQ=255)
tGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCtt > 2:2500819/1‑93 (MQ=255)
gcgcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtg > 1:3722403/1‑93 (MQ=255)
cgcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgc > 2:1912256/1‑93 (MQ=255)
cgcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgc > 1:944218/1‑93 (MQ=255)
cgcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgc < 1:462016/93‑1 (MQ=255)
cgcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgc < 1:2192289/93‑1 (MQ=255)
gcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgct > 2:3670122/1‑93 (MQ=255)
gcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgct > 2:2856335/1‑93 (MQ=255)
gcATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgct > 2:157796/1‑93 (MQ=255)
cATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgctg > 1:1125906/1‑93 (MQ=255)
cATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgctg < 1:2489177/93‑1 (MQ=255)
aTCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgctgc > 2:3888134/1‑93 (MQ=255)
aTCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTtgctgc < 1:4065557/93‑1 (MQ=255)
tCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTgcg > 1:785617/1‑93 (MQ=255)
tGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGcc > 1:4365218/1‑93 (MQ=255)
|
CGTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCC > NC_000913/3725543‑3725722
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACGTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCA > NC_000913/3725541‑3725724
|
AACGTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCA > SRR4302535.2994102/1‑94 (MQ=60)
TTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATG > SRR4302535.1237449/1‑94 (MQ=60)
ACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGA > SRR4302535.1146826/1‑94 (MQ=60)
CGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAC > SRR4302535.1014402/1‑94 (MQ=60)
CGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAC > SRR4302535.3631448/1‑94 (MQ=60)
CGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGATTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGAC > SRR4302535.2342817/1‑94 (MQ=60)
GCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACT < SRR4302535.4449202/94‑1 (MQ=60)
GCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACT > SRR4302535.547089/1‑94 (MQ=60)
CCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTG > SRR4302535.3738552/1‑94 (MQ=60)
TTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTC > SRR4302535.1077578/1‑94 (MQ=60)
TAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCT < SRR4302535.4625345/94‑1 (MQ=60)
TAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCT > SRR4302535.24140/1‑94 (MQ=60)
AATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTA > SRR4302535.437142/1‑94 (MQ=60)
ATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAA > SRR4302535.4488600/1‑94 (MQ=60)
ATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAA > SRR4302535.3027442/1‑94 (MQ=60)
GAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAG < SRR4302535.549335/94‑1 (MQ=60)
AAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGT > SRR4302535.4038126/1‑94 (MQ=60)
TGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCG > SRR4302535.877902/1‑94 (MQ=60)
CTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGC > SRR4302535.2589424/1‑94 (MQ=60)
ATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAAC > SRR4302535.531554/1‑94 (MQ=60)
AGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATT < SRR4302535.552320/94‑1 (MQ=60)
AGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATT < SRR4302535.398103/94‑1 (MQ=60)
AGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATT > SRR4302535.3168105/1‑94 (MQ=60)
AGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCACAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTACTTGCGGCAACAAAT > SRR4302535.145435/1‑94 (MQ=60)
GGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTC < SRR4302535.769020/94‑1 (MQ=60)
ACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATG > SRR4302535.2813553/1‑94 (MQ=60)
CGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGA > SRR4302535.2219718/1‑94 (MQ=60)
GGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAG > SRR4302535.2869257/1‑94 (MQ=60)
GGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAG > SRR4302535.2804172/1‑94 (MQ=60)
AACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCG > SRR4302535.1769418/1‑94 (MQ=60)
AACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCCGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCG < SRR4302535.637997/94‑1 (MQ=60)
CGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGAT > SRR4302535.2765682/1‑94 (MQ=60)
GTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATT > SRR4302535.1896582/1‑94 (MQ=60)
TTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTC < SRR4302535.1995574/94‑1 (MQ=60)
CTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTC > SRR4302535.2603532/1‑94 (MQ=60)
CTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAACGAGCGGTTTCTC > SRR4302535.4121563/1‑94 (MQ=60)
TCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCT < SRR4302535.1084465/94‑1 (MQ=60)
CGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTG > SRR4302535.2113991/1‑94 (MQ=60)
GTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGG < SRR4302535.297681/94‑1 (MQ=60)
TCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGA < SRR4302535.2643611/94‑1 (MQ=60)
GTGGCTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATT > SRR4302535.1134986/1‑94 (MQ=60)
CTGATAAGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCC > SRR4302535.3826504/1‑94 (MQ=60)
AGCGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATC > SRR4302535.1405387/1‑94 (MQ=60)
CGGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTG > SRR4302535.219898/1‑94 (MQ=60)
GGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTTGATTCGCCGCGATCTGC > SRR4302535.1732111/1‑94 (MQ=60)
GGCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGC > SRR4302535.1270969/1‑94 (MQ=60)
GCATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCG < SRR4302535.1436782/94‑1 (MQ=60)
CATAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGC > SRR4302535.4520983/1‑94 (MQ=60)
TAACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCA < SRR4302535.2105542/94‑1 (MQ=60)
AACGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAG > SRR4302535.621073/1‑94 (MQ=60)
CGCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCC > SRR4302535.4316377/1‑94 (MQ=60)
GCTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCT > SRR4302535.2436330/1‑94 (MQ=60)
CTGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTT < SRR4302535.118722/94‑1 (MQ=60)
TGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTG > SRR4302535.3748190/1‑94 (MQ=60)
TGCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTG < SRR4302535.1917364/94‑1 (MQ=60)
GCGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGC > SRR4302535.950901/1‑94 (MQ=60)
CGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCT < SRR4302535.465244/94‑1 (MQ=60)
CGCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCT < SRR4302535.2207887/94‑1 (MQ=60)
GCATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTG > SRR4302535.1133943/1‑94 (MQ=60)
CATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGC < SRR4302535.2507127/94‑1 (MQ=60)
ATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCG < SRR4302535.4093376/94‑1 (MQ=60)
ATCTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCG > SRR4302535.791125/1‑94 (MQ=60)
CTGGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCC > SRR4302535.4395089/1‑94 (MQ=60)
TGGCAGATGCGACTGTTCTAACGGTAGTGGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCC < SRR4302535.2739330/94‑1 (MQ=60)
GGCAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCGCA > SRR4302535.1041885/1‑94 (MQ=60)
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AACGTTTACGCCATTAATGGCAGAAGTTGCTGATAGAGGCGACGGAACGTTTCTCGTCGTGGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCA > NC_000913/3725541‑3725724
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
