Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,845,193 |
G→A |
T354T (ACC→ACT) |
uhpC ← |
UhpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,845,193 | 0 | G | A | 100.0%
| 753.4
/ NA
| 208 | T354T (ACC→ACT) | uhpC | UhpC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (124/84); total (124/84) |
Only 100 of 212 total aligned reads displayed.
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT > NC_000913/3845103‑3845282
|
ccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATCCCGATTAACATCTGTGGCCCAAAGACAAAAAAACCAATAGTga < 1:1726978/93‑1 (MQ=255)
tccccgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTgaaga < 2:3950963/90‑1 (MQ=255)
tCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTgaaga < 1:457938/93‑1 (MQ=255)
cgccgcCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATAACGATTAACATCTGTGGGCCAAAGAGAAAAAAACTAATAGTgaagaa > 2:1346506/1‑93 (MQ=255)
gccgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGaagaag > 2:323636/1‑93 (MQ=255)
ccgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGc < 2:357694/93‑1 (MQ=255)
ccgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGc > 1:2169670/1‑93 (MQ=255)
cgccCGTGCCGCCTCGTGGTGGGAACACTCTTCGGCCGCCATACCGATCAACATCTGTGGGCCAAAGACAAAAAAACCAACAGTGAAAAAGCa < 2:1704251/93‑1 (MQ=255)
cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCa < 2:551083/93‑1 (MQ=255)
cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCa < 1:2789109/93‑1 (MQ=255)
gccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAg > 2:1024154/1‑93 (MQ=255)
cccccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAg < 2:823235/92‑1 (MQ=255)
cccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGt > 2:2200792/1‑93 (MQ=255)
ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGtt > 1:2002818/1‑93 (MQ=255)
ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGtt > 1:2990335/1‑93 (MQ=255)
ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGtt < 2:4031178/93‑1 (MQ=255)
ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGtt > 2:120117/1‑93 (MQ=255)
tGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGc > 2:3222765/1‑93 (MQ=255)
gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGcc < 1:4265164/93‑1 (MQ=255)
gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGcc < 2:4065398/93‑1 (MQ=255)
gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGcc > 1:888711/1‑93 (MQ=255)
gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGcc > 1:3290529/1‑93 (MQ=255)
ccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCa < 2:4507291/93‑1 (MQ=255)
ccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCa > 2:3012430/1‑93 (MQ=255)
tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc > 2:3443001/1‑93 (MQ=255)
tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc > 2:177908/1‑93 (MQ=255)
tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc > 1:4072972/1‑93 (MQ=255)
tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc > 2:486172/1‑93 (MQ=255)
tttGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAc > 2:691623/1‑93 (MQ=255)
tttGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAc > 1:3636794/1‑93 (MQ=255)
gAACACTCTGCCGCCGCGATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTg < 2:4429938/93‑1 (MQ=255)
gAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTg > 1:4061746/1‑93 (MQ=255)
acacTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGc > 1:495579/1‑93 (MQ=255)
acTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaa > 2:3967726/1‑93 (MQ=255)
ctctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaaa > 1:1648885/1‑93 (MQ=255)
cgtGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAt < 2:2154750/91‑1 (MQ=255)
ctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATg > 2:1898511/1‑93 (MQ=255)
tGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATgg > 2:29192/1‑93 (MQ=255)
gccgccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGc < 1:77306/93‑1 (MQ=255)
cgccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAt < 1:2769774/93‑1 (MQ=255)
cgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAg > 2:3364632/1‑93 (MQ=255)
cgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAg > 1:2112485/1‑93 (MQ=255)
gccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGc > 2:2257367/1‑93 (MQ=255)
ccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGcc > 1:3863399/1‑93 (MQ=255)
ccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGcc > 2:3193468/1‑93 (MQ=255)
ccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGcc > 2:4122431/1‑93 (MQ=255)
aTACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcac > 2:1952679/1‑93 (MQ=255)
aTACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcac < 2:3565441/93‑1 (MQ=255)
aTACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcac < 2:4460719/93‑1 (MQ=255)
tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcacg > 2:1516722/1‑92 (MQ=255)
tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca < 1:2441289/93‑1 (MQ=255)
aCCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAg < 1:283664/93‑1 (MQ=255)
ccGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg > 2:1214314/1‑93 (MQ=255)
cGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAggg < 1:831634/93‑1 (MQ=255)
ggttAACATCTGTGGGCCAAAGAAAAAAAAACCAATAGAGAAGAAGCAGGTAGCCTGCATCACGTAGCTGGCACATTGCATCCGCCACAgggt > 2:3719765/3‑92 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa > 1:838088/1‑93 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa < 1:2045939/93‑1 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa > 2:1508472/1‑93 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa > 1:3678292/1‑93 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa > 1:120917/1‑93 (MQ=255)
ttATCATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc > 2:2905874/1‑93 (MQ=255)
ttAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc < 1:1976821/93‑1 (MQ=255)
ttAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc < 2:59754/93‑1 (MQ=255)
tAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGcc < 1:53629/93‑1 (MQ=255)
aaCATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGCGAGCCg > 2:2588288/1‑93 (MQ=255)
aCATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGa > 1:1086958/1‑93 (MQ=255)
cATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAc > 1:631316/1‑93 (MQ=255)
cATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAc > 1:3632781/1‑93 (MQ=255)
tCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTg > 1:180786/1‑93 (MQ=255)
cTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGa > 2:2840039/1‑93 (MQ=255)
cTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGa < 1:4471320/93‑1 (MQ=255)
cAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaaa > 1:1040454/1‑93 (MQ=255)
cAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaaa < 1:2700890/93‑1 (MQ=255)
cAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaaa > 1:32156/1‑93 (MQ=255)
cAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaaa > 1:3608869/1‑93 (MQ=255)
cAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGACGACTGAAAGCaaat > 1:1385625/1‑92 (MQ=255)
aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt < 1:2064894/93‑1 (MQ=255)
aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt < 1:2483014/93‑1 (MQ=255)
aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt > 1:596385/1‑93 (MQ=255)
aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt > 2:419212/1‑93 (MQ=255)
aaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGACACAGGGAGACGACTGAAAGCacaagt > 2:110579/1‑91 (MQ=255)
aGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTc > 1:2880370/1‑93 (MQ=255)
gACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc > 2:3488001/1‑93 (MQ=255)
cAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcgg < 2:1082064/93‑1 (MQ=255)
aaaaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggc > 2:4478808/1‑93 (MQ=255)
aaaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcg > 1:147460/1‑93 (MQ=255)
aaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcgg > 1:1277475/1‑93 (MQ=255)
aaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcgg < 1:428706/93‑1 (MQ=255)
aaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGgcggcg < 1:3324083/93‑1 (MQ=255)
aaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGa > 2:2633280/1‑93 (MQ=255)
aaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGa > 2:4651303/1‑93 (MQ=255)
aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaa > 1:230333/1‑93 (MQ=255)
aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaa > 1:571884/1‑93 (MQ=255)
aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaa > 2:3820754/1‑93 (MQ=255)
ccAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaa > 2:4531665/1‑93 (MQ=255)
ccAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaa > 2:4234853/1‑93 (MQ=255)
ccAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaa > 1:3354222/1‑93 (MQ=255)
cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa > 1:2969958/1‑93 (MQ=255)
aaTAGTGAAGAAGCCGGTTGCCTGCCTCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAt < 2:156049/93‑1 (MQ=255)
aaTAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaaa > 2:3541295/1‑92 (MQ=255)
|
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT > NC_000913/3845103‑3845282
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > NC_000913/3845100‑3845286
|
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATA > SRR4302535.1930980/1‑94 (MQ=60)
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAAACAATA > SRR4302535.2620795/1‑94 (MQ=60)
ACCCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG < SRR4302535.901122/94‑1 (MQ=60)
AACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG > SRR4302535.451883/1‑94 (MQ=60)
ACCCCGCCGCCGCCCCTGCCGCCTTTTTGTGGGAACACTTTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGT < SRR4302535.572763/94‑1 (MQ=60)
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTG > SRR4302535.501224/1‑94 (MQ=60)
CCCCGCCGCCGCCCTGGCCGCCTCTTTGGGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTG < SRR4302535.2496391/94‑1 (MQ=60)
CCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGA > SRR4302535.4582254/1‑94 (MQ=60)
CCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATCCCGATTAACATCTGTGGCCCAAAGACAAAAAAACCAATAGTGAA < SRR4302535.1739463/94‑1 (MQ=60)
TCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAA < SRR4302535.461139/94‑1 (MQ=60)
GCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGC > SRR4302535.2185209/1‑94 (MQ=60)
CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG < SRR4302535.2808959/94‑1 (MQ=60)
CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT < SRR4302535.1388468/94‑1 (MQ=60)
CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT < SRR4302535.1986646/94‑1 (MQ=60)
CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT > SRR4302535.550505/1‑94 (MQ=60)
CCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTT > SRR4302535.2017250/1‑94 (MQ=60)
CCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTT > SRR4302535.3011304/1‑94 (MQ=60)
CCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTG < SRR4302535.1903115/94‑1 (MQ=60)
TGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCC > SRR4302535.3313407/1‑94 (MQ=60)
TGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCC > SRR4302535.895006/1‑94 (MQ=60)
GCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCT < SRR4302535.4294372/94‑1 (MQ=60)
CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC > SRR4302535.3657412/1‑94 (MQ=60)
CCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCAT < SRR4302535.2450742/94‑1 (MQ=60)
CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC > SRR4302535.4100843/1‑94 (MQ=60)
CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC > SRR4302535.59815/1‑94 (MQ=60)
CTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAC > SRR4302535.3661996/1‑94 (MQ=60)
TTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGT < SRR4302535.931791/94‑1 (MQ=60)
TGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGC < SRR4302535.4157708/94‑1 (MQ=60)
GGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCT < SRR4302535.3257223/94‑1 (MQ=60)
GGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTG > SRR4302535.4089548/1‑94 (MQ=60)
GGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTG < SRR4302535.1782186/94‑1 (MQ=60)
GAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGG < SRR4302535.2834894/94‑1 (MQ=60)
AACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGC > SRR4302535.499060/1‑94 (MQ=60)
ACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAA > SRR4302535.1660813/1‑94 (MQ=60)
TCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATG > SRR4302535.2998786/1‑94 (MQ=60)
CTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGG < SRR4302535.3659580/94‑1 (MQ=60)
TGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGC > SRR4302535.4311016/1‑94 (MQ=60)
GCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCA < SRR4302535.77860/94‑1 (MQ=60)
CCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAT < SRR4302535.834908/94‑1 (MQ=60)
CCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAT > SRR4302535.2798088/1‑94 (MQ=60)
CGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATC < SRR4302535.2789495/94‑1 (MQ=60)
CCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAG > SRR4302535.2127732/1‑94 (MQ=60)
CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC > SRR4302535.2477677/1‑94 (MQ=60)
GCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCC > SRR4302535.3889978/1‑94 (MQ=60)
GCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCC > SRR4302535.2732323/1‑94 (MQ=60)
CCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCACATGGCATCACCCA > SRR4302535.4011358/1‑94 (MQ=60)
ATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACA > SRR4302535.2063445/1‑94 (MQ=60)
TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG < SRR4302535.2458876/94‑1 (MQ=60)
ACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGG < SRR4302535.285641/94‑1 (MQ=60)
CCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGG < SRR4302535.841086/94‑1 (MQ=60)
ACGATTAACATCTGTGTGCCAAAGCCAAAAAAACCAATAGGGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAGCAGCCACAGGG < SRR4302535.2989438/94‑1 (MQ=60)
CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA < SRR4302535.837462/94‑1 (MQ=60)
CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA > SRR4302535.481301/1‑94 (MQ=60)
CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA > SRR4302535.843972/1‑94 (MQ=60)
CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA > SRR4302535.3703751/1‑94 (MQ=60)
CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA > SRR4302535.1073377/1‑94 (MQ=60)
CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA > SRR4302535.121764/1‑94 (MQ=60)
GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG > SRR4302535.750876/1‑94 (MQ=60)
GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG < SRR4302535.2060675/94‑1 (MQ=60)
GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG < SRR4302535.3678955/94‑1 (MQ=60)
TTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCC < SRR4302535.1991058/94‑1 (MQ=60)
TAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCG > SRR4302535.3229605/1‑94 (MQ=60)
TAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCG > SRR4302535.1122908/1‑94 (MQ=60)
TAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCG < SRR4302535.54023/94‑1 (MQ=60)
AACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGA > SRR4302535.1094685/1‑94 (MQ=60)
ACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAC > SRR4302535.635719/1‑94 (MQ=60)
ACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAC > SRR4302535.3657957/1‑94 (MQ=60)
ATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGTATCACGTAGCTGGCAAATGGTATCAGCCACAGGGAGCCGACTG < SRR4302535.3323667/94‑1 (MQ=60)
ATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTG > SRR4302535.182042/1‑94 (MQ=60)
CTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAA > SRR4302535.1996864/1‑94 (MQ=60)
CTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAA > SRR4302535.2511243/1‑94 (MQ=60)
CTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAA < SRR4302535.4502003/94‑1 (MQ=60)
GTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAG < SRR4302535.54250/94‑1 (MQ=60)
TGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGC < SRR4302535.4381767/94‑1 (MQ=60)
TGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGC < SRR4302535.4029008/94‑1 (MQ=60)
CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA > SRR4302535.2023366/1‑94 (MQ=60)
CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA > SRR4302535.1047834/1‑94 (MQ=60)
CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA > SRR4302535.32403/1‑94 (MQ=60)
CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA > SRR4302535.3633897/1‑94 (MQ=60)
CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGACGACTGAAAGCAAAT > SRR4302535.1395514/1‑94 (MQ=60)
CAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAT > SRR4302535.608728/1‑94 (MQ=60)
CAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAT > SRR4302535.858008/1‑94 (MQ=60)
CAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAT > SRR4302535.600564/1‑94 (MQ=60)
CAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAT < SRR4302535.1508707/94‑1 (MQ=60)
CAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAT < SRR4302535.2720187/94‑1 (MQ=60)
AAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATT < SRR4302535.2079780/94‑1 (MQ=60)
AAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATT < SRR4302535.2500917/94‑1 (MQ=60)
AAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTC > SRR4302535.2900761/1‑94 (MQ=60)
AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC > SRR4302535.2177805/1‑94 (MQ=60)
AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC > SRR4302535.2116949/1‑94 (MQ=60)
AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC < SRR4302535.1669980/94‑1 (MQ=60)
GACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCG < SRR4302535.3372312/94‑1 (MQ=60)
GACAAAAAAACCAATAGAGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCG < SRR4302535.1219541/94‑1 (MQ=60)
ACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGG > SRR4302535.3728766/1‑94 (MQ=60)
AAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCG < SRR4302535.3442775/94‑1 (MQ=60)
AAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCG > SRR4302535.148492/1‑94 (MQ=60)
AAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGG > SRR4302535.1432882/1‑94 (MQ=60)
AAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGG > SRR4302535.1286599/1‑94 (MQ=60)
AAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGC > SRR4302535.3032931/1‑94 (MQ=60)
AAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGC < SRR4302535.431687/94‑1 (MQ=60)
AAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGA < SRR4302535.3347208/94‑1 (MQ=60)
AACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAA > SRR4302535.575899/1‑94 (MQ=60)
AACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAA > SRR4302535.231921/1‑94 (MQ=60)
ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAA > SRR4302535.3377578/1‑94 (MQ=60)
CCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAA > SRR4302535.2872385/1‑94 (MQ=60)
CCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAA > SRR4302535.219253/1‑94 (MQ=60)
CCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAA > SRR4302535.2990805/1‑94 (MQ=60)
CAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT > SRR4302535.4091662/1‑94 (MQ=60)
ATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCA > SRR4302535.4378585/1‑94 (MQ=60)
AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATTAAA > SRR4302535.1221828/1‑94 (MQ=60)
AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > SRR4302535.4368222/1‑94 (MQ=60)
AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > SRR4302535.2186898/1‑94 (MQ=60)
AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > SRR4302535.314487/1‑94 (MQ=60)
|
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > NC_000913/3845100‑3845286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
