Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,829,419 |
C→T |
R446C (CGC→TGC) |
yicH → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,829,419 | 0 | C | T | 99.6%
| 831.8
/ NA
| 232 | R446C (CGC→TGC) | yicH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (87/144); minor base G (0/1); total (87/145) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 256 total aligned reads displayed.
ACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACC > NC_000913/3829329‑3829508
|
aCGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGc < 1:2978015/93‑1 (MQ=255)
cTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGGTTTTCGTTGGCCg > 2:2425151/1‑93 (MQ=255)
cTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCg > 2:4625693/1‑93 (MQ=255)
tGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTTGTTGCCCGt > 2:3234695/1‑93 (MQ=255)
tGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGt < 2:3035594/93‑1 (MQ=255)
ttACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTTGTTGCCCGTCGc > 2:307767/1‑93 (MQ=255)
ttACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGc > 1:128100/1‑93 (MQ=255)
ttACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGGTTATGTTCGTTGCCCGTCGc > 2:1168280/1‑93 (MQ=255)
tACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTTATGTTCGTTGCCCGTCGCt < 1:1424503/93‑1 (MQ=255)
aCCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTg < 1:4254507/93‑1 (MQ=255)
ccGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTgg < 1:4326035/93‑1 (MQ=255)
gATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTTGTTGGCCGTCGCTGgcg > 2:3225449/1‑93 (MQ=255)
gATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTCCCCGTCGCTGgcg > 1:3006560/1‑93 (MQ=255)
aTCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGgcgc < 2:4317942/93‑1 (MQ=255)
aTCATAAATGGGGCGTATGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGgcgc < 1:2967117/93‑1 (MQ=255)
tCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCt > 2:3396141/1‑93 (MQ=255)
tAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAc > 1:2223131/1‑93 (MQ=255)
tAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAc > 2:1755399/1‑93 (MQ=255)
aaaaGGGGGCGTCGGGGGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAc < 2:2928525/92‑1 (MQ=255)
aaTGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAccc > 1:3621144/1‑92 (MQ=255)
tGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAACGcc > 1:1956472/1‑93 (MQ=255)
tGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTATTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGcc < 1:4230226/93‑1 (MQ=255)
gggCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCaa < 2:1468550/93‑1 (MQ=255)
gggCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCaa < 2:775074/93‑1 (MQ=255)
ggCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAc < 1:2125935/93‑1 (MQ=255)
gCGTCTGGAGTGGCTCGGCGAATCTGAGTGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAca < 1:544079/93‑1 (MQ=255)
gCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGGCAAca > 1:950497/1‑93 (MQ=255)
gCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAca < 2:3571617/93‑1 (MQ=255)
gCGTCTGGAGTGGCTCGGCAAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAca < 2:3512861/93‑1 (MQ=255)
gTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAcagc < 1:1675356/93‑1 (MQ=255)
gTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAcagc > 1:3329696/1‑93 (MQ=255)
gTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAcagc > 1:2567169/1‑93 (MQ=255)
tCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCCAcagca > 2:2512630/1‑93 (MQ=255)
tGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACagcagc > 2:1068238/1‑93 (MQ=255)
ggAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTTACCGCCAACAgcagca > 2:2769725/1‑93 (MQ=255)
ggAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAgcagca > 2:2890538/1‑93 (MQ=255)
gAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGCCCGCCAACAGCAGCAc < 2:711061/93‑1 (MQ=255)
gAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCAc < 1:1025930/93‑1 (MQ=255)
gTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACgg < 2:1234738/93‑1 (MQ=255)
ggCTCGCCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTg < 2:2317549/93‑1 (MQ=255)
tCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAat > 2:1082591/1‑93 (MQ=255)
cGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAata > 2:3987377/1‑93 (MQ=255)
ggCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAatat < 2:475422/93‑1 (MQ=255)
gCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAatata > 2:2011983/1‑92 (MQ=255)
gCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATc < 2:2670328/93‑1 (MQ=255)
gCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATc < 1:2835545/93‑1 (MQ=255)
cGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCa > 2:1212896/1‑93 (MQ=255)
gAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAg > 1:3208921/1‑93 (MQ=255)
gAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAg < 1:1333353/93‑1 (MQ=255)
aaTCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGc < 2:3758560/93‑1 (MQ=255)
aaTCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGc < 1:1040538/93‑1 (MQ=255)
aaTCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGc > 1:2080464/1‑93 (MQ=255)
aaTCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGc > 1:2357116/1‑93 (MQ=255)
aTCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCg > 2:3549140/1‑93 (MQ=255)
cTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGaa < 1:4182739/93‑1 (MQ=255)
tGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAAc < 1:649667/93‑1 (MQ=255)
gAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACt < 1:944209/93‑1 (MQ=255)
aTGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGa > 2:602751/1‑93 (MQ=255)
aTGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGa > 2:163165/1‑93 (MQ=255)
gccgccgccGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGt < 1:1853690/93‑1 (MQ=255)
gccgccgccGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGt < 1:2938267/93‑1 (MQ=255)
gccgccgccGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGt < 1:459896/93‑1 (MQ=255)
cgccgccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGc < 1:4064599/93‑1 (MQ=255)
cgccgccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGc < 1:2485025/93‑1 (MQ=255)
gccgccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCa < 1:1094427/93‑1 (MQ=255)
cgccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCAtt < 2:1867503/93‑1 (MQ=255)
ccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTa < 1:3383030/93‑1 (MQ=255)
ccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTa < 2:2626007/93‑1 (MQ=255)
ccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTa < 1:4533769/93‑1 (MQ=255)
ccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTa < 2:3718216/93‑1 (MQ=255)
ccgcGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTa > 2:1289253/1‑93 (MQ=255)
cgcgACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTAc < 1:2695361/93‑1 (MQ=255)
cgcgACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTAc < 2:3360385/93‑1 (MQ=255)
gcgACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACt < 2:2500235/93‑1 (MQ=255)
gcgACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACt > 1:3943636/1‑93 (MQ=255)
gcgACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACt > 1:3026203/1‑93 (MQ=255)
cgACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTg > 1:760611/1‑93 (MQ=255)
aCATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGaa > 1:3042268/1‑93 (MQ=255)
aTTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGaaaa < 1:1630058/93‑1 (MQ=255)
aTTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGaaaa > 1:3742060/1‑93 (MQ=255)
ttCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGaaaaa > 1:2321920/1‑93 (MQ=255)
ttCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGaaaaa < 1:850892/93‑1 (MQ=255)
ttCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGaaaaa < 2:1600199/93‑1 (MQ=255)
tCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGCACTGAGTGCATTTACTGAAAAAg < 1:402580/93‑1 (MQ=255)
tCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAg < 1:1157292/93‑1 (MQ=255)
tCAATCGTGTTGATGTTCGTTGCCCGTCGCTAGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAg < 1:2524531/93‑1 (MQ=255)
aaTCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGc < 2:1938573/93‑1 (MQ=255)
aTCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCa < 2:2220915/93‑1 (MQ=255)
tCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCAt > 1:3900723/1‑93 (MQ=255)
cGTGTTGATGTTCGTTGCCCGTCGCTGGTGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCAtt < 2:3854179/93‑1 (MQ=255)
gtgtTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTc < 2:2956589/93‑1 (MQ=255)
gtgtTGATGTTCGTTGCCCGGCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCAtgc < 2:2988201/93‑3 (MQ=255)
tgtTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCt < 1:1262568/93‑1 (MQ=255)
gtTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTg > 1:4381762/1‑93 (MQ=255)
ttGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTgg > 2:93614/1‑93 (MQ=255)
ttGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTgg > 1:1797309/1‑93 (MQ=255)
gATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGaa < 2:2139057/93‑1 (MQ=255)
tGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGc < 2:2090118/93‑1 (MQ=255)
tGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGc > 1:891375/1‑93 (MQ=255)
tcgttgCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCAc < 2:4430886/93‑1 (MQ=255)
|
ACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACC > NC_000913/3829329‑3829508
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCA > NC_000913/3829326‑3829512
|
CTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTT > SRR4302535.2664418/1‑94 (MQ=60)
CTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTT < SRR4302535.2483786/94‑1 (MQ=60)
TGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTG < SRR4302535.632875/94‑1 (MQ=60)
TGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTG < SRR4302535.3713860/94‑1 (MQ=60)
TGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTG < SRR4302535.736953/94‑1 (MQ=60)
ACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCC < SRR4302535.2998906/94‑1 (MQ=60)
cctggtttcccattATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCG < SRR4302535.3311168/80‑1 (MQ=60)
GCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCG > SRR4302535.4036312/1‑94 (MQ=60)
GGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTTATGTTCGTTGCCCGTCG > SRR4302535.2236725/1‑94 (MQ=60)
GTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGC > SRR4302535.1216115/1‑94 (MQ=60)
GTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGC > SRR4302535.129004/1‑94 (MQ=60)
TTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCT < SRR4302535.1814000/94‑1 (MQ=60)
TACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTTATGTTCGTTGCCCGTCGCTG < SRR4302535.1434676/94‑1 (MQ=60)
ACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGG < SRR4302535.1353894/94‑1 (MQ=60)
ACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGG < SRR4302535.4283654/94‑1 (MQ=60)
ACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGGCGCTGG > SRR4302535.933138/1‑94 (MQ=60)
CCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGC < SRR4302535.4355616/94‑1 (MQ=60)
CGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTcgac > SRR4302535.802000/1‑90 (MQ=60)
CGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTCCCCGTCGCTGGCG > SRR4302535.3027623/1‑94 (MQ=60)
GATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGC > SRR4302535.2560167/1‑94 (MQ=60)
ATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCT > SRR4302535.4220856/1‑94 (MQ=60)
ATCATAAATGGGGCGTCTGGAGTGGCTCGGAGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCT < SRR4302535.3437893/94‑1 (MQ=60)
ATCATAAATGGGGCGTATGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCT < SRR4302535.2987936/94‑1 (MQ=60)
ATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAC > SRR4302535.2238956/1‑94 (MQ=60)
ATAAAGGGGGGGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAC < SRR4302535.933151/94‑1 (MQ=60)
AAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCC > SRR4302535.3646246/1‑94 (MQ=60)
AATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCCCCACATTCAATCGTGTTGATGTTCGTTGGCCGTCGCTGGCGCTGACCGC > SRR4302535.563414/1‑94 (MQ=60)
ATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAACGCC > SRR4302535.1970552/1‑94 (MQ=60)
TGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGGCGCTGGCGgttgaccgca > SRR4302535.2594113/1‑84 (MQ=60)
TGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTATTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCA < SRR4302535.4259174/94‑1 (MQ=60)
GGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGGTGGCGCTGACCGCCAA > SRR4302535.956045/1‑94 (MQ=60)
GGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAAC < SRR4302535.4063392/94‑1 (MQ=60)
GGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGGCAACA > SRR4302535.957227/1‑94 (MQ=60)
GGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACA < SRR4302535.2141258/94‑1 (MQ=60)
GCGTCTGGAGTGGCTCGGCGAATCTGAGTGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAG < SRR4302535.547883/94‑1 (MQ=60)
CGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGC > SRR4302535.3352862/1‑94 (MQ=60)
CGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGC > SRR4302535.2585638/1‑94 (MQ=60)
GTCTGGAGTGGCTCGGCGAATTTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCA > SRR4302535.2784904/1‑94 (MQ=60)
GTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCA < SRR4302535.1687486/94‑1 (MQ=60)
CTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGC < SRR4302535.4269354/94‑1 (MQ=60)
CTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGAACGCCAACAGCAGC > SRR4302535.4409266/1‑94 (MQ=60)
TGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCA > SRR4302535.2094233/1‑94 (MQ=60)
GGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGTCGCTGACCGCCAACAGCAGCAC < SRR4302535.976359/94‑1 (MQ=60)
GAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACG < SRR4302535.1033216/94‑1 (MQ=60)
TGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTG < SRR4302535.4634203/94‑1 (MQ=60)
GCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGAGGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGGGAA > SRR4302535.3062861/1‑94 (MQ=60)
TAGGCGAATCTGAATGCCACCNCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATA < SRR4302535.2270708/94‑1 (MQ=60)
cggtcaatttgaacGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCTTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATAT < SRR4302535.961225/80‑1 (MQ=60)
GGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATC < SRR4302535.2105506/94‑1 (MQ=60)
GCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCA < SRR4302535.3950184/94‑1 (MQ=60)
GCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCA < SRR4302535.2855669/94‑1 (MQ=60)
GCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCA < SRR4302535.48993/94‑1 (MQ=60)
GCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCA < SRR4302535.4415077/94‑1 (MQ=60)
GCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCA < SRR4302535.1803804/94‑1 (MQ=60)
CGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAG > SRR4302535.3231148/1‑94 (MQ=60)
GAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGC > SRR4302535.2374022/1‑94 (MQ=60)
GAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGC < SRR4302535.1342863/94‑1 (MQ=60)
GAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGC > SRR4302535.2095454/1‑94 (MQ=60)
GAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGC < SRR4302535.368317/94‑1 (MQ=60)
AATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCG > SRR4302535.2966918/1‑94 (MQ=60)
AATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCG < SRR4302535.1039083/94‑1 (MQ=60)
AATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCG < SRR4302535.1047918/94‑1 (MQ=60)
ATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGA > SRR4302535.859029/1‑94 (MQ=60)
TCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAA < SRR4302535.4361482/94‑1 (MQ=60)
CTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAAT > SRR4302535.1562513/1‑94 (MQ=60)
CTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAAC < SRR4302535.4165666/94‑1 (MQ=60)
CTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAAC < SRR4302535.4211358/94‑1 (MQ=60)
CTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAAC < SRR4302535.4265754/94‑1 (MQ=60)
CTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAAC < SRR4302535.3031174/94‑1 (MQ=60)
CTCAATCCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAAC < SRR4302535.2557909/94‑1 (MQ=60)
TGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACT < SRR4302535.654197/94‑1 (MQ=60)
TGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACT < SRR4302535.99577/94‑1 (MQ=60)
TGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACT > SRR4302535.1205675/1‑94 (MQ=60)
GAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTG < SRR4302535.950892/94‑1 (MQ=60)
GAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTG < SRR4302535.2351204/94‑1 (MQ=60)
TGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGT < SRR4302535.2988637/94‑1 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACTGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTG < SRR4302535.1858089/94‑1 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTG > SRR4302535.1280821/1‑94 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTG < SRR4302535.463109/94‑1 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTG < SRR4302535.1867042/94‑1 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTG < SRR4302535.889289/94‑1 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTG < SRR4302535.2958934/94‑1 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTG < SRR4302535.2948235/94‑1 (MQ=60)
GCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGCGAATATCAGCGAACTGAGTG < SRR4302535.4550616/94‑1 (MQ=60)
CCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGC < SRR4302535.2439370/94‑1 (MQ=60)
CGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCA < SRR4302535.2502940/94‑1 (MQ=60)
CGCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCA < SRR4302535.4092413/94‑1 (MQ=60)
GCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCAT < SRR4302535.1102217/94‑1 (MQ=60)
GCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCAT > SRR4302535.2362311/1‑94 (MQ=60)
GCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCAT > SRR4302535.4591115/1‑94 (MQ=60)
CCCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCAT < SRR4302535.3361074/94‑1 (MQ=60)
CCGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATT > SRR4302535.3776955/1‑94 (MQ=60)
CGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTT < SRR4302535.2998796/94‑1 (MQ=60)
CGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTT < SRR4302535.3977575/94‑1 (MQ=60)
CGCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTT > SRR4302535.69976/1‑94 (MQ=60)
GCCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTA > SRR4302535.1155336/1‑94 (MQ=60)
CCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTAC < SRR4302535.3406549/94‑1 (MQ=60)
CCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTAC < SRR4302535.2200937/94‑1 (MQ=60)
CCGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTAC < SRR4302535.4564796/94‑1 (MQ=60)
CGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACT > SRR4302535.4183529/1‑94 (MQ=60)
CGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACT > SRR4302535.3047390/1‑94 (MQ=60)
CGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACT < SRR4302535.2714626/94‑1 (MQ=60)
CGCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACT > SRR4302535.3970560/1‑94 (MQ=60)
CGCGACAGTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACT < SRR4302535.378695/94‑1 (MQ=60)
GCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTG < SRR4302535.3767279/94‑1 (MQ=60)
GCGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTG > SRR4302535.765970/1‑94 (MQ=60)
CGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACTGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGA > SRR4302535.3065188/1‑94 (MQ=60)
CGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGA > SRR4302535.2741795/1‑94 (MQ=60)
CGACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGA < SRR4302535.793560/94‑1 (MQ=60)
GACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAA < SRR4302535.3033504/94‑1 (MQ=60)
GACATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAA > SRR4302535.3063584/1‑94 (MQ=60)
CATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAA > SRR4302535.3767952/1‑94 (MQ=60)
CATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAA > SRR4302535.1306181/1‑94 (MQ=60)
CATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAA > SRR4302535.3071531/1‑94 (MQ=60)
ATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAA > SRR4302535.2338536/1‑94 (MQ=60)
ATTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAA < SRR4302535.1641829/94‑1 (MQ=60)
TTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAG < SRR4302535.2079990/94‑1 (MQ=60)
TTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAG < SRR4302535.2961079/94‑1 (MQ=60)
TTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAG < SRR4302535.3021081/94‑1 (MQ=60)
TTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAG < SRR4302535.856882/94‑1 (MQ=60)
TTCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAG < SRR4302535.2516969/94‑1 (MQ=60)
TCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGCACTGAGTGCATTTACTGAAAAAGG < SRR4302535.405402/94‑1 (MQ=60)
TCAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGG < SRR4302535.1165568/94‑1 (MQ=60)
TCAATCGTGTTGATGTTCGTTGCCCGTCGCTAGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGG < SRR4302535.2542723/94‑1 (MQ=60)
TCAAGCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGG < SRR4302535.4355003/94‑1 (MQ=60)
CAATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGC > SRR4302535.2701122/1‑94 (MQ=60)
AATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCA > SRR4302535.1562866/1‑94 (MQ=60)
AATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCA < SRR4302535.2449417/94‑1 (MQ=60)
ATCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCAT > SRR4302535.3927443/1‑94 (MQ=60)
TCGTGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATT < SRR4302535.3377328/94‑1 (MQ=60)
TGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTG > SRR4302535.4411738/1‑94 (MQ=60)
TGTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTG < SRR4302535.1271602/94‑1 (MQ=60)
GTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGG > SRR4302535.1810303/1‑94 (MQ=60)
GTTGATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGG > SRR4302535.1955512/1‑94 (MQ=60)
TATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAG < SRR4302535.1292313/94‑1 (MQ=60)
ATGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGC > SRR4302535.897692/1‑94 (MQ=60)
TGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCC < SRR4302535.1684650/94‑1 (MQ=60)
TGTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTAGAAGCC > SRR4302535.168159/1‑94 (MQ=60)
GTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCA > SRR4302535.1086802/1‑94 (MQ=60)
GTTCGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCA < SRR4302535.1079401/94‑1 (MQ=60)
CGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCG < SRR4302535.700790/94‑1 (MQ=60)
CGTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCG > SRR4302535.936146/1‑94 (MQ=60)
GTTGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGCAGCAACCGC > SRR4302535.830640/1‑94 (MQ=60)
TGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCA > SRR4302535.1688469/1‑94 (MQ=60)
|
CTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCA > NC_000913/3829326‑3829512
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
