Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,802,880 |
A→G |
M233T (ATG→ACG) |
rfaP ← |
RfaP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,802,880 | 0 | A | G | 100.0%
| 484.9
/ NA
| 153 | M233T (ATG→ACG) | rfaP | RfaP |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (135/18); total (135/18) |
Only 100 of 153 total aligned reads displayed.
TGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA > NC_000913/3802791‑3802969
|
tGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTcc > 2:1436310/1‑93 (MQ=255)
gCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTccc > 1:2212423/1‑93 (MQ=255)
gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa > 2:2666802/1‑93 (MQ=255)
gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa > 1:2252041/1‑93 (MQ=255)
gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa > 2:3744368/1‑93 (MQ=255)
ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa > 2:621068/1‑93 (MQ=255)
ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa > 2:2333536/1‑93 (MQ=255)
ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa > 1:4255723/1‑93 (MQ=255)
gtgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAAt > 1:334191/1‑93 (MQ=255)
tgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATa < 1:2921588/93‑1 (MQ=255)
gtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATaa > 2:1824822/1‑93 (MQ=255)
gtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATaa > 1:4234005/1‑93 (MQ=255)
gtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATaa > 1:2861305/1‑93 (MQ=255)
ttCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATaaa > 2:3336165/1‑93 (MQ=255)
ttCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATaaa > 1:3020885/1‑93 (MQ=255)
tCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAAc > 1:1391565/1‑93 (MQ=255)
tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc > 1:405301/1‑93 (MQ=255)
ctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTct > 1:4563854/1‑92 (MQ=255)
ctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCa > 2:1887434/1‑93 (MQ=255)
ctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCa > 1:1676118/1‑93 (MQ=255)
tttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCAt > 2:1278417/1‑93 (MQ=255)
tttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCAt > 2:511723/1‑93 (MQ=255)
aaTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATaaa > 2:4404130/1‑93 (MQ=255)
aTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAt > 1:2274419/1‑93 (MQ=255)
aTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAt > 2:4373842/1‑93 (MQ=255)
tACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATc < 2:2121425/93‑1 (MQ=255)
tCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAg > 1:299922/1‑93 (MQ=255)
tCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAg > 1:89529/1‑93 (MQ=255)
gCCTTAACGCTTGTCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCAAAAATAAACCTTCATAAATCGCCAGata < 2:4108425/93‑1 (MQ=255)
gCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGata > 2:2326731/1‑93 (MQ=255)
ccTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGatat > 1:1138397/1‑93 (MQ=255)
cTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtc > 2:1576578/1‑93 (MQ=255)
cTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtc > 1:1727092/1‑93 (MQ=255)
cTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtc > 2:2149747/1‑93 (MQ=255)
ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct > 2:1359401/1‑93 (MQ=255)
ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct > 2:101212/1‑93 (MQ=255)
aaCGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAACGCCAGATATctct < 1:3073082/93‑1 (MQ=255)
aCGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCtt < 2:4442658/93‑1 (MQ=255)
gCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCACAATAAACCTTCATAAATCGCCAGATATCTCTTTg > 1:202691/1‑93 (MQ=255)
gCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTg > 2:2709862/1‑93 (MQ=255)
cTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGc > 2:562005/1‑93 (MQ=255)
ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg > 1:444346/1‑93 (MQ=255)
ccATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCa > 1:1854045/1‑93 (MQ=255)
ccATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCa > 2:1363023/1‑93 (MQ=255)
cATGTTCAATAAATTCTGTTCACGAGGCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg > 2:3036340/1‑93 (MQ=255)
cATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg > 1:4616053/1‑93 (MQ=255)
cATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg > 1:3321531/1‑93 (MQ=255)
aTGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAgg > 1:4451416/1‑93 (MQ=255)
aTGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAgg > 1:2943367/1‑93 (MQ=255)
tGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGc > 2:2485106/1‑93 (MQ=255)
tGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGc > 2:313828/1‑93 (MQ=255)
gTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGcc > 1:752761/1‑93 (MQ=255)
cAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAat > 1:2054313/1‑93 (MQ=255)
cAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGACAat > 2:320823/1‑93 (MQ=255)
aaTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAata > 2:655112/1‑93 (MQ=255)
aTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAatat < 2:200030/93‑1 (MQ=255)
aTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAatat > 2:1200559/1‑93 (MQ=255)
aTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAatat > 1:4644051/1‑93 (MQ=255)
tAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATAtt > 1:2793353/1‑93 (MQ=255)
tAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATAtt > 1:2625842/1‑93 (MQ=255)
aaTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCa > 2:3898318/1‑93 (MQ=255)
aTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTGAt > 2:2717778/1‑93 (MQ=255)
ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt < 1:3481261/93‑1 (MQ=255)
tCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtg > 2:1819265/1‑93 (MQ=255)
tCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtg > 2:3405565/1‑93 (MQ=255)
tGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgat > 1:4172299/1‑93 (MQ=255)
gTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgatg > 1:3919276/1‑93 (MQ=255)
gTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgatg > 1:46934/1‑93 (MQ=255)
ttCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgatga > 1:1302643/1‑93 (MQ=255)
aaGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaa > 1:3856152/1‑93 (MQ=255)
aaGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaa > 1:631380/1‑93 (MQ=255)
agagACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaaa < 2:4089912/93‑1 (MQ=255)
gagaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAat > 1:1110450/1‑93 (MQ=255)
agaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAata > 1:2418922/1‑93 (MQ=255)
gaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAatat < 2:3123057/93‑1 (MQ=255)
gaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAatat > 2:4187433/1‑93 (MQ=255)
aCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAtata > 2:929506/1‑93 (MQ=255)
cAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATaa > 2:732251/1‑93 (MQ=255)
aaTATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATaaa < 2:4523318/93‑1 (MQ=255)
atTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCa > 2:1067890/1‑93 (MQ=255)
atTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCa > 1:826018/1‑93 (MQ=255)
atTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCa > 1:3458844/1‑93 (MQ=255)
ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa < 2:3427796/93‑1 (MQ=255)
ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa > 2:2004575/1‑93 (MQ=255)
ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa > 2:2033033/1‑93 (MQ=255)
ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa > 2:2014534/1‑93 (MQ=255)
cGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAgg > 2:2876374/1‑93 (MQ=255)
gTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGt > 1:3092137/1‑93 (MQ=255)
gTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGt > 2:2671344/1‑93 (MQ=255)
gTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGt > 1:326416/1‑93 (MQ=255)
tAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTc > 1:3351968/1‑93 (MQ=255)
tAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTc > 1:3988086/1‑93 (MQ=255)
tAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTc > 1:1878184/1‑93 (MQ=255)
tAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTc > 2:3624716/1‑93 (MQ=255)
aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt > 2:4264623/1‑93 (MQ=255)
aGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCttt < 1:622676/93‑1 (MQ=255)
aGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCttt > 2:540177/1‑93 (MQ=255)
aGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCttt > 2:2182130/1‑93 (MQ=255)
aGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCttt > 2:3500197/1‑93 (MQ=255)
ggCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTa > 2:4045114/1‑93 (MQ=255)
|
TGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA > NC_000913/3802791‑3802969
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTTTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTATCGC > NC_000913/3802787‑3802973
|
CCTTTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCG > SRR4302535.1443506/1‑94 (MQ=60)
CTTTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGT > SRR4302535.3501651/1‑94 (MQ=60)
TGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCC > SRR4302535.2228179/1‑94 (MQ=60)
CGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAA > SRR4302535.4665744/1‑94 (MQ=60)
CGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAA > SRR4302535.2268077/1‑94 (MQ=60)
GTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAA > SRR4302535.4284878/1‑94 (MQ=60)
TGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAAT > SRR4302535.1910268/1‑94 (MQ=60)
TGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAAT > SRR4302535.336503/1‑94 (MQ=60)
TGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAA > SRR4302535.4262978/1‑94 (MQ=60)
TGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAA < SRR4302535.2942198/94‑1 (MQ=60)
TGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAA > SRR4302535.2881573/1‑94 (MQ=60)
GTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAA > SRR4302535.3042042/1‑94 (MQ=60)
TTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAAC > SRR4302535.1401498/1‑94 (MQ=60)
CTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTC > SRR4302535.408141/1‑94 (MQ=60)
TCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCT > SRR4302535.4594998/1‑94 (MQ=60)
TCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCA > SRR4302535.1688255/1‑94 (MQ=60)
AATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAT > SRR4302535.2290652/1‑94 (MQ=60)
CTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAG > SRR4302535.302013/1‑94 (MQ=60)
CTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAG > SRR4302535.90160/1‑94 (MQ=60)
GCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAT > SRR4302535.1146513/1‑94 (MQ=60)
CCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATC > SRR4302535.1739578/1‑94 (MQ=60)
AACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAACGCCAGATATCTCTT < SRR4302535.3094536/94‑1 (MQ=60)
CGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCACAATAAACCTTCATAAATCGCCAGATATCTCTTTG > SRR4302535.204073/1‑94 (MQ=60)
CGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTG > SRR4302535.2191279/1‑94 (MQ=60)
CGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTG > SRR4302535.363770/1‑94 (MQ=60)
CTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCG > SRR4302535.447455/1‑94 (MQ=60)
TTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGT > SRR4302535.3200086/1‑94 (MQ=60)
GCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCA > SRR4302535.1867400/1‑94 (MQ=60)
CCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAG > SRR4302535.3344641/1‑94 (MQ=60)
CCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAG > SRR4302535.4647422/1‑94 (MQ=60)
CATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGG > SRR4302535.4481945/1‑94 (MQ=60)
CATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGG > SRR4302535.2964059/1‑94 (MQ=60)
TGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCC > SRR4302535.758060/1‑94 (MQ=60)
TCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAAT > SRR4302535.2069112/1‑94 (MQ=60)
CAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATA > SRR4302535.675744/1‑94 (MQ=60)
AATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATAT > SRR4302535.4675526/1‑94 (MQ=60)
AATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATAT > SRR4302535.344576/1‑94 (MQ=60)
ATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATT > SRR4302535.2813230/1‑94 (MQ=60)
ATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATT > SRR4302535.2644658/1‑94 (MQ=60)
TTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTG < SRR4302535.3505441/94‑1 (MQ=60)
CTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGAT > SRR4302535.4200859/1‑94 (MQ=60)
TGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATG > SRR4302535.3946080/1‑94 (MQ=60)
TGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATG > SRR4302535.47289/1‑94 (MQ=60)
GTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGA > SRR4302535.1783497/1‑94 (MQ=60)
GTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGA > SRR4302535.4392478/1‑94 (MQ=60)
GTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGA > SRR4302535.1311945/1‑94 (MQ=60)
TCAAGAGACAATATTTTGCGTAAGGGCGTCCCAAACTAAGCCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTGATTGATGAGA > SRR4302535.1655594/1‑94 (MQ=60)
CAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAA > SRR4302535.3882704/1‑94 (MQ=60)
CAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAA > SRR4302535.635783/1‑94 (MQ=60)
AAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAA > SRR4302535.2927676/1‑94 (MQ=60)
AGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAT > SRR4302535.1118378/1‑94 (MQ=60)
AGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAT < SRR4302535.3364522/94‑1 (MQ=60)
GAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATA > SRR4302535.2436336/1‑94 (MQ=60)
AGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATAT > SRR4302535.2838755/1‑94 (MQ=60)
ACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCCGGCCAATATTCATTGATGAGAAATATAA > SRR4302535.4539515/1‑94 (MQ=60)
ACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAA > SRR4302535.893732/1‑94 (MQ=60)
ACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAA > SRR4302535.228221/1‑94 (MQ=60)
AATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGACAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAC > SRR4302535.4139543/1‑94 (MQ=60)
ATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACC > SRR4302535.4257004/1‑94 (MQ=60)
TATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCA > SRR4302535.3482892/1‑94 (MQ=60)
TATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCA > SRR4302535.2492081/1‑94 (MQ=60)
TATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCA > SRR4302535.831802/1‑94 (MQ=60)
ATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAA > SRR4302535.1213117/1‑94 (MQ=60)
ATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAA > SRR4302535.544473/1‑94 (MQ=60)
CGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGT > SRR4302535.328678/1‑94 (MQ=60)
CGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGT > SRR4302535.3113671/1‑94 (MQ=60)
CGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGT > SRR4302535.3042524/1‑94 (MQ=60)
GTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTC > SRR4302535.1891717/1‑94 (MQ=60)
GTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTC > SRR4302535.3375315/1‑94 (MQ=60)
GTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTC > SRR4302535.4015357/1‑94 (MQ=60)
TAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCT < SRR4302535.2996770/94‑1 (MQ=60)
TAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCT > SRR4302535.3971211/1‑94 (MQ=60)
AGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA < SRR4302535.627001/94‑1 (MQ=60)
GTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTATCGC > SRR4302535.2609497/1‑94 (MQ=60)
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CCTTTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTATCGC > NC_000913/3802787‑3802973
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
