Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,851,411	A→G	intergenic (‑796/‑132)	ivbL ← / → emrD	ilvB operon leader peptide/2‑module integral membrane pump

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,851,411	0	A	G	100.0%	768.6 / NA	238	intergenic (‑796/‑132)	ivbL/emrD	ilvB operon leader peptide/2‑module integral membrane pump
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (88/150); total (88/150)

Only 100 of 240 total aligned reads displayed.

TTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG  >  NC_000913/3851321‑3851500

  tAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCCTCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCata                                                                                       <  2:2345779/93‑1 (MQ=255)

  tAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCata                                                                                       <  1:1391004/93‑1 (MQ=255)

   aGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCatat                                                                                      <  1:3957387/93‑1 (MQ=255)

   aGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCatat                                                                                      <  2:1682557/93‑1 (MQ=255)

    gCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATAtt                                                                                     >  1:2579600/1‑93 (MQ=255)

     cGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTc                                                                                    <  1:681732/93‑1 (MQ=255)

      gTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCt                                                                                   <  2:1321485/93‑1 (MQ=255)

      gTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTAGCATATTCt                                                                                   >  2:3763109/1‑93 (MQ=255)

       tGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTg                                                                                  >  2:2138464/1‑93 (MQ=255)

       tGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTg                                                                                  >  2:152901/1‑93 (MQ=255)

       tGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTg                                                                                  >  1:2094850/1‑93 (MQ=255)

          gggTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCg                                                                               >  1:2449983/1‑93 (MQ=255)

              tGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTaa                                                                           <  2:2771709/93‑1 (MQ=255)

              tGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTaa                                                                           <  1:4646977/93‑1 (MQ=255)

               ggTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTaaa                                                                          <  1:2866219/93‑1 (MQ=255)

               ggTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTaaa                                                                          <  2:2158698/93‑1 (MQ=255)

                gtgtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAc                                                                         <  1:4233620/93‑1 (MQ=255)

                  gtgggATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACaa                                                                       <  2:4084354/90‑1 (MQ=255)

                  gtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACaa                                                                       <  1:2930204/93‑1 (MQ=255)

                  gtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTCTTTGCATATTCTGCCGCTAAACaa                                                                       <  2:4518818/93‑1 (MQ=255)

                   tCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAt                                                                      <  2:3601692/93‑1 (MQ=255)

                   tCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAt                                                                      >  1:557575/1‑93 (MQ=255)

                    cGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAtt                                                                     <  1:722015/93‑1 (MQ=255)

                    cGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAtt                                                                     <  1:1109625/93‑1 (MQ=255)

                       atgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTccc                                                                  <  2:1282128/93‑1 (MQ=255)

                       atgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTccc                                                                  >  1:353058/1‑93 (MQ=255)

                          cgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAt                                                               <  2:1117761/93‑1 (MQ=255)

                          cgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAt                                                               <  2:2626145/93‑1 (MQ=255)

                          cgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAt                                                               <  2:792168/93‑1 (MQ=255)

                           gatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAtt                                                              >  2:710051/1‑93 (MQ=255)

                            atgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTc                                                             >  1:318024/1‑93 (MQ=255)

                             tgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTcc                                                            <  1:2367324/93‑1 (MQ=255)

                              gcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCt                                                           <  2:3358401/93‑1 (MQ=255)

                              gcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCt                                                           <  1:4339679/93‑1 (MQ=255)

                               cTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTg                                                          <  1:1252858/93‑1 (MQ=255)

                               cTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTg                                                          >  2:2780013/1‑93 (MQ=255)

                                tGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTgg                                                         <  1:3239829/93‑1 (MQ=255)

                                 gACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGc                                                        >  1:970293/1‑93 (MQ=255)

                                    gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGta                                                     <  2:320792/93‑1 (MQ=255)

                                    gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGta                                                     <  1:3898557/93‑1 (MQ=255)

                                    gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGta                                                     <  2:3189889/93‑1 (MQ=255)

                                      aTCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGtata                                                   >  1:4450814/1‑93 (MQ=255)

                                      aTCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGtata                                                   >  1:2203958/1‑93 (MQ=255)

                                       tCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTatat                                                  >  1:2853933/1‑93 (MQ=255)

                                       tCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTatat                                                  >  2:3406269/1‑93 (MQ=255)

                                        cTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATc                                                 <  2:4650260/93‑1 (MQ=255)

                                        cTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATc                                                 <  2:5161/93‑1 (MQ=255)

                                          tATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTg                                               <  2:114733/93‑1 (MQ=255)

                                           aTCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTgg                                              <  2:690839/93‑1 (MQ=255)

                                            tCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGc                                             <  2:4275189/93‑1 (MQ=255)

                                                 ccTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACa                                        >  1:2036988/1‑93 (MQ=255)

                                                 ccTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACa                                        <  2:1946642/93‑1 (MQ=255)

                                                 ccTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACa                                        >  2:2826391/1‑93 (MQ=255)

                                                 ccTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACa                                        <  1:3372746/93‑1 (MQ=255)

                                                 ccTACCATCTCTCACGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACa                                        <  1:2678058/93‑1 (MQ=255)

                                                  cTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAt                                       <  1:3409777/93‑1 (MQ=255)

                                                   tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTTCCCATTCCTGGCGTATATCTTGCTTACAtt                                      >  2:4375933/1‑93 (MQ=255)

                                                   tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTTGCTAACAtt                                      >  1:1569474/1‑93 (MQ=255)

                                                   tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAtt                                      <  1:3230172/93‑1 (MQ=255)

                                                   tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAtt                                      <  1:3532679/93‑1 (MQ=255)

                                                       aTCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatc                                  >  1:1908710/1‑93 (MQ=255)

                                                       aTCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatc                                  >  1:516927/1‑93 (MQ=255)

                                                       aTCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatc                                  >  1:4312903/1‑93 (MQ=255)

                                                        tctctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatca                                 >  1:3754307/1‑93 (MQ=255)

                                                        tctctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatca                                 >  1:360353/1‑93 (MQ=255)

                                                          tctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAt                               >  2:188854/1‑93 (MQ=255)

                                                          tctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAt                               <  1:3567388/93‑1 (MQ=255)

                                                           ctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCTTCAAtg                              <  2:3903317/93‑1 (MQ=255)

                                                              ccGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGa                           <  1:3866370/93‑1 (MQ=255)

                                                               cGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAt                          <  2:3270722/93‑1 (MQ=255)

                                                                ggCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATa                         <  2:942481/93‑1 (MQ=255)

                                                                ggCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATa                         <  1:4053303/93‑1 (MQ=255)

                                                                ggCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATa                         <  1:491849/93‑1 (MQ=255)

                                                                  cAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGa                       <  2:2406415/93‑1 (MQ=255)

                                                                  cAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGa                       <  2:25126/93‑1 (MQ=255)

                                                                  cAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGa                       <  1:208068/93‑1 (MQ=255)

                                                                  cAAAATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGa                       <  1:2533905/93‑1 (MQ=255)

                                                                   aaCATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAt                      <  1:1709342/93‑1 (MQ=255)

                                                                   aaCATTTATTACCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATAGCTGGCTAACATTCATCAATGTGATAGAt                      >  2:1204020/1‑93 (MQ=255)

                                                                    aCATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAtt                     >  1:1466386/1‑93 (MQ=255)

                                                                     cATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTc                    <  2:1697285/93‑1 (MQ=255)

                                                                        ttATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCctc                 <  2:3067533/93‑1 (MQ=255)

                                                                        ttATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCctc                 <  1:866157/93‑1 (MQ=255)

                                                                         tATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCctct                >  2:1017438/1‑93 (MQ=255)

                                                                           ttGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATGCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTcc              <  1:1778550/93‑1 (MQ=255)

                                                                              ccGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGc           <  1:832806/93‑1 (MQ=255)

                                                                              ccGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGc           <  2:660826/93‑1 (MQ=255)

                                                                              ccGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGc           >  2:19108/1‑93 (MQ=255)

                                                                               cGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCa          <  2:1601602/93‑1 (MQ=255)

                                                                                gCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCAt         <  1:2294576/93‑1 (MQ=255)

                                                                                 cTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCAtt        >  1:3054814/1‑93 (MQ=255)

                                                                                     tGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATg    <  2:2224425/93‑1 (MQ=255)

                                                                                     tGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATg    >  2:4107334/1‑93 (MQ=255)

                                                                                     tGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATg    <  1:4034370/93‑1 (MQ=255)

                                                                                     tGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATg    <  1:813917/93‑1 (MQ=255)

                                                                                     tGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATg    <  2:1387582/93‑1 (MQ=255)

                                                                                       tttGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATggg  <  1:2828409/93‑1 (MQ=255)

                                                                                       tttGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATggg  >  1:3265817/1‑93 (MQ=255)

                                                                                       tttGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATggg  >  2:2233388/1‑93 (MQ=255)

                                                                                       tttGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATggg  <  1:1001704/93‑1 (MQ=255)

TTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG  >  NC_000913/3851321‑3851500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT  >  NC_000913/3851318‑3851503

ATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTG                                                                                              <  SRR4302535.651369/94‑1 (MQ=60)

 TATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGC                                                                                             <  SRR4302535.1987658/94‑1 (MQ=60)

  ATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCA                                                                                            >  SRR4302535.2545269/1‑94 (MQ=60)

  ATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCA                                                                                            <  SRR4302535.3665330/94‑1 (MQ=60)

   TTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCAT                                                                                           <  SRR4302535.4174503/94‑1 (MQ=60)

    TTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATA                                                                                          <  SRR4302535.265911/94‑1 (MQ=60)

    TTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATA                                                                                          <  SRR4302535.4162225/94‑1 (MQ=60)

     tacaGTGCGGGCTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCTCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATAT                                                                                         <  SRR4302535.1328738/90‑1 (MQ=60)

     TAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATAT                                                                                         <  SRR4302535.1400933/94‑1 (MQ=60)

     TAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATAT                                                                                         <  SRR4302535.3605855/94‑1 (MQ=60)

      AGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATT                                                                                        >  SRR4302535.2598134/1‑94 (MQ=60)

      AGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATT                                                                                        <  SRR4302535.3984405/94‑1 (MQ=60)

        CGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCT                                                                                      <  SRR4302535.686505/94‑1 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                     >  SRR4302535.3465279/1‑94 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                     <  SRR4302535.2172171/94‑1 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                     >  SRR4302535.2109956/1‑94 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                     >  SRR4302535.4051946/1‑94 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                     <  SRR4302535.499085/94‑1 (MQ=60)

           GCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCC                                                                                   <  SRR4302535.3937041/94‑1 (MQ=60)

            CGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCG                                                                                  >  SRR4302535.2467638/1‑94 (MQ=60)

              GGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCT                                                                                <  SRR4302535.2387838/94‑1 (MQ=60)

                GTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAA                                                                              <  SRR4302535.2692253/94‑1 (MQ=60)

                 TGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCTGCTAAA                                                                             >  SRR4302535.2717202/1‑94 (MQ=60)

                 TGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAA                                                                             <  SRR4302535.4678459/94‑1 (MQ=60)

                  GGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAC                                                                            <  SRR4302535.3028116/94‑1 (MQ=60)

                  GGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAC                                                                            <  SRR4302535.2886521/94‑1 (MQ=60)

                   GTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACA                                                                           <  SRR4302535.3678705/94‑1 (MQ=60)

                   GTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACA                                                                           <  SRR4302535.4262592/94‑1 (MQ=60)

                     GTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAT                                                                         >  SRR4302535.561480/1‑94 (MQ=60)

                     GTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAT                                                                         <  SRR4302535.2950844/94‑1 (MQ=60)

                     GTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAT                                                                         <  SRR4302535.3907744/94‑1 (MQ=60)

                      TCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATT                                                                        <  SRR4302535.3348065/94‑1 (MQ=60)

                      TCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATT                                                                        <  SRR4302535.2241525/94‑1 (MQ=60)

                       CGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTC                                                                       <  SRR4302535.167575/94‑1 (MQ=60)

                       CGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTC                                                                       <  SRR4302535.1117551/94‑1 (MQ=60)

                       CGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTC                                                                       <  SRR4302535.727083/94‑1 (MQ=60)

                        GGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCC                                                                      <  SRR4302535.840925/94‑1 (MQ=60)

                         GATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCC                                                                     >  SRR4302535.355494/1‑94 (MQ=60)

                          ATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCC                                                                    <  SRR4302535.2595423/94‑1 (MQ=60)

                           TGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCA                                                                   >  SRR4302535.712284/1‑94 (MQ=60)

                            TCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAT                                                                  <  SRR4302535.2365684/94‑1 (MQ=60)

                             CGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATT                                                                 <  SRR4302535.3054899/94‑1 (MQ=60)

                             CGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATT                                                                 <  SRR4302535.4543785/94‑1 (MQ=60)

                              GATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTC                                                                >  SRR4302535.320229/1‑94 (MQ=60)

                                TGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCT                                                              <  SRR4302535.2384321/94‑1 (MQ=60)

                                 GCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTG                                                             <  SRR4302535.4369360/94‑1 (MQ=60)

                                  CTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGG                                                            <  SRR4302535.1261815/94‑1 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                           >  SRR4302535.2107910/1‑94 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                           <  SRR4302535.3792247/94‑1 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                           <  SRR4302535.3262325/94‑1 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                           >  SRR4302535.977180/1‑94 (MQ=60)

                                      CGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTA                                                        >  SRR4302535.93245/1‑94 (MQ=60)

                                       GCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTAT                                                       <  SRR4302535.3925264/94‑1 (MQ=60)

                                        CATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATA                                                      >  SRR4302535.2219660/1‑94 (MQ=60)

                                        CATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATA                                                      >  SRR4302535.4481338/1‑94 (MQ=60)

                                         ATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATAT                                                     >  SRR4302535.2874149/1‑94 (MQ=60)

                                         ATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATAT                                                     >  SRR4302535.3212440/1‑94 (MQ=60)

                                           CTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCT                                                   <  SRR4302535.3255656/94‑1 (MQ=60)

                                           CTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCT                                                   >  SRR4302535.3995258/1‑94 (MQ=60)

                                            TTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTG                                                  <  SRR4302535.4074162/94‑1 (MQ=60)

                                               TCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCT                                               <  SRR4302535.1513229/94‑1 (MQ=60)

                                               TCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCT                                               <  SRR4302535.4320800/94‑1 (MQ=60)

                                               TCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCT                                               >  SRR4302535.3611604/1‑94 (MQ=60)

                                                   CCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACA                                           >  SRR4302535.4361379/1‑94 (MQ=60)

                                                   CCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACA                                           <  SRR4302535.757102/94‑1 (MQ=60)

                                                   CCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACA                                           >  SRR4302535.2051656/1‑94 (MQ=60)

                                                    CCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTATACCATTGCCCATTCCTGGCGTATGTCTGGCTAACAT                                          >  SRR4302535.2073913/1‑94 (MQ=60)

                                                    CCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAT                                          <  SRR4302535.605919/94‑1 (MQ=60)

                                                    CCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAT                                          >  SRR4302535.2851948/1‑94 (MQ=60)

                                                    CCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAT                                          >  SRR4302535.3476032/1‑94 (MQ=60)

                                                    CCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAT                                          <  SRR4302535.3396208/94‑1 (MQ=60)

                                                    CCTACCATCTCTCACGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAT                                          <  SRR4302535.2697218/94‑1 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTTGCTAACATT                                         >  SRR4302535.1580801/1‑94 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                         <  SRR4302535.3433504/94‑1 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                         <  SRR4302535.3401855/94‑1 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                         >  SRR4302535.2253278/1‑94 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                         >  SRR4302535.3556981/1‑94 (MQ=60)

                                                      TACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTC                                        >  SRR4302535.121207/1‑94 (MQ=60)

                                                      TACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTC                                        <  SRR4302535.3557206/94‑1 (MQ=60)

                                                      TACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTC                                        <  SRR4302535.3252565/94‑1 (MQ=60)

                                                       acctgCTCTCCCGGCAACATTTATTGCCGCTTCTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCA                                       <  SRR4302535.2131128/89‑1 (MQ=60)

                                                        CCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCAT                                      <  SRR4302535.1790942/94‑1 (MQ=60)

                                                         CATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATC                                     <  SRR4302535.475230/94‑1 (MQ=60)

                                                         CATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATC                                     >  SRR4302535.520544/1‑94 (MQ=60)

                                                         CATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATC                                     >  SRR4302535.4342404/1‑94 (MQ=60)

                                                         CATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATC                                     >  SRR4302535.1922470/1‑94 (MQ=60)

                                                          ATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCA                                    >  SRR4302535.2424044/1‑94 (MQ=60)

                                                          ATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCA                                    >  SRR4302535.362845/1‑94 (MQ=60)

                                                          ATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCA                                    >  SRR4302535.3780280/1‑94 (MQ=60)

                                                            CTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAT                                  <  SRR4302535.3287364/94‑1 (MQ=60)

                                                             TCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATG                                 <  SRR4302535.4416111/94‑1 (MQ=60)

                                                             TCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATG                                 <  SRR4302535.3592122/94‑1 (MQ=60)

                                                             TCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATG                                 >  SRR4302535.2862313/1‑94 (MQ=60)

                                                               TCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTG                               <  SRR4302535.3793599/94‑1 (MQ=60)

                                                               TCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTG                               <  SRR4302535.3141111/94‑1 (MQ=60)

                                                                 CCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAT                             <  SRR4302535.3340734/94‑1 (MQ=60)

                                                                 CCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAT                             <  SRR4302535.3892957/94‑1 (MQ=60)

                                                                 CCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAT                             <  SRR4302535.1448211/94‑1 (MQ=60)

                                                                  CGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATA                            <  SRR4302535.970274/94‑1 (MQ=60)

                                                                  CGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATA                            <  SRR4302535.1537039/94‑1 (MQ=60)

                                                                   GGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAG                           <  SRR4302535.4081058/94‑1 (MQ=60)

                                                                   GGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAG                           >  SRR4302535.562755/1‑94 (MQ=60)

                                                                   GGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAG                           <  SRR4302535.495297/94‑1 (MQ=60)

                                                                    GCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGA                          >  SRR4302535.2884370/1‑94 (MQ=60)

                                                                     CAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAT                         <  SRR4302535.209497/94‑1 (MQ=60)

                                                                     CAAAATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAT                         <  SRR4302535.2552155/94‑1 (MQ=60)

                                                                      AACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATT                        <  SRR4302535.1721701/94‑1 (MQ=60)

                                                                      AACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATT                        >  SRR4302535.1476892/1‑94 (MQ=60)

                                                                      AACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATT                        <  SRR4302535.4699855/94‑1 (MQ=60)

                                                                      AACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATT                        <  SRR4302535.827920/94‑1 (MQ=60)

                                                                         ATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCT                     <  SRR4302535.3246744/94‑1 (MQ=60)

                                                                          TTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTC                    >  SRR4302535.4401645/1‑94 (MQ=60)

                                                                          TTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTC                    >  SRR4302535.1958038/1‑94 (MQ=60)

                                                                           TTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCT                   >  SRR4302535.538331/1‑94 (MQ=60)

                                                                           TTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCT                   <  SRR4302535.872280/94‑1 (MQ=60)

                                                                              TTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATGCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCC                <  SRR4302535.1791428/94‑1 (MQ=60)

                                                                               TGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCG               >  SRR4302535.806549/1‑94 (MQ=60)

                                                                                GCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGC              >  SRR4302535.2056310/1‑94 (MQ=60)

                                                                                 CCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCA             >  SRR4302535.2936634/1‑94 (MQ=60)

                                                                                 CCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCA             <  SRR4302535.838643/94‑1 (MQ=60)

                                                                                   GCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATT           >  SRR4302535.3076197/1‑94 (MQ=60)

                                                                                   GCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATT           <  SRR4302535.2310985/94‑1 (MQ=60)

                                                                                   GCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATT           <  SRR4302535.13486/94‑1 (MQ=60)

                                                                                   CCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATT           <  SRR4302535.1043952/94‑1 (MQ=60)

                                                                                     TTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTA         >  SRR4302535.1873902/1‑94 (MQ=60)

                                                                                        TGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGG      <  SRR4302535.819627/94‑1 (MQ=60)

                                                                                        TGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGG      <  SRR4302535.4061990/94‑1 (MQ=60)

                                                                                         GTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG     >  SRR4302535.1883551/1‑94 (MQ=60)

                                                                                         GTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG     >  SRR4302535.3288504/1‑94 (MQ=60)

                                                                                         GTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG     >  SRR4302535.358654/1‑94 (MQ=60)

                                                                                          TTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGA    <  SRR4302535.2848482/94‑1 (MQ=60)

                                                                                          TTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGA    <  SRR4302535.1008822/94‑1 (MQ=60)

                                                                                            TGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT  <  SRR4302535.3470490/94‑1 (MQ=60)

                                                                                            TGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT  >  SRR4302535.3641841/1‑94 (MQ=60)

                                                                                            TGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT  <  SRR4302535.3669580/94‑1 (MQ=60)

ATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT  >  NC_000913/3851318‑3851503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`