Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,725,747 |
(C)8→9 |
coding (1254/1455 nt) |
xylB ← |
xylulokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,725,739 | 1 | . | C | 85.9%
| 170.4
/ 24.7
| 64 | coding (1262/1455 nt) | xylB | xylulokinase |
| Reads supporting (aligned to +/- strand): ref base . (2/7); new base C (27/28); total (29/35) |
| Fisher's exact test for biased strand distribution p-value = 1.66e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.85e-01 |
CTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCC > NC_000913/3725647‑3725821
|
cTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑t > 1:3287730/1‑93 (MQ=255)
cTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑t < 1:723482/93‑1 (MQ=255)
tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑c > 2:1673349/1‑93 (MQ=255)
tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑c > 2:2932576/1‑93 (MQ=255)
tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑c > 2:3299266/1‑93 (MQ=255)
tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCAGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑c > 1:1327921/1‑93 (MQ=255)
aaCGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑cc > 2:2957500/1‑93 (MQ=255)
aCGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCCGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccc > 1:2961727/1‑93 (MQ=255)
aCGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccc > 2:657433/1‑93 (MQ=255)
cGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑cccc > 1:1915957/1‑93 (MQ=255)
cGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑cccc > 2:147920/1‑93 (MQ=255)
gTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑c > 1:1845408/1‑93 (MQ=255)
gTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑c < 2:3068541/93‑1 (MQ=255)
gTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑c > 1:1893691/1‑93 (MQ=255)
gTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑c > 1:2181050/1‑93 (MQ=255)
gTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑cccc < 2:3767173/93‑2 (MQ=255)
gTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑cccc > 1:2037365/1‑92 (MQ=255)
gTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑C‑‑ccccc‑‑cccc > 2:3363473/1‑92 (MQ=255)
ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑ccccc > 2:4115099/1‑91 (MQ=255)
ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑ACC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑ccccc > 1:373255/1‑91 (MQ=255)
gCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑ccccc‑‑cccccgt < 1:3779792/93‑5 (MQ=255)
aacaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCCTACGGTa > 1:106043/1‑93 (MQ=255)
acaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTa > 2:4437149/1‑93 (MQ=255)
acaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCCCCAGCCTTGCTGCGCCCAGTTCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTa < 1:4136195/93‑1 (MQ=255)
ttCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGa < 2:3188259/93‑1 (MQ=255)
ttCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCCTACGGTAATTGa > 2:380092/1‑93 (MQ=255)
ttCAATGAGCGATATCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGa < 1:2678715/93‑1 (MQ=255)
aaTGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAgc > 2:2229547/1‑93 (MQ=255)
aaTGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAgc < 1:4018573/93‑1 (MQ=255)
aaTGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAgct > 1:3132106/1‑93 (MQ=255)
tGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGCACGGTAATCGAgctg > 1:1070663/1‑93 (MQ=255)
tGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCCCACAGTAATCGAgctg > 2:755066/1‑93 (MQ=255)
gAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAgctgc > 1:4649719/1‑93 (MQ=255)
gCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGCACTCGAGCTGCTGa > 2:1924927/1‑93 (MQ=255)
gATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGGAATCGAGCGGCTGAc > 2:610587/1‑93 (MQ=255)
gATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGGACGGGAATCGGGCTGCTGAc > 2:461662/1‑93 (MQ=255)
tttCTCTGGATTCGCCGCGATCGGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGc < 2:1254102/93‑1 (MQ=255)
tctcTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCt > 2:802756/1‑93 (MQ=255)
ctctGGCTTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTg < 1:1847185/93‑1 (MQ=255)
tctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCAAGCTGCCGAGCGCTGa > 2:1508745/1‑93 (MQ=255)
tctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGCAATCGAGccgctgaccgctga > 1:1563163/1‑93 (MQ=255)
ctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGata < 2:208489/93‑1 (MQ=255)
tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGCCCGCTGata > 2:1138526/1‑93 (MQ=255)
tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGata < 2:482219/93‑1 (MQ=255)
tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGata < 2:3721298/93‑1 (MQ=255)
tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGCACGGTAATCGAGCTGCTGACCGCTGcta > 1:1291810/1‑93 (MQ=255)
ggATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGATCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATc > 1:3395671/1‑93 (MQ=255)
ggATTCGCCGCGACCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGatat < 2:23953/93‑1 (MQ=255)
gATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATc < 1:3749524/93‑1 (MQ=255)
aTTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATcc < 2:1297631/93‑1 (MQ=255)
ttCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCcccc > 1:2568395/1‑93 (MQ=255)
cgccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGcc < 1:4179814/93‑1 (MQ=255)
ccctcgATCTGCCCCAGCCTTGCTGCGCCCAGGGCGGG‑‑CCC‑‑AA‑CAA‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAg < 2:1823428/89‑1 (MQ=255)
cgcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGCAAGGGAAAAGAGCTGCGGAGCGCTGATATCCGCCAGc > 1:204169/1‑93 (MQ=255)
gcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCCGATATCCGCCAGCac > 1:908214/1‑92 (MQ=255)
ccgATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCa < 1:2681696/92‑1 (MQ=255)
cgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGC‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATc < 1:1545206/93‑1 (MQ=255)
cgATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAt < 1:2838061/93‑1 (MQ=255)
gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATc < 2:3123817/93‑1 (MQ=255)
gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt < 1:198414/93‑1 (MQ=255)
gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt < 1:102524/93‑1 (MQ=255)
gATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATc < 1:3149896/93‑1 (MQ=255)
caTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATc < 2:3077393/92‑1 (MQ=255)
caTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt < 1:737831/92‑1 (MQ=255)
tCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTg < 1:286522/93‑1 (MQ=255)
cccgcCAGCCTTCCTGCGCCAAGTGCGGGCCCCC‑‑CA‑C‑C‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTTAc < 2:2635251/91‑1 (MQ=255)
tccccAGCCTTGCTTGCCCCAGGGCCGG‑‑CCC‑‑CACC‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGAc < 2:4219366/90‑1 (MQ=255)
gcgcCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg > 1:1580054/1‑93 (MQ=255)
cgcCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGc < 1:1070519/93‑1 (MQ=255)
cgcCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCCCACGGGAATCGAGCGCCTGACCCCCGCGATACGCCCCCATCTGCCGc > 2:3515739/1‑93 (MQ=255)
gcCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGAAATCGGCCTGCTGACCGCTGAAATAGGCCAGCATCTGATGca > 1:1596988/1‑92 (MQ=255)
gcCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑CCCCCCGCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGcc > 1:4170890/1‑93 (MQ=255)
ccAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCa < 1:3613474/93‑1 (MQ=255)
ccAGCCTCGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCa < 1:1098060/93‑1 (MQ=255)
aGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCGGCATCTGACGCCAGTa > 2:760270/1‑93 (MQ=255)
gCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTCCGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTa > 1:718014/1‑93 (MQ=255)
ccTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTAc < 1:538422/93‑1 (MQ=255)
ccTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTAc < 2:1069973/93‑1 (MQ=255)
ccTTGCCACGACCAGTGCTGG‑‑CCC‑‑CA‑C‑AACC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTAACGCCAGTAc < 2:4615528/93‑1 (MQ=255)
cTTGCTGCGCCCAGGGCGGG‑‑CCC‑‑CA‑C‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACt < 2:1140639/93‑1 (MQ=255)
gctgcGCCCAGTGCTGG‑‑CCC‑‑CC‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCAc < 1:2990636/93‑1 (MQ=255)
ctgcGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCCCACGGTAATCCAGCTGCTGACCCCTCAGATCCGCCCGCCACTCAGGCCCGTACTCAcc > 1:293715/1‑92 (MQ=255)
cgcCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAcg < 2:2784358/93‑1 (MQ=255)
gcCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGGCAGTACTCACTAcgcg > 1:3100746/1‑93 (MQ=255)
ccccAGTGCTGG‑‑CCCCTCA‑C‑C‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAcgc < 1:1910371/92‑1 (MQ=255)
cAGTGCTGG‑‑CCC‑‑CC‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcc < 1:157796/93‑1 (MQ=255)
cAGTGCTGC‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcc < 2:2380942/93‑1 (MQ=255)
cgTGCTGG‑‑CCC‑‑CG‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccc < 1:1529304/92‑1 (MQ=255)
aGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccc < 2:1814309/93‑1 (MQ=255)
gTGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcccc < 1:2131747/93‑1 (MQ=255)
gTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑CCCCCCTCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcccc < 1:179144/93‑1 (MQ=255)
cggCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcccc < 1:1290831/91‑1 (MQ=255)
tGCTGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccc > 1:753293/1‑92 (MQ=255)
cTGG‑‑CCC‑‑CA‑C‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccgcc < 1:3163811/93‑1 (MQ=255)
tGG‑‑CCC‑‑CA‑C‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccgccc < 1:2090075/93‑1 (MQ=255)
gg‑‑CCC‑‑CA‑C‑AC‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGccccc < 1:4224939/93‑1 (MQ=255)
|
CTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CA‑C‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCC > NC_000913/3725647‑3725821
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG > NC_000913/3725655‑3725839
|
AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCC > SRR4302535.2052038/1‑94 (MQ=60)
GTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑ACC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcc > SRR4302535.375839/1‑92 (MQ=60)
GCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgta < SRR4302535.3805879/94‑6 (MQ=60)
CGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACG < SRR4302535.4269437/94‑1 (MQ=60)
GCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGG < SRR4302535.3879874/94‑1 (MQ=60)
GCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgcaccg > SRR4302535.1709612/1‑86 (MQ=60)
CAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCCTACGGTA > SRR4302535.106797/1‑94 (MQ=60)
CAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccctccggc > SRR4302535.2066139/1‑85 (MQ=60)
ACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCCCCAGCCTTGCTGCGCCCAGTTCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAA < SRR4302535.4164515/94‑1 (MQ=60)
TTCAATGAGCGATATCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAG < SRR4302535.2697881/94‑1 (MQ=60)
TCAATGAGCGATTTCTCTGGATTCGCCGCCACCTTCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAG < SRR4302535.1391393/94‑1 (MQ=60)
CAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCT > SRR4302535.3153919/1‑94 (MQ=60)
AATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCT < SRR4302535.4046068/94‑1 (MQ=60)
ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGCACGGTAATCGAGCTG > SRR4302535.1078275/1‑94 (MQ=60)
ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccgcgcggatgcgggcg > SRR4302535.1135072/1‑75 (MQ=60)
TGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGC > SRR4302535.4681210/1‑94 (MQ=60)
GAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CGCCC‑‑CCCcccgtcgagacacgaggtgct > SRR4302535.1237068/1‑73 (MQ=60)
ggtTTTCTCTGGTTCCGCCGCGATCGCCGCCAGCCTTGCTGCGCCCAGTGGTGGCCCCC‑‑CAC‑‑C‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGAC < SRR4302535.2524537/91‑1 (MQ=47)
TTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgtactcgaatctaactcctcgacggc > SRR4302535.2058252/1‑66 (MQ=60)
CTCTGGCTTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGA < SRR4302535.1860498/94‑1 (MQ=60)
CTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGCAATCGAGCCGCTGACCGCTGA > SRR4302535.1574425/1‑94 (MQ=60)
CTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGCACGGTAATCGAGCTGCTGACCGCTGCTA > SRR4302535.1301017/1‑94 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGATCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATC > SRR4302535.3419295/1‑94 (MQ=60)
gattccccgccgtccGCGCCAGCCTTGCTGCGGCCAGTGCTGG‑‑CCC‑‑CACCAC‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC < SRR4302535.252941/79‑1 (MQ=60)
GATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC < SRR4302535.3775463/94‑1 (MQ=60)
ATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccgtcgggaatcagcctgctgacccccggtatccc > SRR4302535.2497120/1‑58 (MQ=60)
ATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCCCC > SRR4302535.2586870/1‑94 (MQ=60)
TTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccgaaggcaatcaagctgactcccgccgaaagcccc > SRR4302535.354646/1‑57 (MQ=60)
CGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCA < SRR4302535.4208421/94‑1 (MQ=60)
GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacggtactcgagctgatgaccgctgcgactccccac > SRR4302535.508445/1‑54 (MQ=60)
CCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGCAAGGGAAAAGAGCTGCGGAGCGCTGATATCCGCCAGC > SRR4302535.205568/1‑94 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCCGATATCCGCCAGCAC > SRR4302535.914661/1‑94 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacggtaagcgcgcgcccgacacctgccttccgccggca > SRR4302535.1326128/1‑52 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑C‑‑CCCCC‑‑CCCccctccggcaaaccacctggtcacacgccgtatctccacgcc > SRR4302535.3320201/1‑52 (MQ=60)
CCGATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT < SRR4302535.2700880/94‑1 (MQ=60)
CGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGC‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT < SRR4302535.1556333/94‑1 (MQ=60)
CGATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATC < SRR4302535.2858196/94‑1 (MQ=60)
GATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG < SRR4302535.103250/94‑1 (MQ=60)
GATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG < SRR4302535.199776/94‑1 (MQ=60)
GATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT < SRR4302535.3171790/94‑1 (MQ=60)
CATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG < SRR4302535.743018/94‑1 (MQ=60)
ATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccacccggcaacaacccgcccctgcctcgtatcgtcaccgccctg > SRR4302535.1719484/1‑48 (MQ=60)
TCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGA < SRR4302535.288527/94‑1 (MQ=60)
CTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccctgaggggaaggatctccggagccccgctttctctcctcagctgat > SRR4302535.4482613/1‑46 (MQ=60)
TGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACG > SRR4302535.1591461/1‑94 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCC < SRR4302535.1078130/94‑1 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGAAATCGGCCTGCTGACCGCTGAAATAGGCCAGCATCTGAtgca > SRR4302535.1608506/1‑90 (MQ=57)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCCCGCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCC > SRR4302535.4199448/1‑94 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccccgcgcaaagagcgtgtgtccccctgtaatcccccgcgaactgcccc > SRR4302535.911306/1‑43 (MQ=60)
CCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAG < SRR4302535.3638527/94‑1 (MQ=60)
CCAGCCTCGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAG < SRR4302535.1105876/94‑1 (MQ=60)
CAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccccccgcaatccgtcgcgtggccgctgcgattcccccccacctccctccagc > SRR4302535.2730400/1‑40 (MQ=60)
AGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTCCGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTA > SRR4302535.723057/1‑94 (MQ=60)
GCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccctacgggaatcgagctggtgcgcgccgtcatcccccccccccttcgcccagcgc > SRR4302535.103537/1‑38 (MQ=60)
CCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACT < SRR4302535.542180/94‑1 (MQ=60)
CTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcggcccggaatcgcgctgccggacgccgttatccgccagcaacaggcccccgagctca > SRR4302535.2794616/1‑36 (MQ=60)
CTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgtacggcaaccgggacgctgacggctgcgatccgccagcatctcacccccggaata > SRR4302535.3001005/1‑36 (MQ=60)
GCTGCGCCCAGTGCTGG‑‑CCC‑‑CCC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACT < SRR4302535.3011608/94‑1 (MQ=60)
GCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacggtaatccagctgctgacccctcagatccgcccgccactcaggcccgtactcacc > SRR4302535.295767/1‑33 (MQ=60)
CTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacgggcatagaggcgccggacgctgcaattgccccgccaccgcatcccccaccaccac > SRR4302535.3307765/1‑32 (MQ=60)
CGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGGCAGTACTCACTACGCG > SRR4302535.3122332/1‑94 (MQ=60)
CCCCAGTGCTGG‑‑CCCCTCAC‑‑C‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCG < SRR4302535.1924139/94‑1 (MQ=60)
ctgcctcccccagggcctcccccacccccCCCCC‑‑CCCGTACGGTAATCCAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCA < SRR4302535.2410062/65‑1 (MQ=60)
CAGTGCTGG‑‑CCC‑‑CCC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCC < SRR4302535.158910/94‑1 (MQ=60)
CGTGCTGG‑‑CCC‑‑CGC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCC < SRR4302535.1540321/94‑1 (MQ=60)
cgGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.1300034/92‑1 (MQ=60)
GTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.2147114/94‑1 (MQ=60)
GTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCC > SRR4302535.758595/1‑94 (MQ=60)
GTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCCCTCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.180389/94‑1 (MQ=60)
tccccccgtgcctgccccacaaccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACG < SRR4302535.4098390/70‑1 (MQ=60)
gccccttgtgcgggccccacacccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACG < SRR4302535.2031613/70‑1 (MQ=60)
CTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCC < SRR4302535.3185750/94‑1 (MQ=60)
TGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCC < SRR4302535.2105136/94‑1 (MQ=60)
GG‑‑CCC‑‑CAC‑‑AC‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCA < SRR4302535.4253847/94‑1 (MQ=60)
G‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGGACGGGAATCGACGTGCTGACCGCTGATATCCGCCAGCATCTGACGCCCGTACTCACTACACGCCCCGCCCCCA > SRR4302535.2323260/1‑94 (MQ=60)
agtcctgcccccccaccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.3707458/77‑1 (MQ=60)
cccccctccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAT < SRR4302535.1793216/85‑1 (MQ=60)
C‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAAGCGCCCCGCCCCCCATCAACG > SRR4302535.618326/1‑94 (MQ=60)
cacacccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCA < SRR4302535.1439718/87‑1 (MQ=60)
catccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAAC < SRR4302535.451049/89‑1 (MQ=60)
aaccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACG < SRR4302535.2590083/90‑1 (MQ=60)
C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGGCCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAA > SRR4302535.2308815/1‑94 (MQ=60)
C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAA > SRR4302535.4435896/1‑94 (MQ=60)
CCCCC‑‑CCCGTAGGTTAACCGGGTTGCCGACCGCTGAAACCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAAC < SRR4302535.3980153/94‑1 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACC > SRR4302535.1377844/1‑94 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA < SRR4302535.3605282/94‑1 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA > SRR4302535.3568411/1‑94 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGACCCCAATCAACGTAACA > SRR4302535.496498/1‑94 (MQ=60)
CCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACAC > SRR4302535.4280351/1‑94 (MQ=60)
CC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACT < SRR4302535.147610/94‑1 (MQ=60)
C‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTT > SRR4302535.976374/1‑94 (MQ=60)
C‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTT > SRR4302535.479969/1‑94 (MQ=60)
CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT > SRR4302535.1510601/1‑94 (MQ=60)
CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT > SRR4302535.4588299/1‑94 (MQ=60)
CCCGTACAGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT < SRR4302535.3486016/94‑1 (MQ=60)
CCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG > SRR4302535.3155527/1‑94 (MQ=60)
|
AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG > NC_000913/3725655‑3725839
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
