Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,787,263	C→G	G149A (GGC→GCC)	yibD ←	putative regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,787,263	0	C	G	100.0%	710.5 / NA	227	G149A (GGC→GCC)	yibD	putative regulator
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (129/98); total (129/98)

Only 100 of 233 total aligned reads displayed.

TTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC  >  NC_000913/3787173‑3787352

tttttAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCg                                                                                         >  2:2349568/1‑93 (MQ=255)

tttttAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCg                                                                                         >  2:1722492/1‑93 (MQ=255)

     aaCAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTaa                                                                                    <  2:3664429/93‑1 (MQ=255)

     aaCAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTaa                                                                                    <  1:2053982/93‑1 (MQ=255)

      aCAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAAt                                                                                   <  1:1175275/93‑1 (MQ=255)

       cAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATa                                                                                  >  1:4670132/1‑93 (MQ=255)

        aaTAACATCACGGCGATAAGCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCAGCCGCAGCCAGTCCGGGGCGGTTAATAc                                                                                 <  2:2216044/93‑1 (MQ=255)

        aaTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAc                                                                                 >  2:964903/1‑93 (MQ=255)

        aaTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAc                                                                                 >  1:2598934/1‑93 (MQ=255)

        aaTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAc                                                                                 >  1:755004/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  1:2447759/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  1:3088801/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  1:577681/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  2:1968902/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  2:3238243/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  2:4029431/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCACGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGGTAATACg                                                                                >  2:4619824/1‑93 (MQ=255)

          tAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGc                                                                               >  1:1165967/1‑93 (MQ=255)

           aaCATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGcc                                                                              <  1:960801/93‑1 (MQ=255)

           aaCATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGcc                                                                              >  2:1687237/1‑93 (MQ=255)

              aTCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGt                                                                           >  1:1128139/1‑93 (MQ=255)

              aTCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGt                                                                           >  1:54405/1‑93 (MQ=255)

              aTCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGt                                                                           >  1:2962416/1‑93 (MQ=255)

              aTCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGt                                                                           >  2:751350/1‑93 (MQ=255)

               tCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGTAGCAAGTCCGGGGCGGTTAATACGACGGtt                                                                          >  1:805035/1‑93 (MQ=255)

               tCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGtt                                                                          <  2:511920/93‑1 (MQ=255)

               tCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTCAATACGccagcg                                                                          >  2:147149/1‑89 (MQ=255)

                 aCGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGa                                                                        >  2:4267956/1‑93 (MQ=255)

                  cGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAg                                                                       <  2:584394/93‑1 (MQ=255)

                      gATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGGTGAGCGaa                                                                   >  1:3549275/1‑93 (MQ=255)

                      gATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCAAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGaa                                                                   <  2:1502478/93‑1 (MQ=255)

                       aTAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAg                                                                  <  1:4528446/93‑1 (MQ=255)

                       aTAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAg                                                                  >  1:2733402/1‑93 (MQ=255)

                       aTAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAg                                                                  <  2:955991/93‑1 (MQ=255)

                        tAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAgg                                                                 >  2:1149636/1‑93 (MQ=255)

                        tAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAgg                                                                 >  1:1266550/1‑93 (MQ=255)

                        tAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAgg                                                                 <  1:2383283/93‑1 (MQ=255)

                        tAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAgg                                                                 >  1:2334475/1‑93 (MQ=255)

                        aaaaCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAgg                                                                 <  2:4070644/92‑1 (MQ=255)

                         aaaCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGc                                                                <  2:2700848/93‑1 (MQ=255)

                          aaCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCg                                                               >  2:1645129/1‑93 (MQ=255)

                           aCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGa                                                              <  1:1594446/93‑1 (MQ=255)

                              cccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCg                                                           >  1:2501662/1‑93 (MQ=255)

                              cccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCg                                                           >  2:1810671/1‑93 (MQ=255)

                              cccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCg                                                           >  2:1370045/1‑93 (MQ=255)

                               ccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCgg                                                          >  1:4188053/1‑93 (MQ=255)

                                cATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGt                                                         <  1:915527/93‑1 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       <  1:4082402/93‑1 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       >  2:3423665/1‑93 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       >  1:1974417/1‑93 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       <  2:2931964/93‑1 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       >  1:3524767/1‑93 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCACGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       <  2:4134577/93‑1 (MQ=255)

                                   ccAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTggg                                                      <  1:3803801/93‑1 (MQ=255)

                                     aGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGgga                                                    >  1:66206/1‑93 (MQ=255)

                                     aGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGgga                                                    <  1:1449407/93‑1 (MQ=255)

                                      gACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggat                                                   <  1:1212554/93‑1 (MQ=255)

                                       aCAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGgtatg                                                  >  1:3929311/1‑93 (MQ=255)

                                       aCAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatg                                                  <  1:1519534/93‑1 (MQ=255)

                                        cAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatgg                                                 <  2:1174007/93‑1 (MQ=255)

                                         aaCGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatgga                                                >  2:3124368/1‑93 (MQ=255)

                                         aaCGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatgga                                                <  2:4446259/93‑1 (MQ=255)

                                          aCGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatggat                                               <  1:3386293/93‑1 (MQ=255)

                                            gTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTg                                             <  1:2151222/93‑1 (MQ=255)

                                             tGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATGCGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGc                                            <  2:390137/93‑1 (MQ=255)

                                             tGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGc                                            >  1:190920/1‑93 (MQ=255)

                                                gTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAg                                         <  2:913727/93‑1 (MQ=255)

                                                  ccAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGt                                       <  2:4405388/93‑1 (MQ=255)

                                                  ccAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGt                                       <  2:3468147/93‑1 (MQ=255)

                                                   cAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGtt                                      >  2:3773667/1‑93 (MQ=255)

                                                     aCGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTtc                                    <  1:3358238/93‑1 (MQ=255)

                                                     aCGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTtc                                    <  1:1349135/93‑1 (MQ=255)

                                                     aCGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTtc                                    >  1:1405835/1‑93 (MQ=255)

                                                           cgAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGt                              >  1:3394120/1‑93 (MQ=255)

                                                             aagaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGttt                            >  2:833347/1‑93 (MQ=255)

                                                              agaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTc                           >  1:3665999/1‑93 (MQ=255)

                                                              agaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTc                           <  2:3306994/93‑1 (MQ=255)

                                                               gaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCa                          >  1:2721187/1‑93 (MQ=255)

                                                               gaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCa                          <  2:2557018/93‑1 (MQ=255)

                                                               gaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCa                          >  2:688357/1‑93 (MQ=255)

                                                               gaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCa                          <  1:3714326/93‑1 (MQ=255)

                                                                aaaGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCAc                         <  1:3964371/93‑1 (MQ=255)

                                                                  aGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGa                       >  2:1772209/1‑93 (MQ=255)

                                                                   gCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGaa                      >  2:3692858/1‑93 (MQ=255)

                                                                     cccATCCGCAGCCAGTGCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGaaaa                    <  2:2915630/93‑1 (MQ=255)

                                                                     cccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGaaaa                    >  2:2592646/1‑93 (MQ=255)

                                                                     cccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGaaaa                    >  2:2078506/1‑93 (MQ=255)

                                                                      ccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAac                   >  2:3063605/1‑93 (MQ=255)

                                                                      ccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAac                   >  1:867025/1‑93 (MQ=255)

                                                                      ccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGACAGGTTTCTCCCGTTTCACGAAAac                   >  2:420455/1‑93 (MQ=255)

                                                                        aTCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAacac                 >  2:283143/1‑93 (MQ=255)

                                                                         tCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACAcc                >  2:2300733/1‑93 (MQ=255)

                                                                           cGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAg              <  1:1791732/93‑1 (MQ=255)

                                                                            gCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGt             <  1:3219235/93‑1 (MQ=255)

                                                                             cAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTc            >  2:1932571/1‑93 (MQ=255)

                                                                               gCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTTCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAg          >  1:4034905/1‑93 (MQ=255)

                                                                               gCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAg          >  1:4362327/1‑93 (MQ=255)

                                                                                ccAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGc         <  1:712862/93‑1 (MQ=255)

                                                                                  aGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGt       <  2:1632980/93‑1 (MQ=255)

                                                                                   gTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGtt      >  2:4501540/1‑93 (MQ=255)

TTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC  >  NC_000913/3787173‑3787352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTATTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCG  >  NC_000913/3787169‑3787356

GTTATTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGT‑CAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGG                                                                                               >  SRR4302535.3853235/1‑94 (MQ=60)

 TTATTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGG                                                                                               <  SRR4302535.1441986/94‑1 (MQ=60)

 TTATTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGG                                                                                               >  SRR4302535.4166030/1‑94 (MQ=60)

  gatctgcgtggtTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGC                                                                                              <  SRR4302535.1353847/82‑1 (MQ=60)

  TATTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGC                                                                                              >  SRR4302535.100813/1‑94 (MQ=60)

    TTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGG                                                                                            >  SRR4302535.3710360/1‑94 (MQ=60)

    TTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGG                                                                                            >  SRR4302535.1226748/1‑94 (MQ=60)

     TTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGT                                                                                           >  SRR4302535.2047082/1‑94 (MQ=60)

     TTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGT                                                                                           <  SRR4302535.4204396/94‑1 (MQ=60)

       TTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTA                                                                                         >  SRR4302535.1979219/1‑94 (MQ=60)

         AACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAAT                                                                                       <  SRR4302535.2068777/94‑1 (MQ=60)

         AACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAAT                                                                                       <  SRR4302535.4697314/94‑1 (MQ=60)

          ACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATA                                                                                      <  SRR4302535.1183665/94‑1 (MQ=60)

          ACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATA                                                                                      >  SRR4302535.4701679/1‑94 (MQ=60)

           CAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAG                                                                                     >  SRR4302535.953339/1‑94 (MQ=60)

           CAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAC                                                                                     >  SRR4302535.760321/1‑94 (MQ=60)

           CAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAC                                                                                     >  SRR4302535.2617595/1‑94 (MQ=60)

           CAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAC                                                                                     >  SRR4302535.3569730/1‑94 (MQ=60)

            AATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACG                                                                                    >  SRR4302535.581737/1‑94 (MQ=60)

            AATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACG                                                                                    >  SRR4302535.2465393/1‑94 (MQ=60)

            AATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACG                                                                                    >  SRR4302535.1504204/1‑94 (MQ=60)

            AATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACG                                                                                    >  SRR4302535.3110313/1‑94 (MQ=60)

             ATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGC                                                                                   >  SRR4302535.2157551/1‑94 (MQ=60)

             ATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGC                                                                                   >  SRR4302535.1218263/1‑94 (MQ=60)

             ATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGC                                                                                   >  SRR4302535.3920074/1‑94 (MQ=60)

             ATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGC                                                                                   >  SRR4302535.1174294/1‑94 (MQ=60)

              TAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCC                                                                                  <  SRR4302535.2583971/94‑1 (MQ=60)

               AACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCG                                                                                 <  SRR4302535.3437367/94‑1 (MQ=60)

               AACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCG                                                                                 <  SRR4302535.967626/94‑1 (MQ=60)

                 CATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGT                                                                               >  SRR4302535.2983211/1‑94 (MQ=60)

                 CATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGT                                                                               >  SRR4302535.1136193/1‑94 (MQ=60)

                 CATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGT                                                                               >  SRR4302535.54804/1‑94 (MQ=60)

                 CATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGT                                                                               >  SRR4302535.590651/1‑94 (MQ=60)

                  ATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGTAGCAAGTCCGGGGCGGTTAATACGACGGTT                                                                              >  SRR4302535.810686/1‑94 (MQ=60)

                  ATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTT                                                                              >  SRR4302535.3988441/1‑94 (MQ=60)

                  ATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTT                                                                              >  SRR4302535.585606/1‑94 (MQ=60)

                    CACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGA                                                                            >  SRR4302535.3707879/1‑94 (MQ=60)

                     ACGGCGATAATCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAG                                                                           <  SRR4302535.1449750/94‑1 (MQ=60)

                     ACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAG                                                                           <  SRR4302535.2498718/94‑1 (MQ=60)

                       GGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCG                                                                         >  SRR4302535.4080342/1‑94 (MQ=60)

                       GGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCG                                                                         <  SRR4302535.3579220/94‑1 (MQ=60)

                        GCGATAACCCCCCATCCAGACAACGTGAGTCCAACGGAGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGA                                                                        <  SRR4302535.3434977/94‑1 (MQ=60)

                        GCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGA                                                                        >  SRR4302535.3129032/1‑94 (MQ=60)

                         CGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGGTGAGCGAA                                                                       >  SRR4302535.3573910/1‑94 (MQ=60)

                          GATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAG                                                                      >  SRR4302535.2752909/1‑94 (MQ=60)

                           ATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGG                                                                     >  SRR4302535.1275608/1‑94 (MQ=60)

                           ATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGG                                                                     >  SRR4302535.2351181/1‑94 (MQ=60)

                           ATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGG                                                                     <  SRR4302535.4559456/94‑1 (MQ=60)

                            TAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGC                                                                    <  SRR4302535.2400397/94‑1 (MQ=60)

                               ACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGAT                                                                 <  SRR4302535.1605949/94‑1 (MQ=60)

                                CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATC                                                                <  SRR4302535.556856/94‑1 (MQ=60)

                                CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATC                                                                <  SRR4302535.961935/94‑1 (MQ=60)

                                CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATC                                                                >  SRR4302535.4485382/1‑94 (MQ=60)

                                 CCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCG                                                               >  SRR4302535.2519705/1‑94 (MQ=60)

                                 CCCCATCCAGACAACGTGAGTCCAACAGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGATAATACGCCGGATGAGCGAAGGCGATCG                                                               >  SRR4302535.4660808/1‑94 (MQ=60)

                                  CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGG                                                              >  SRR4302535.3242142/1‑94 (MQ=60)

                                  CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGG                                                              >  SRR4302535.4216716/1‑94 (MQ=60)

                                   CCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGT                                                             <  SRR4302535.3017397/94‑1 (MQ=60)

                                    CATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTG                                                            >  SRR4302535.807702/1‑94 (MQ=60)

                                    CATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTG                                                            <  SRR4302535.922027/94‑1 (MQ=60)

                                    CATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTG                                                            <  SRR4302535.3977865/94‑1 (MQ=60)

                                    CATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTG                                                            <  SRR4302535.414355/94‑1 (MQ=60)

                                    CATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTG                                                            <  SRR4302535.2402264/94‑1 (MQ=60)

                                     ATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGG                                                           >  SRR4302535.3549245/1‑94 (MQ=60)

                                     ATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGG                                                           >  SRR4302535.1988635/1‑94 (MQ=60)

                                      TCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGG                                                          <  SRR4302535.4110324/94‑1 (MQ=60)

                                      TCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGG                                                          <  SRR4302535.4712354/94‑1 (MQ=60)

                                       CCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGG                                                         <  SRR4302535.3830023/94‑1 (MQ=60)

                                        CAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGA                                                        >  SRR4302535.1753793/1‑94 (MQ=60)

                                        CAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGA                                                        >  SRR4302535.66703/1‑94 (MQ=60)

                                         AGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGAT                                                       <  SRR4302535.3398776/94‑1 (MQ=60)

                                         AGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGAT                                                       <  SRR4302535.157180/94‑1 (MQ=60)

                                         AGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGAT                                                       <  SRR4302535.1459771/94‑1 (MQ=60)

                                          GACAACGTGAGTCCAACGGCGCGAAGAACGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATCCGCCGGTTGAGCGAAGGCGATCGGTGGGGATG                                                      <  SRR4302535.1396084/94‑1 (MQ=60)

                                          GACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGTATG                                                      >  SRR4302535.3956149/1‑94 (MQ=60)

                                          GACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATG                                                      <  SRR4302535.1221252/94‑1 (MQ=60)

                                           ACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGTGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGG                                                     <  SRR4302535.2537338/94‑1 (MQ=60)

                                           ACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGG                                                     <  SRR4302535.1530478/94‑1 (MQ=60)

                                            CAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGA                                                    >  SRR4302535.762518/1‑94 (MQ=60)

                                             AACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAaacccgggttggggcagaggggggcgggggggggg                                                   >  SRR4302535.4537700/1‑59 (MQ=60)

                                             AACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGAT                                                   <  SRR4302535.2376754/94‑1 (MQ=60)

                                              ACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATT                                                  <  SRR4302535.1182296/94‑1 (MQ=60)

                                              ACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATT                                                  <  SRR4302535.200882/94‑1 (MQ=60)

                                              ACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATT                                                  <  SRR4302535.3409857/94‑1 (MQ=60)

                                                GTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGC                                                <  SRR4302535.2166687/94‑1 (MQ=60)

                                                GTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGC                                                >  SRR4302535.192241/1‑94 (MQ=60)

                                                    GTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGG                                            >  SRR4302535.3252507/1‑94 (MQ=60)

                                                    GTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGG                                            <  SRR4302535.4057880/94‑1 (MQ=60)

                                                       CAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTT                                         >  SRR4302535.2675621/1‑94 (MQ=60)

                                                        AACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTC                                        <  SRR4302535.1421149/94‑1 (MQ=60)

                                                        AACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTC                                        >  SRR4302535.1415881/1‑94 (MQ=60)

                                                         ACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCT                                       >  SRR4302535.2307251/1‑94 (MQ=60)

                                                         ACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCT                                       <  SRR4302535.3381615/94‑1 (MQ=60)

                                                         ACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCT                                       <  SRR4302535.1358770/94‑1 (MQ=60)

                                                           GGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCC                                     >  SRR4302535.1227175/1‑94 (MQ=60)

                                                            GCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCC                                    <  SRR4302535.728908/94‑1 (MQ=60)

                                                              GCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGT                                  >  SRR4302535.3417735/1‑94 (MQ=60)

                                                               CGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTT                                 <  SRR4302535.2363643/94‑1 (MQ=60)

                                                                 AAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTC                               >  SRR4302535.3691385/1‑94 (MQ=60)

                                                                  AGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCA                              <  SRR4302535.1883235/94‑1 (MQ=60)

                                                                  AGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCA                              >  SRR4302535.2740624/1‑94 (MQ=60)

                                                                  AGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCA                              >  SRR4302535.1745412/1‑94 (MQ=60)

                                                                   GAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCAC                             <  SRR4302535.1141997/94‑1 (MQ=60)

                                                                   GAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCAC                             <  SRR4302535.3740060/94‑1 (MQ=60)

                                                                    AAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACG                            <  SRR4302535.3991452/94‑1 (MQ=60)

                                                                      AGCCCCACCCGCACCCAGCCCGGCGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGTATGGATTGCCAGGTTTCTCCCGTTTCACGAA                          <  SRR4302535.668437/94‑1 (MQ=60)

                                                                        CCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAA                        >  SRR4302535.865943/1‑94 (MQ=60)

                                                                        CCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAA                        <  SRR4302535.378505/94‑1 (MQ=60)

                                                                         CCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAAC                       >  SRR4302535.873160/1‑94 (MQ=60)

                                                                          CCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTGTCCCGTTTCACGAAAACA                      >  SRR4302535.710584/1‑94 (MQ=60)

                                                                          CCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACA                      <  SRR4302535.901060/94‑1 (MQ=60)

                                                                            ATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACC                    <  SRR4302535.274261/94‑1 (MQ=60)

                                                                             TCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCA                   <  SRR4302535.3417226/94‑1 (MQ=60)

                                                                              CCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAG                  <  SRR4302535.1311288/94‑1 (MQ=60)

                                                                               CGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGT                 <  SRR4302535.1804685/94‑1 (MQ=60)

                                                                                GCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTC                <  SRR4302535.3241540/94‑1 (MQ=60)

                                                                                  AGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTTCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAG              >  SRR4302535.4062528/1‑94 (MQ=60)

                                                                                  AGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAG              >  SRR4302535.4392179/1‑94 (MQ=60)

                                                                                    CCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCG            <  SRR4302535.717865/94‑1 (MQ=60)

                                                                                    CCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCG            >  SRR4302535.2936521/1‑94 (MQ=60)

                                                                                      AGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTT          >  SRR4302535.4261503/1‑94 (MQ=60)

                                                                                           GGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACT     <  SRR4302535.2891543/94‑1 (MQ=60)

                                                                                           GGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACT     >  SRR4302535.4609580/1‑94 (MQ=60)

                                                                                              GCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCG  >  SRR4302535.3749725/1‑94 (MQ=60)

                                                                                              GCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCG  <  SRR4302535.3841275/94‑1 (MQ=60)

GTTATTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCG  >  NC_000913/3787169‑3787356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`