Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,822,652	T→C	Y171H (TAC→CAC)	spoU →	putative RNA methylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,822,652	0	T	C	100.0%	807.6 / NA	250	Y171H (TAC→CAC)	spoU	putative RNA methylase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (115/135); total (115/135)

Only 100 of 253 total aligned reads displayed.

ATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGTACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAA  >  NC_000913/3822562‑3822741

 tgatCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCAcc                                                                                        >  2:1827863/1‑93 (MQ=255)

 tgatCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGAAcc                                                                                        >  1:2445678/1‑93 (MQ=255)

    tCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGc                                                                                     >  2:1404470/1‑93 (MQ=255)

      ggCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGt                                                                                   <  2:1898316/93‑1 (MQ=255)

      ggCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGt                                                                                   >  2:2116935/1‑93 (MQ=255)

       gCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTg                                                                                  >  2:4049234/1‑93 (MQ=255)

       gCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTg                                                                                  >  2:4431645/1‑93 (MQ=255)

       gCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTg                                                                                  >  2:1574376/1‑93 (MQ=255)

         aTGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTGCGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGaa                                                                                <  2:2693112/93‑1 (MQ=255)

         aTGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGaa                                                                                >  1:59827/1‑93 (MQ=255)

         aTGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGaa                                                                                >  1:2121773/1‑93 (MQ=255)

           ggTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGaaaa                                                                              <  1:1157195/93‑1 (MQ=255)

            gTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAAc                                                                             <  2:3412443/93‑1 (MQ=255)

              gCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAg                                                                           >  1:4661100/1‑93 (MQ=255)

               cAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGc                                                                          <  1:4518260/93‑1 (MQ=255)

               cAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGc                                                                          <  1:37225/93‑1 (MQ=255)

               cAGTCGCTGAATGTTTCCGTTGCCTCAGCCCCCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGc                                                                          <  1:2168843/93‑1 (MQ=255)

                aGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCa                                                                         <  2:4084902/93‑1 (MQ=255)

                 gTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCAt                                                                        >  2:1774109/1‑93 (MQ=255)

                  tCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATg                                                                       <  2:3589136/93‑1 (MQ=255)

                   cGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGt                                                                      <  2:3768905/93‑1 (MQ=255)

                      tGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGc                                                                   >  1:1732957/1‑93 (MQ=255)

                      tGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGc                                                                   <  2:3463024/93‑1 (MQ=255)

                       taaTGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGcc                                                                  <  1:2768637/92‑1 (MQ=255)

                       gAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGcc                                                                  >  2:4194147/1‑93 (MQ=255)

                           gTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGaa                                                              <  2:3710877/93‑1 (MQ=255)

                           gTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGaa                                                              <  2:516829/93‑1 (MQ=255)

                           gTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGaa                                                              >  2:4306066/1‑93 (MQ=255)

                            tttCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAg                                                             >  1:1012142/1‑93 (MQ=255)

                              tCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCa                                                           <  2:787339/93‑1 (MQ=255)

                              tCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCa                                                           >  2:616963/1‑93 (MQ=255)

                                cGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCaga                                                         <  1:3227209/93‑1 (MQ=255)

                                 gTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCagag                                                        <  1:3550611/93‑1 (MQ=255)

                                  ttGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGc                                                       <  2:3598345/93‑1 (MQ=255)

                                    gCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaa                                                     >  1:1220422/1‑93 (MQ=255)

                                    gCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaa                                                     >  1:3374274/1‑93 (MQ=255)

                                     ccTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaac                                                    >  2:3754733/1‑93 (MQ=255)

                                     ccTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaac                                                    >  2:3172126/1‑93 (MQ=255)

                                      cTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaaca                                                   >  1:2940593/1‑93 (MQ=255)

                                      cTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaaca                                                   >  2:3207355/1‑93 (MQ=255)

                                       tCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAACACAGCATGTTGCCGGAAGCAGAGcaacaa                                                  >  2:2186044/1‑93 (MQ=255)

                                       tCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaacaa                                                  <  1:1836765/93‑1 (MQ=255)

                                       tCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaacaa                                                  >  2:2075481/1‑93 (MQ=255)

                                       tCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaacaa                                                  >  2:3722730/1‑93 (MQ=255)

                                       tCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaacaa                                                  >  2:577042/1‑93 (MQ=255)

                                       tCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGcaacaa                                                  >  1:714342/1‑93 (MQ=255)

                                        cAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCaacaac                                                 <  2:2361176/93‑1 (MQ=255)

                                        cAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCaacaac                                                 <  2:2165971/93‑1 (MQ=255)

                                          gCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGc                                               <  2:2908781/93‑1 (MQ=255)

                                          gCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGc                                               <  1:2417434/93‑1 (MQ=255)

                                          gCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGc                                               <  1:2519114/93‑1 (MQ=255)

                                           cccTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGcc                                              <  1:805375/93‑1 (MQ=255)

                                           cccTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGcc                                              >  1:3839632/1‑93 (MQ=255)

                                            ccTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCt                                             >  2:4377336/1‑93 (MQ=255)

                                             cTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtg                                            >  2:2948287/1‑93 (MQ=255)

                                             cTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtg                                            >  2:844328/1‑93 (MQ=255)

                                             cTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtg                                            <  1:3602132/93‑1 (MQ=255)

                                              tCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgt                                           >  1:976956/1‑93 (MQ=255)

                                              tCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgt                                           >  2:1390493/1‑93 (MQ=255)

                                              tCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgt                                           <  1:249456/93‑1 (MQ=255)

                                              tCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCACGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgt                                           <  1:1915089/93‑1 (MQ=255)

                                               cATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgtt                                          <  1:1054479/93‑1 (MQ=255)

                                                aTTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgttg                                         >  1:1483167/1‑93 (MQ=255)

                                                aTTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAAAGCCtgttg                                         <  2:4571140/93‑1 (MQ=255)

                                                 ttCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgttgt                                        >  1:3252477/1‑93 (MQ=255)

                                                 ttCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgttgt                                        >  1:4039966/1‑93 (MQ=255)

                                                 ttCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCtgttgt                                        >  2:1075245/1‑93 (MQ=255)

                                                  tCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTgttgtt                                       <  1:3968577/93‑1 (MQ=255)

                                                   cTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGttt                                      <  1:3320545/93‑1 (MQ=255)

                                                   cTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGttt                                      <  2:1117235/93‑1 (MQ=255)

                                                   cTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTGGCCGGAAGCAGAGCAACAACGCCTGTTGttt                                      <  2:2553998/93‑1 (MQ=255)

                                                     ttACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGa                                    <  1:310180/93‑1 (MQ=255)

                                                      tACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGaa                                   <  1:65314/93‑1 (MQ=255)

                                                      tACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGaa                                   <  1:433096/93‑1 (MQ=255)

                                                       aCGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAg                                  <  1:2357665/93‑1 (MQ=255)

                                                        cGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAgg                                 <  2:560133/93‑1 (MQ=255)

                                                        cGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAgg                                 <  1:1576523/93‑1 (MQ=255)

                                                         gAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAggc                                >  1:2656326/1‑93 (MQ=255)

                                                           aGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAggcgg                              >  1:2017708/1‑93 (MQ=255)

                                                            gCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAggcggc                             <  2:3956210/93‑1 (MQ=255)

                                                            gCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAggcggc                             >  1:1091420/1‑93 (MQ=255)

                                                             cccAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCt                            <  2:1687278/93‑1 (MQ=255)

                                                             cccAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCt                            >  2:1634166/1‑93 (MQ=255)

                                                              ccAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTa                           >  1:3093304/1‑93 (MQ=255)

                                                              ccAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTa                           >  2:1515318/1‑93 (MQ=255)

                                                              ccAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTa                           >  1:441079/1‑93 (MQ=255)

                                                                  cGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCg                       <  1:4166798/93‑1 (MQ=255)

                                                                   gTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCgg                      >  1:2196686/1‑93 (MQ=255)

                                                                     cAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTg                    <  1:4176049/93‑1 (MQ=255)

                                                                     cAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTg                    <  2:2533491/93‑1 (MQ=255)

                                                                       gCGGCAAAATGCAGTCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCt                  <  1:3077182/93‑1 (MQ=255)

                                                                        cGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTg                 <  2:178529/93‑1 (MQ=255)

                                                                          gCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGc               >  2:2801670/1‑93 (MQ=255)

                                                                            aaaaTGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGa             >  1:3719487/1‑93 (MQ=255)

                                                                             aaaTGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCCGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGaa            >  2:944319/1‑93 (MQ=255)

                                                                              aaTGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGaaa           <  1:2261265/93‑1 (MQ=255)

                                                                              aaTGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGaaa           <  2:659222/93‑1 (MQ=255)

                                                                                 gCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTc        >  1:341258/1‑93 (MQ=255)

                                                                                   aGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGc      >  1:13094/1‑93 (MQ=255)

                                                                                    ggCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCa     >  1:3793619/1‑93 (MQ=255)

ATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGTACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAA  >  NC_000913/3822562‑3822741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGTACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAACGCA  >  NC_000913/3822559‑3822745

CCGATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGC                                                                                               <  SRR4302535.19872/94‑1 (MQ=60)

 CGATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCA                                                                                              >  SRR4302535.3209071/1‑94 (MQ=60)

 CGATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCA                                                                                              >  SRR4302535.2507368/1‑94 (MQ=60)

 CGATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCA                                                                                              <  SRR4302535.486588/94‑1 (MQ=60)

 CGATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCA                                                                                              >  SRR4302535.1148672/1‑94 (MQ=60)

   ATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGAACC                                                                                            >  SRR4302535.2463295/1‑94 (MQ=60)

    TGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCT                                                                                           >  SRR4302535.3798353/1‑94 (MQ=60)

    TGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCT                                                                                           >  SRR4302535.2847706/1‑94 (MQ=60)

     GATCGGCATTGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTG                                                                                          >  SRR4302535.3612059/1‑94 (MQ=60)

     GATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTG                                                                                          <  SRR4302535.3288083/94‑1 (MQ=60)

      ATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGC                                                                                         <  SRR4302535.2511676/94‑1 (MQ=60)

        CGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGT                                                                                       <  SRR4302535.2441038/94‑1 (MQ=60)

           CATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAA                                                                                    >  SRR4302535.60271/1‑94 (MQ=60)

           CATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAA                                                                                    >  SRR4302535.2137073/1‑94 (MQ=60)

           CATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAA                                                                                    >  SRR4302535.3107030/1‑94 (MQ=60)

           CATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAA                                                                                    >  SRR4302535.1255525/1‑94 (MQ=60)

            ATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAA                                                                                   >  SRR4302535.3803937/1‑94 (MQ=60)

            ATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAA                                                                                   >  SRR4302535.2197124/1‑94 (MQ=60)

              GGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAAC                                                                                 <  SRR4302535.1165468/94‑1 (MQ=60)

              GGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAAC                                                                                 <  SRR4302535.529875/94‑1 (MQ=60)

               GTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACA                                                                                <  SRR4302535.4366921/94‑1 (MQ=60)

                TGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAG                                                                               >  SRR4302535.4692626/1‑94 (MQ=60)

                 GCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGC                                                                              <  SRR4302535.4498895/94‑1 (MQ=60)

                  CAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCA                                                                             <  SRR4302535.4549227/94‑1 (MQ=60)

                  CAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCA                                                                             <  SRR4302535.3703514/94‑1 (MQ=60)

                  CAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCA                                                                             <  SRR4302535.37512/94‑1 (MQ=60)

                  CAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCA                                                                             <  SRR4302535.3425430/94‑1 (MQ=60)

                  CAGTCGCTGAATGTTTCCGTTGCCTCAGCCCCCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCA                                                                             <  SRR4302535.2184381/94‑1 (MQ=60)

                   AGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCAT                                                                            >  SRR4302535.2314654/1‑94 (MQ=60)

                   AGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCAT                                                                            >  SRR4302535.2189806/1‑94 (MQ=60)

                   AGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCAT                                                                            <  SRR4302535.3858122/94‑1 (MQ=60)

                   AGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCAT                                                                            >  SRR4302535.33455/1‑94 (MQ=60)

                    GTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATG                                                                           <  SRR4302535.2469710/94‑1 (MQ=60)

                      CGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTT                                                                         <  SRR4302535.2183362/94‑1 (MQ=60)

                      CGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTT                                                                         <  SRR4302535.861045/94‑1 (MQ=60)

                       GCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTG                                                                        <  SRR4302535.1409825/94‑1 (MQ=60)

                        CTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGC                                                                       >  SRR4302535.1745482/1‑94 (MQ=60)

                         TGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCC                                                                      >  SRR4302535.3747854/1‑94 (MQ=60)

                          TAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCG                                                                     <  SRR4302535.2788350/94‑1 (MQ=60)

                            ATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGA                                                                   <  SRR4302535.570506/94‑1 (MQ=60)

                              GTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAG                                                                 >  SRR4302535.1019337/1‑94 (MQ=60)

                              GTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAG                                                                 <  SRR4302535.193537/94‑1 (MQ=60)

                               TTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGC                                                                >  SRR4302535.1356211/1‑94 (MQ=60)

                               TTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGC                                                                <  SRR4302535.4579973/94‑1 (MQ=60)

                                   CGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAG                                                            <  SRR4302535.3249576/94‑1 (MQ=60)

                                   CGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAG                                                            >  SRR4302535.2234081/1‑94 (MQ=60)

                                    GTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGC                                                           <  SRR4302535.2847187/94‑1 (MQ=60)

                                    GTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGC                                                           <  SRR4302535.3575251/94‑1 (MQ=60)

                                    GTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGA                                                           >  SRR4302535.1181691/1‑94 (MQ=60)

                                    GTT‑CCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCA                                                          <  SRR4302535.1737550/94‑1 (MQ=60)

                                      TGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAA                                                         >  SRR4302535.1229170/1‑94 (MQ=60)

                                      TGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAA                                                         >  SRR4302535.3397743/1‑94 (MQ=60)

                                       GCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAAC                                                        >  SRR4302535.2637486/1‑94 (MQ=60)

                                       GCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAAC                                                        <  SRR4302535.1876199/94‑1 (MQ=60)

                                        CCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACA                                                       >  SRR4302535.1573800/1‑94 (MQ=60)

                                        CCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACA                                                       >  SRR4302535.2961269/1‑94 (MQ=60)

                                         CTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAA                                                      >  SRR4302535.719358/1‑94 (MQ=60)

                                          TCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAAC                                                     <  SRR4302535.1850016/94‑1 (MQ=60)

                                          TCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAAC                                                     <  SRR4302535.1923964/94‑1 (MQ=60)

                                          TCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAAC                                                     <  SRR4302535.3258856/94‑1 (MQ=60)

                                           CAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACG                                                    <  SRR4302535.2089260/94‑1 (MQ=60)

                                           CAGCCCTCATTCTTTACGAAGCCCAGCGGCACCGGCGAAATGCAGGCATACACCTGCGTGCAACCAGCATGTTGCCGGACGCAGAGCCACGACG                                                    >  SRR4302535.1831918/1‑94 (MQ=48)

                                             GCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCC                                                  <  SRR4302535.2537269/94‑1 (MQ=60)

                                             GCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCC                                                  <  SRR4302535.2434834/94‑1 (MQ=60)

                                             GCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCC                                                  >  SRR4302535.3866095/1‑94 (MQ=60)

                                              CCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCT                                                 <  SRR4302535.811026/94‑1 (MQ=60)

                                              CCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCT                                                 >  SRR4302535.2428891/1‑94 (MQ=60)

                                              CCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCT                                                 >  SRR4302535.322785/1‑94 (MQ=60)

                                               CCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTG                                                <  SRR4302535.3441122/94‑1 (MQ=60)

                                                CTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGT                                               >  SRR4302535.983892/1‑94 (MQ=60)

                                                CTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGT                                               <  SRR4302535.3627129/94‑1 (MQ=60)

                                                 TCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTT                                              <  SRR4302535.251175/94‑1 (MQ=60)

                                                 TCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTT                                              >  SRR4302535.4186515/1‑94 (MQ=60)

                                                 TCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCACGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTT                                              <  SRR4302535.1928890/94‑1 (MQ=60)

                                                  CATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTG                                             <  SRR4302535.1061979/94‑1 (MQ=60)

                                                  CATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTG                                             >  SRR4302535.1493773/1‑94 (MQ=60)

                                                   ATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGT                                            <  SRR4302535.315018/94‑1 (MQ=60)

                                                   ATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGT                                            <  SRR4302535.700838/94‑1 (MQ=60)

                                                   ATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGT                                            >  SRR4302535.3275072/1‑94 (MQ=60)

                                                   ATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGT                                            >  SRR4302535.3938689/1‑94 (MQ=60)

                                                   ATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGT                                            >  SRR4302535.4067620/1‑94 (MQ=60)

                                                    TTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTT                                           <  SRR4302535.2383842/94‑1 (MQ=60)

                                                     TCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTT                                          <  SRR4302535.1050051/94‑1 (MQ=60)

                                                     TCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTT                                          <  SRR4302535.3995681/94‑1 (MQ=60)

                                                     TCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTT                                          <  SRR4302535.1203541/94‑1 (MQ=60)

                                                      CTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTG                                         <  SRR4302535.2556853/94‑1 (MQ=60)

                                                      CTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTG                                         <  SRR4302535.3343650/94‑1 (MQ=60)

                                                      CTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTG                                         >  SRR4302535.1710429/1‑94 (MQ=60)

                                                      CTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGCTGTTTG                                         >  SRR4302535.3686623/1‑94 (MQ=60)

                                                       TTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGA                                        <  SRR4302535.3385346/94‑1 (MQ=60)

                                                       TTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGA                                        <  SRR4302535.663665/94‑1 (MQ=60)

                                                        TTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAA                                       <  SRR4302535.312332/94‑1 (MQ=60)

                                                         TACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAG                                      <  SRR4302535.436113/94‑1 (MQ=60)

                                                         TACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAG                                      <  SRR4302535.889569/94‑1 (MQ=60)

                                                         TACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAG                                      <  SRR4302535.2310497/94‑1 (MQ=60)

                                                         TACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAG                                      <  SRR4302535.107416/94‑1 (MQ=60)

                                                         TACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAG                                      <  SRR4302535.65805/94‑1 (MQ=60)

                                                          ACGACGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAATCAGAGCAACAACGCCTGTTGTTTGAAGG                                     <  SRR4302535.616973/94‑1 (MQ=60)

                                                          ACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGG                                     <  SRR4302535.2374575/94‑1 (MQ=60)

                                                          ACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGG                                     <  SRR4302535.3421629/94‑1 (MQ=60)

                                                           CGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGC                                    >  SRR4302535.2675360/1‑94 (MQ=60)

                                                           CGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGC                                    <  SRR4302535.1587900/94‑1 (MQ=60)

                                                           CGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGC                                    >  SRR4302535.4064623/1‑94 (MQ=60)

                                                           CGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGC                                    <  SRR4302535.3097379/94‑1 (MQ=60)

                                                             AAGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGG                                  >  SRR4302535.2032244/1‑94 (MQ=60)

                                                              AGCCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGC                                 >  SRR4302535.1099197/1‑94 (MQ=60)

                                                                CCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTA                               >  SRR4302535.3114846/1‑94 (MQ=60)

                                                                CCCAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTA                               >  SRR4302535.444168/1‑94 (MQ=60)

                                                                  CAGCGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATC                             <  SRR4302535.2735452/94‑1 (MQ=60)

                                                                     CGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGG                          >  SRR4302535.2212342/1‑94 (MQ=60)

                                                                     CGTCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGG                          <  SRR4302535.4195326/94‑1 (MQ=60)

                                                                       TCAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTG                        <  SRR4302535.3617701/94‑1 (MQ=60)

                                                                        CAGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGC                       <  SRR4302535.4204634/94‑1 (MQ=60)

                                                                         AGCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCT                      <  SRR4302535.4325669/94‑1 (MQ=60)

                                                                          GCGGCAAAATGCAGTCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTG                     <  SRR4302535.3098648/94‑1 (MQ=60)

                                                                          GCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTG                     <  SRR4302535.3123183/94‑1 (MQ=60)

                                                                          GCGGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTG                     >  SRR4302535.1092718/1‑94 (MQ=60)

                                                                            GGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGC                   <  SRR4302535.4295068/94‑1 (MQ=60)

                                                                            GGCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGC                   <  SRR4302535.3883821/94‑1 (MQ=60)

                                                                             GCAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCG                  <  SRR4302535.4203502/94‑1 (MQ=60)

                                                                              CAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGA                 >  SRR4302535.3745253/1‑94 (MQ=60)

                                                                              CAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGA                 <  SRR4302535.738292/94‑1 (MQ=60)

                                                                              CAAAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGA                 >  SRR4302535.2097687/1‑94 (MQ=60)

                                                                                AAATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAA               >  SRR4302535.1140029/1‑94 (MQ=60)

                                                                                 AATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAG              <  SRR4302535.4144284/94‑1 (MQ=60)

                                                                                 AATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAG              <  SRR4302535.2277373/94‑1 (MQ=60)

                                                                                 AATGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAG              <  SRR4302535.1843119/94‑1 (MQ=60)

                                                                                   TGCAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTC            >  SRR4302535.343624/1‑94 (MQ=60)

                                                                                     CAGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGC          >  SRR4302535.13193/1‑94 (MQ=60)

                                                                                      AGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCA         <  SRR4302535.309896/94‑1 (MQ=60)

                                                                                      AGGCATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCA         >  SRR4302535.3819774/1‑94 (MQ=60)

                                                                                         CATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAA      <  SRR4302535.4518752/94‑1 (MQ=60)

                                                                                         CATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAA      >  SRR4302535.2519653/1‑94 (MQ=60)

                                                                                          ATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAAC     >  SRR4302535.2544993/1‑94 (MQ=60)

                                                                                          ATGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAAC     >  SRR4302535.2416149/1‑94 (MQ=60)

                                                                                           TGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAACG    <  SRR4302535.1148717/94‑1 (MQ=60)

                                                                                           TGCACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAACG    <  SRR4302535.3181487/94‑1 (MQ=60)

                                                                                             CACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAACGCA  >  SRR4302535.3841364/1‑94 (MQ=60)

CCGATGATCGGCATGGTGCAGTCGCTGAATGTTTCCGTTGCCTCAGCCCTCATTCTTTACGAAGCCCAGCGTCAGCGGCAAAATGCAGGCATGTACCTGCGTGAAAACAGCATGTTGCCGGAAGCAGAGCAACAACGCCTGTTGTTTGAAGGCGGCTATCCGGTGCTGGCGAAAGTCGCAAAACGCA  >  NC_000913/3822559‑3822745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`