Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,822,805	T→C	W222R (TGG→CGG)	spoU →	putative RNA methylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,822,805	0	T	C	99.8%	1314.7 / ‑5.5	416	W222R (TGG→CGG)	spoU	putative RNA methylase
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (192/223); total (192/224)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01

Only 100 of 448 total aligned reads displayed.

TATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGTGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAG  >  NC_000913/3822715‑3822894

  tCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGc                                                                                       >  1:4602935/1‑93 (MQ=255)

  tCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGc                                                                                       >  1:2291196/1‑93 (MQ=255)

     ggTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGctac                                                                                    <  1:3268922/93‑1 (MQ=255)

       tGCTGTCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGctacta                                                                                  <  1:3960723/93‑1 (MQ=255)

       tGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGctacta                                                                                  <  2:3324722/93‑1 (MQ=255)

        gCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTAt                                                                                 <  2:3920477/93‑1 (MQ=255)

        gCTGGCGAAAGCCGCAAAACGCAAAGGCCTGCCTTATCCCGACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTAt                                                                                 <  2:2330114/93‑1 (MQ=255)

           ggCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCa                                                                              <  1:7259832/93‑1 (MQ=255)

              gAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGCCTGGCGGGCTACTATGCAGGc                                                                           <  1:1414128/93‑1 (MQ=255)

              gAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGc                                                                           >  1:7517249/1‑93 (MQ=255)

                aaGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCgggggg                                                                         >  1:5821206/1‑90 (MQ=255)

                aaGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTg                                                                         >  2:7762385/1‑93 (MQ=255)

                aaGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTg                                                                         <  2:6763759/93‑1 (MQ=255)

                 agccGCAAAACGCAAAGGCCTGCCTTCTCCCCACGTCAATCAGCAAGGCGAGATCTAAGCTGATGACGCCTGGCGGGCTACTATGCAGGCTGc                                                                        <  1:5690548/90‑1 (MQ=255)

                 aGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGc                                                                        >  2:2181547/1‑93 (MQ=255)

                  gTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCa                                                                       <  2:1187202/93‑1 (MQ=255)

                  gTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCa                                                                       <  2:5964160/93‑1 (MQ=255)

                  gTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCa                                                                       >  1:6937425/1‑93 (MQ=255)

                   tCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAg                                                                      >  2:2040538/1‑93 (MQ=255)

                   tCGCAAAACGCAAACGCCTGCTTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAg                                                                      <  1:2033795/93‑1 (MQ=255)

                    cGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAgg                                                                     >  2:1362334/1‑93 (MQ=255)

                     gCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAggg                                                                    <  1:1116309/93‑1 (MQ=255)

                     gCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAggg                                                                    >  2:4154157/1‑93 (MQ=255)

                       aaaaCGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTa                                                                  >  2:2400349/1‑93 (MQ=255)

                         aaCGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAg                                                                <  1:1814279/93‑1 (MQ=255)

                         aaCGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAg                                                                <  2:7416842/93‑1 (MQ=255)

                          aCGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAgg                                                               >  1:5580136/1‑92 (MQ=255)

                          aCGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGt                                                               <  2:6434703/93‑1 (MQ=255)

                          aCGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGt                                                               <  1:6056708/93‑1 (MQ=255)

                             cAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAATCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGcc                                                            <  2:4678229/93‑1 (MQ=255)

                             cAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTggc                                                            >  2:7109489/1‑91 (MQ=255)

                              aaaGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCa                                                           >  1:5017196/1‑93 (MQ=255)

                              aaaGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTCGCGTGCTACCATGCCGGCTGCATCGTCAGTGACa                                                           >  2:567053/1‑93 (MQ=255)

                               aaGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCAt                                                          <  2:4080733/93‑1 (MQ=255)

                                aGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATg                                                         <  1:3705344/93‑1 (MQ=255)

                                aGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGGAAGTGCCATg                                                         >  2:3390864/1‑93 (MQ=255)

                                   cctgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGaaa                                                      >  1:4499931/1‑93 (MQ=255)

                                   cctgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGaaa                                                      <  1:7692434/93‑1 (MQ=255)

                                   cctgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGaaa                                                      <  2:4760226/93‑1 (MQ=255)

                                    ctgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAg                                                     <  1:6105929/93‑1 (MQ=255)

                                    ctgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCGACTATGCAGGCTGAAGGGGAAGCGCCCTGgaaa                                                     >  1:3113331/1‑92 (MQ=255)

                                     tgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAgg                                                    <  2:4364248/93‑1 (MQ=255)

                                     tgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAgg                                                    <  2:7935984/93‑1 (MQ=255)

                                     tgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAgg                                                    >  1:86025/1‑93 (MQ=255)

                                     tgcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAgg                                                    >  1:1185206/1‑93 (MQ=255)

                                      gcctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGt                                                   <  1:1531475/93‑1 (MQ=255)

                                        ctTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCg                                                 <  1:6480620/93‑1 (MQ=255)

                                         ttATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGc                                                >  1:3909818/1‑93 (MQ=255)

                                           aTCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCt                                              <  2:5437/93‑1 (MQ=255)

                                            tCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTg                                             <  1:4186589/93‑1 (MQ=255)

                                            tCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTg                                             <  1:3435334/93‑1 (MQ=255)

                                             ccccACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGt                                            >  2:6813720/1‑93 (MQ=255)

                                              cccACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGtt                                           <  2:1494568/93‑1 (MQ=255)

                                               ccACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTa                                          <  1:276393/93‑1 (MQ=255)

                                                cACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAg                                         >  1:304056/1‑93 (MQ=255)

                                                 gcgacAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGa                                        <  2:5862543/89‑1 (MQ=255)

                                                 ccGTCAATCAGCAAGGCGAGATTGAAGCTGATGCCGACGGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGa                                        <  1:2517515/92‑1 (MQ=255)

                                                 aCGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGa                                        >  2:764103/1‑93 (MQ=255)

                                                 aCGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGGAAGGGCCATGCAAAGTCGCCTGTTAGa                                        >  2:4983117/1‑93 (MQ=255)

                                                   gTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGGAAGGGCCATGAAAGGTCGCCTGTTAGATg                                      >  2:5591814/1‑93 (MQ=255)

                                                     cAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCt                                    >  2:6523520/1‑93 (MQ=255)

                                                          aGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGCAAGGTCGCCTGTTAGATGCTGTccc                               >  1:2863959/1‑93 (MQ=255)

                                                           gCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTTGAAGCTGTcccc                              >  2:7043436/1‑92 (MQ=255)

                                                           gCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCa                              >  1:900974/1‑93 (MQ=255)

                                                           gCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCa                              >  2:7347765/1‑93 (MQ=255)

                                                            cAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCAc                             <  1:1687527/93‑1 (MQ=255)

                                                            cAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCAc                             <  1:1017777/93‑1 (MQ=255)

                                                            cAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCAc                             <  2:2609089/93‑1 (MQ=255)

                                                              aGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGGAAGGTGCGCTGTTAGATGGTGTCCCagta                           >  2:1082553/1‑90 (MQ=255)

                                                                gCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAg                         <  2:6139356/93‑1 (MQ=255)

                                                                gCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAg                         <  1:4351793/93‑1 (MQ=255)

                                                                  gagaTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGtt                       <  1:970416/93‑1 (MQ=255)

                                                                  gagaTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGtt                       <  1:2659665/93‑1 (MQ=255)

                                                                  gagaTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGtt                       >  1:3521007/1‑93 (MQ=255)

                                                                  gagaTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGtt                       >  1:320439/1‑93 (MQ=255)

                                                                    gaTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTcc                     <  2:3563733/93‑1 (MQ=255)

                                                                     aTCGAAGCTGGTGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTccc                    <  2:1852552/93‑1 (MQ=255)

                                                                     aTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTccc                    <  2:5189462/93‑1 (MQ=255)

                                                                     aTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTccc                    <  2:1653671/93‑1 (MQ=255)

                                                                     aTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTccc                    >  1:2926396/1‑93 (MQ=255)

                                                                     aTCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTccc                    >  1:702725/1‑93 (MQ=255)

                                                                        gAAGATGATGCCGACTGGCGGGCTACTATGCAGGCTGCTGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTaa                 >  1:7837587/1‑93 (MQ=255)

                                                                         aaGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAAc                <  1:3601496/93‑1 (MQ=255)

                                                                         aaGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAAc                <  2:5286754/93‑1 (MQ=255)

                                                                         aaGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAAc                >  1:6692366/1‑93 (MQ=255)

                                                                         aaGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAAc                >  1:6296884/1‑93 (MQ=255)

                                                                           gCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACgg              <  1:483075/93‑1 (MQ=255)

                                                                            cTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACggg             >  2:2973000/1‑93 (MQ=255)

                                                                            cTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACggg             <  2:6223326/93‑1 (MQ=255)

                                                                             tGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGc            >  2:3656002/1‑93 (MQ=255)

                                                                              gATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCg           >  2:3049132/1‑93 (MQ=255)

                                                                               aTGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGt          <  2:2666733/93‑1 (MQ=255)

                                                                                  ccGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTgg       <  1:5419131/93‑1 (MQ=255)

                                                                                  ccGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTgg       <  1:2619857/93‑1 (MQ=255)

                                                                                   cGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGgc      <  2:4577047/93‑1 (MQ=255)

                                                                                   cGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGgc      <  2:5730099/93‑1 (MQ=255)

                                                                                   cGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGgc      >  2:490656/1‑93 (MQ=255)

                                                                                    gACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGgcg     >  1:4688185/1‑93 (MQ=255)

                                                                                      cTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCgca   >  2:830292/1‑93 (MQ=255)

                                                                                       tggcggGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCgcag  >  1:7412116/1‑93 (MQ=255)

TATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGTGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAG  >  NC_000913/3822715‑3822894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 240 total aligned reads displayed.

GGCTATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGTGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGCACT  >  NC_000913/3822712‑3822898

GGCTATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGC                                                                                               >  SRR4302543.2006491/1‑94 (MQ=60)

 GCTATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCG                                                                                              <  SRR4302543.5829893/94‑1 (MQ=60)

  GTATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGG                                                                                             <  SRR4302543.5747589/94‑1 (MQ=60)

   TATCCGGTGCTGGCGAAAGTCGCAAAACGCCAAGGCCTGCCTTATCCCCAGGTCCATCAGCAAGGCGAGATCGAAGCTGAGGCCGACTGGGGGG                                                                                            >  SRR4302543.4713351/1‑94 (MQ=60)

   TATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGG                                                                                            <  SRR4302543.6157656/94‑1 (MQ=60)

   TATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGG                                                                                            >  SRR4302543.506220/1‑94 (MQ=60)

    ATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGC                                                                                           >  SRR4302543.2312107/1‑94 (MQ=60)

    ATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGC                                                                                           >  SRR4302543.4644753/1‑94 (MQ=60)

    ATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGC                                                                                           >  SRR4302543.1514981/1‑94 (MQ=60)

    ATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGC                                                                                           >  SRR4302543.1633379/1‑94 (MQ=60)

     TCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCT                                                                                          <  SRR4302543.4993556/94‑1 (MQ=60)

     TCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCT                                                                                          <  SRR4302543.4993557/94‑1 (MQ=60)

     TCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCT                                                                                          <  SRR4302543.2867735/94‑1 (MQ=60)

     TCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCT                                                                                          >  SRR4302543.5161168/1‑94 (MQ=60)

      CCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTA                                                                                         <  SRR4302543.1130091/94‑1 (MQ=60)

       CGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTAC                                                                                        >  SRR4302543.340107/1‑94 (MQ=60)

       CGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTAC                                                                                        >  SRR4302543.6451671/1‑94 (MQ=60)

        GGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACT                                                                                       <  SRR4302543.3298457/94‑1 (MQ=60)

        GGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACT                                                                                       >  SRR4302543.2752439/1‑94 (MQ=60)

        GGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACT                                                                                       >  SRR4302543.3109940/1‑94 (MQ=60)

         GTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTA                                                                                      <  SRR4302543.3212413/94‑1 (MQ=60)

         GTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGAAAGGCGAGATCGCAGCTGATGCCGACGGGCGGGGTACTA                                                                                      >  SRR4302543.3266136/1‑94 (MQ=60)

          TGCTGTCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTAT                                                                                     <  SRR4302543.3995799/94‑1 (MQ=60)

          TGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTAT                                                                                     <  SRR4302543.4229496/94‑1 (MQ=60)

          TGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTAT                                                                                     <  SRR4302543.6547599/94‑1 (MQ=60)

          TGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTAT                                                                                     <  SRR4302543.7079947/94‑1 (MQ=60)

           GCTGGCGCAAGTCGCAAAACGCAAAGGGCTGCCTTATCCCCAAGTCCATCAGCAAGACGAGATCGAAGATGATGCCGACTGGCGGGCCACTATG                                                                                    >  SRR4302543.287789/1‑94 (MQ=60)

           GCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATG                                                                                    >  SRR4302543.287790/1‑94 (MQ=60)

           GCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATG                                                                                    <  SRR4302543.3571601/94‑1 (MQ=60)

           GCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATG                                                                                    <  SRR4302543.7613664/94‑1 (MQ=60)

           GCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATG                                                                                    <  SRR4302543.2321182/94‑1 (MQ=60)

           GCTGCCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATG                                                                                    <  SRR4302543.3680738/94‑1 (MQ=60)

            CTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTCTGC                                                                                   >  SRR4302543.5781847/1‑94 (MQ=60)

            CTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGC                                                                                   <  SRR4302543.4642200/94‑1 (MQ=60)

             TGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCA                                                                                  >  SRR4302543.7298561/1‑94 (MQ=60)

             TGGCGAAAGTCGCAAAACGCAAAGGCCTGCCATATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCA                                                                                  <  SRR4302543.5431343/94‑1 (MQ=60)

              GGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAG                                                                                 <  SRR4302543.7329994/94‑1 (MQ=60)

              GGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAG                                                                                 <  SRR4302543.2979873/94‑1 (MQ=60)

              GGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAG                                                                                 <  SRR4302543.5137870/94‑1 (MQ=60)

                CGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGC                                                                               >  SRR4302543.5642616/1‑94 (MQ=60)

                CGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGC                                                                               >  SRR4302543.265310/1‑94 (MQ=60)

                 GAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGCCTGGCGGGCTACTATGCAGGCT                                                                              <  SRR4302543.1426927/94‑1 (MQ=60)

                 GAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCT                                                                              <  SRR4302543.1774645/94‑1 (MQ=60)

                  AAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCgggggg                                                                             >  SRR4302543.5874143/1‑88 (MQ=60)

                  AAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTG                                                                             >  SRR4302543.969097/1‑94 (MQ=60)

                  AAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTG                                                                             >  SRR4302543.8008037/1‑94 (MQ=60)

                    AGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCA                                                                           >  SRR4302543.7002681/1‑94 (MQ=60)

                    AGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTAATATGCAGGCTGCA                                                                           >  SRR4302543.4060594/1‑94 (MQ=60)

                    AGCCGCAAAACGCAAAGGCCTGCCTTCTCCCCACGTCAATCAGCAAGGCGAGATCTAAGCTGATGACGCCTGGCGGGCTACTATGCAGGCTGCA                                                                           <  SRR4302543.5742482/94‑1 (MQ=60)

                     GTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGCGATCGAAGCTGAGGCCGACTGGCGGGCTACTATGCAGGCTGCAG                                                                          >  SRR4302543.3788019/1‑94 (MQ=60)

                     GTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAG                                                                          >  SRR4302543.3788020/1‑94 (MQ=60)

                     GTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAG                                                                          >  SRR4302543.2801971/1‑94 (MQ=60)

                     GTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAG                                                                          >  SRR4302543.333290/1‑94 (MQ=60)

                      TCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGG                                                                         <  SRR4302543.2559002/94‑1 (MQ=60)

                      TCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGG                                                                         <  SRR4302543.2559001/94‑1 (MQ=60)

                      TCGCAAAACGCAAACGCCTGCTTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGG                                                                         <  SRR4302543.2052061/94‑1 (MQ=60)

                       CGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGG                                                                        >  SRR4302543.2971930/1‑94 (MQ=60)

                        GCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGT                                                                       <  SRR4302543.7529814/94‑1 (MQ=60)

                         CAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTA                                                                      >  SRR4302543.7902996/1‑94 (MQ=60)

                         CAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTA                                                                      <  SRR4302543.3548342/94‑1 (MQ=60)

                         CAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTA                                                                      >  SRR4302543.1548990/1‑94 (MQ=60)

                          AAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAA                                                                     <  SRR4302543.5699196/94‑1 (MQ=60)

                          AAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAA                                                                     >  SRR4302543.5345304/1‑94 (MQ=60)

                          AAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAA                                                                     >  SRR4302543.680022/1‑94 (MQ=60)

                           AAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAG                                                                    >  SRR4302543.7401114/1‑94 (MQ=60)

                           AAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAG                                                                    <  SRR4302543.7444525/94‑1 (MQ=60)

                           AAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAG                                                                    <  SRR4302543.2493411/94‑1 (MQ=60)

                            AACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGT                                                                   <  SRR4302543.7587261/94‑1 (MQ=60)

                            AACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGT                                                                   <  SRR4302543.1830554/94‑1 (MQ=60)

                            AACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGG                                                                   >  SRR4302543.5630935/1‑94 (MQ=60)

                             ACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTG                                                                  <  SRR4302543.6114042/94‑1 (MQ=60)

                              CGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGC                                                                 <  SRR4302543.355203/94‑1 (MQ=60)

                               GCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCC                                                                >  SRR4302543.4524465/1‑94 (MQ=60)

                                CAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGACGACTGGCGGGCTACTAattaggctggagggaaagcggca                                                               >  SRR4302543.1721133/1‑71 (MQ=60)

                                   AGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGA                                                            <  SRR4302543.1683790/94‑1 (MQ=60)

                                   AGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGA                                                            <  SRR4302543.3481563/94‑1 (MQ=60)

                                   AGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGA                                                            <  SRR4302543.4169308/94‑1 (MQ=60)

                                   AGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGA                                                            <  SRR4302543.3737909/94‑1 (MQ=60)

                                   AGGCCTGCCTGATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGA                                                            <  SRR4302543.4792284/94‑1 (MQ=60)

                                    GGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAA                                                           <  SRR4302543.5926404/94‑1 (MQ=60)

                                     GCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAA                                                          <  SRR4302543.4640373/94‑1 (MQ=60)

                                      CCTGCCTTATCGCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAG                                                         <  SRR4302543.2781326/94‑1 (MQ=60)

                                      CCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAG                                                         >  SRR4302543.587342/1‑94 (MQ=60)

                                      CCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAG                                                         <  SRR4302543.2952772/94‑1 (MQ=60)

                                      CCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAG                                                         <  SRR4302543.7765263/94‑1 (MQ=60)

                                      CCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCGACTATGCAGGCTGaaggggaagcgccctggaaa                                                         >  SRR4302543.3141336/1‑74 (MQ=60)

                                       CTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGG                                                        >  SRR4302543.86820/1‑94 (MQ=60)

                                       CTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGG                                                        >  SRR4302543.3955144/1‑94 (MQ=60)

                                       CTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGG                                                        <  SRR4302543.4513959/94‑1 (MQ=60)

                                       CTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGG                                                        <  SRR4302543.6163778/94‑1 (MQ=60)

                                       CTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGG                                                        >  SRR4302543.1195904/1‑94 (MQ=60)

                                       CTGCCTTATCCCCACGTCAATAAGCAAGGCGAAATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAAGCAGCAGGGTAAGTGCCATGAAAGG                                                        >  SRR4302543.2387028/1‑94 (MQ=60)

                                         GCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTC                                                      <  SRR4302543.1545205/94‑1 (MQ=60)

                                         GCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTC                                                      <  SRR4302543.921468/94‑1 (MQ=60)

                                          CCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCG                                                     <  SRR4302543.3962378/94‑1 (MQ=60)

                                           CTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGC                                                    <  SRR4302543.7529834/94‑1 (MQ=60)

                                           CTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGC                                                    <  SRR4302543.6541679/94‑1 (MQ=60)

                                           CTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGC                                                    >  SRR4302543.3944335/1‑94 (MQ=60)

                                           CTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGGCGC                                                    >  SRR4302543.3111313/1‑94 (MQ=60)

                                            TTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCC                                                   <  SRR4302543.1106824/94‑1 (MQ=60)

                                             TATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCTACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCT                                                  <  SRR4302543.6256595/94‑1 (MQ=60)

                                             TATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCT                                                  <  SRR4302543.619158/94‑1 (MQ=60)

                                             TATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCT                                                  <  SRR4302543.5594533/94‑1 (MQ=60)

                                             TATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCT                                                  <  SRR4302543.6350919/94‑1 (MQ=60)

                                             TATCCCCACGACAATCAGCAGGGCGAGATCGAAGCTGATGCCGACTGACGGGCTACTATGCAGGCTACAGGGTAAGTGCCATGAAAGGTAGCCT                                                  <  SRR4302543.7061618/94‑1 (MQ=60)

                                              ATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTG                                                 >  SRR4302543.41999/1‑94 (MQ=60)

                                               TCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGT                                                <  SRR4302543.4224546/94‑1 (MQ=60)

                                               TCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGT                                                >  SRR4302543.7838924/1‑94 (MQ=60)

                                               TCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGT                                                <  SRR4302543.1625402/94‑1 (MQ=60)

                                               TCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGT                                                <  SRR4302543.3466085/94‑1 (MQ=60)

                                                CCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGTGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTT                                               <  SRR4302543.7627447/94‑1 (MQ=60)

                                                CCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTT                                               <  SRR4302543.891681/94‑1 (MQ=60)

                                                CCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTT                                               >  SRR4302543.1139935/1‑94 (MQ=60)

                                                CCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTT                                               >  SRR4302543.17087/1‑94 (MQ=60)

                                                 CCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTA                                              >  SRR4302543.826751/1‑94 (MQ=60)

                                                  CCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGTTACTATGCAGGCTGCAGGGacagtgccacgacacggcacctgtgtg                                             >  SRR4302543.306806/1‑67 (MQ=60)

                                                  CCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAG                                             <  SRR4302543.6144449/94‑1 (MQ=60)

                                                  CCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAG                                             <  SRR4302543.278833/94‑1 (MQ=60)

                                                  CCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAG                                             >  SRR4302543.306805/1‑94 (MQ=60)

                                                   CACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGA                                            >  SRR4302543.6423656/1‑94 (MQ=60)

                                                   CACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGA                                            >  SRR4302543.4624112/1‑94 (MQ=60)

                                                    CCGTCAATCAGCAAGGCGAGATTGAAGCTGATGCCGACGGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGAT                                           <  SRR4302543.2540383/94‑1 (MQ=60)

                                                    ACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGAT                                           >  SRR4302543.2968925/1‑94 (MQ=60)

                                                    ACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGAT                                           <  SRR4302543.2540386/94‑1 (MQ=60)

                                                    ACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGAT                                           >  SRR4302543.8982/1‑94 (MQ=60)

                                                     CGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATG                                          <  SRR4302543.2659506/94‑1 (MQ=60)

                                                     CGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATG                                          >  SRR4302543.4694997/1‑94 (MQ=60)

                                                     CGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATG                                          <  SRR4302543.3608625/94‑1 (MQ=60)

                                                        CAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTG                                       >  SRR4302543.6746500/1‑94 (MQ=60)

                                                        CAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTG                                       <  SRR4302543.6565283/94‑1 (MQ=60)

                                                        CAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTG                                       <  SRR4302543.1791983/94‑1 (MQ=60)

                                                         AATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGT                                      <  SRR4302543.1294708/94‑1 (MQ=60)

                                                         AATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTAT                                      >  SRR4302543.4354883/1‑94 (MQ=60)

                                                          ATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTC                                     <  SRR4302543.219672/94‑1 (MQ=60)

                                                          ATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTC                                     >  SRR4302543.6991485/1‑94 (MQ=60)

                                                          ATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTC                                     >  SRR4302543.6044844/1‑94 (MQ=60)

                                                            CAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGCAAGGTCGCCTGTTAGATGCTGTCCC                                   >  SRR4302543.2890066/1‑94 (MQ=60)

                                                            CAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCC                                   >  SRR4302543.4507774/1‑94 (MQ=60)

                                                            CAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCC                                   >  SRR4302543.1166397/1‑94 (MQ=60)

                                                            CAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCC                                   >  SRR4302543.2647756/1‑94 (MQ=60)

                                                            CAGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGGAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCC                                   >  SRR4302543.5643188/1‑94 (MQ=60)

                                                             AGCAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACCATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCA                                  >  SRR4302543.1868869/1‑94 (MQ=60)

                                                               CAAGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACT                                <  SRR4302543.1026778/94‑1 (MQ=60)

                                                               AAAGGCGCGATCGAAGCTGATGCCGACTCGCAGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACT                                <  SRR4302543.1026781/94‑1 (MQ=60)

                                                                 AGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCCCTCA                              >  SRR4302543.1338882/1‑94 (MQ=60)

                                                                 AGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCA                              >  SRR4302543.562189/1‑94 (MQ=60)

                                                                 AGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCA                              >  SRR4302543.266151/1‑94 (MQ=60)

                                                                 AGGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGGAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCA                              >  SRR4302543.764853/1‑94 (MQ=60)

                                                                  GGCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAG                             <  SRR4302543.1401589/94‑1 (MQ=60)

                                                                   GCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGT                            <  SRR4302543.4391235/94‑1 (MQ=60)

                                                                   GCGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGT                            <  SRR4302543.6661614/94‑1 (MQ=60)

                                                                    CGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTT                           >  SRR4302543.4549988/1‑94 (MQ=60)

                                                                    CGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTT                           >  SRR4302543.3552425/1‑94 (MQ=60)

                                                                    CGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTT                           >  SRR4302543.3297467/1‑94 (MQ=60)

                                                                    CGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTT                           >  SRR4302543.323338/1‑94 (MQ=60)

                                                                    CGAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTT                           <  SRR4302543.2009815/94‑1 (MQ=60)

                                                                     GAGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTC                          <  SRR4302543.978952/94‑1 (MQ=60)

                                                                      AGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCC                         <  SRR4302543.148233/94‑1 (MQ=60)

                                                                      AGATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCC                         >  SRR4302543.7129248/1‑94 (MQ=60)

                                                                       GATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCC                        >  SRR4302543.2952979/1‑94 (MQ=60)

                                                                       GATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCC                        >  SRR4302543.709138/1‑94 (MQ=60)

                                                                       GATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGAAGGGTAAGGGCCATTAAAGGCCGCCTGTTAGATGCTttccccaccatttccc                        >  SRR4302543.2676216/1‑78 (MQ=60)

                                                                        ATTGAAGCTGATGCCGACTGGCGGGCTACTATGTAGGCTGCAGGGGAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGGCCCCCTCAGTTCCCT                       >  SRR4302543.7092882/1‑94 (MQ=60)

                                                                        ATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCT                       <  SRR4302543.4857650/94‑1 (MQ=60)

                                                                        ATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCT                       >  SRR4302543.371303/1‑94 (MQ=60)

                                                                        ATCGAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCT                       <  SRR4302543.110706/94‑1 (MQ=60)

                                                                          CGAAGATGATGCCGACTGGCGGGCTACTATGCAGGCTGCTGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAA                     >  SRR4302543.7911352/1‑94 (MQ=60)

                                                                           GAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAAC                    >  SRR4302543.6356152/1‑94 (MQ=60)

                                                                           GAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAAC                    <  SRR4302543.7598322/94‑1 (MQ=60)

                                                                           GAAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAAC                    <  SRR4302543.3232150/94‑1 (MQ=60)

                                                                            AAGCTGATGCCGCCTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCCGTTCCCTAACG                   >  SRR4302543.330033/1‑94 (MQ=60)

                                                                            AAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACG                   <  SRR4302543.3633279/94‑1 (MQ=60)

                                                                            AAGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACG                   <  SRR4302543.3809020/94‑1 (MQ=60)

                                                                             AGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGG                  <  SRR4302543.7996002/94‑1 (MQ=60)

                                                                             AGCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGG                  <  SRR4302543.2285926/94‑1 (MQ=60)

                                                                              GCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGG                 <  SRR4302543.9636/94‑1 (MQ=60)

                                                                              GCTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGG                 <  SRR4302543.487536/94‑1 (MQ=60)

                                                                               CTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGC                <  SRR4302543.1935972/94‑1 (MQ=60)

                                                                               CTGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGC                >  SRR4302543.2703912/1‑94 (MQ=60)

                                                                                TGATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCG               <  SRR4302543.5865025/94‑1 (MQ=60)

                                                                                  ATGCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTT             >  SRR4302543.3193947/1‑94 (MQ=60)

                                                                                    GCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGG           <  SRR4302543.3566460/94‑1 (MQ=60)

                                                                                    GCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGG           >  SRR4302543.397306/1‑94 (MQ=60)

                                                                                    GCCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGG           <  SRR4302543.6759147/94‑1 (MQ=60)

                                                                                     CCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGC          <  SRR4302543.6045647/94‑1 (MQ=60)

                                                                                     CCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGC          <  SRR4302543.5468411/94‑1 (MQ=60)

                                                                                     CCGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGC          <  SRR4302543.7342426/94‑1 (MQ=60)

                                                                                      CGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCG         >  SRR4302543.4730968/1‑94 (MQ=60)

                                                                                      CGACTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCG         >  SRR4302543.291914/1‑94 (MQ=60)

                                                                                        ACTGGCGGGCTACTATGCAGGCTGCAGGGGAAGTGGCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCG       >  SRR4302543.5686142/1‑94 (MQ=60)

                                                                                         CTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAG      <  SRR4302543.4802541/94‑1 (MQ=60)

                                                                                         CTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAG      >  SRR4302543.7483237/1‑94 (MQ=60)

                                                                                         CTGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAG      >  SRR4302543.944873/1‑94 (MQ=60)

                                                                                          TGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGC     <  SRR4302543.87134/94‑1 (MQ=60)

                                                                                          TGGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGC     >  SRR4302543.7275268/1‑94 (MQ=60)

                                                                                           GGCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGCA    <  SRR4302543.1027932/94‑1 (MQ=60)

                                                                                           GGCGGGCTACTATGCAGGCTGCAGGGGAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGCA    <  SRR4302543.572241/94‑1 (MQ=60)

                                                                                            GCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCCCTCAGTTCCCTAACGGGCGTTGGCGCAGCAC   <  SRR4302543.6198207/94‑1 (MQ=60)

                                                                                            GCGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGCAC   <  SRR4302543.6198206/94‑1 (MQ=60)

                                                                                             CGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGCACT  <  SRR4302543.6982423/94‑1 (MQ=60)

GGCTATCCGGTGCTGGCGAAAGTCGCAAAACGCAAAGGCCTGCCTTATCCCCACGTCAATCAGCAAGGCGAGATCGAAGCTGATGCCGACTGGTGGGCTACTATGCAGGCTGCAGGGTAAGTGCCATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGCACT  >  NC_000913/3822712‑3822898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`