Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,853,574	T→C	R8R (AGA→AGG)	yidG ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,853,574	0	T	C	100.0%	649.5 / NA	207	R8R (AGA→AGG)	yidG	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (76/131); total (76/131)

Only 100 of 217 total aligned reads displayed.

AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGT  >  NC_000913/3853484‑3853663

aGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCt                                                                                         <  1:1209803/93‑1 (MQ=255)

 gCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTg                                                                                        <  1:3326968/93‑1 (MQ=255)

   cAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGc                                                                                      <  2:2951851/93‑1 (MQ=255)

    aaCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCt                                                                                     <  2:4332017/93‑1 (MQ=255)

    aaCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCt                                                                                     >  1:4439154/1‑93 (MQ=255)

    aaCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCt                                                                                     <  1:4525557/93‑1 (MQ=255)

     aCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCtt                                                                                    <  1:1643565/93‑1 (MQ=255)

     aCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCtt                                                                                    <  2:429695/93‑1 (MQ=255)

     aCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCtt                                                                                    >  1:4495444/1‑93 (MQ=255)

      cGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCttt                                                                                   <  2:1848859/93‑1 (MQ=255)

       gCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTg                                                                                  >  2:4350351/1‑93 (MQ=255)

        ccATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGc                                                                                 <  1:2155564/93‑1 (MQ=255)

        ccATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGc                                                                                 <  1:798098/93‑1 (MQ=255)

        ccATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGc                                                                                 <  2:2838152/93‑1 (MQ=255)

          aTCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCgg                                                                               >  2:582788/1‑93 (MQ=255)

           tCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGc                                                                              >  1:2395087/1‑93 (MQ=255)

            cAACGCGCCGTAGCACAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCt                                                                             <  1:953457/93‑1 (MQ=255)

              aCGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTAt                                                                           >  2:377/1‑93 (MQ=255)

              aCGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTAt                                                                           >  1:404824/1‑93 (MQ=255)

               cgcgCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATc                                                                          <  1:1156056/93‑1 (MQ=255)

                gcgcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATcc                                                                         <  2:4163146/93‑1 (MQ=255)

                  cccGTAGCCCAGCATGGTACGAACCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCgg                                                                       <  2:805976/92‑1 (MQ=255)

                    cGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCa                                                                     <  2:469232/93‑1 (MQ=255)

                    cGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCa                                                                     <  1:375937/93‑1 (MQ=255)

                     gttgCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATGCGGCAt                                                                    <  2:442319/90‑1 (MQ=255)

                      tAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATa                                                                   <  1:4034212/93‑1 (MQ=255)

                          ccAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATacaac                                                               <  2:3373384/93‑1 (MQ=255)

                          ccAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATacaac                                                               >  1:3605677/1‑93 (MQ=255)

                           cAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATacaaca                                                              >  2:208918/1‑93 (MQ=255)

                            aGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAacac                                                             <  2:4113415/93‑1 (MQ=255)

                            aGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAacac                                                             >  1:1421546/1‑93 (MQ=255)

                             gCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACAcc                                                            >  2:2212843/1‑93 (MQ=255)

                             gCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACAcc                                                            <  2:1738450/93‑1 (MQ=255)

                              cATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCa                                                           <  1:3581166/93‑1 (MQ=255)

                               aTGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAg                                                          <  2:2922258/93‑1 (MQ=255)

                                tGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAgc                                                         >  1:3128595/1‑92 (MQ=255)

                                 ggTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTc                                                        <  2:3071999/93‑1 (MQ=255)

                                 ggTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTc                                                        <  1:1943294/93‑1 (MQ=255)

                                  gTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGTCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTcc                                                       <  1:1333646/93‑1 (MQ=255)

                                   tACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTccc                                                      <  2:2678292/93‑1 (MQ=255)

                                   tACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTccc                                                      >  1:2948981/1‑93 (MQ=255)

                                    aCGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCa                                                     <  1:1865901/93‑1 (MQ=255)

                                     cGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAt                                                    >  2:3261585/1‑93 (MQ=255)

                                     cGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAt                                                    <  2:1935048/93‑1 (MQ=255)

                                      gAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATa                                                   <  2:1978121/93‑1 (MQ=255)

                                       aaaCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATaa                                                  <  1:3795748/93‑1 (MQ=255)

                                       aaaCCACGCCAGTGATGTGCGCTCCGGCTGCAATCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATaa                                                  <  2:436097/93‑1 (MQ=255)

                                        aaCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAAc                                                 <  2:465614/93‑1 (MQ=255)

                                           cACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGAt                                              <  1:3428110/93‑1 (MQ=255)

                                            aCGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATc                                             <  1:1717352/93‑1 (MQ=255)

                                            aCGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATc                                             >  1:1250206/1‑93 (MQ=255)

                                             cGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCa                                            <  1:2589772/93‑1 (MQ=255)

                                                 aGTGATGTGCGCTCCGCCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGCCTATCCGGCATACAACACCAGTCCCATAACGATCACCGc                                        <  2:1814066/93‑1 (MQ=255)

                                                  gTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGcc                                       >  2:3555549/1‑93 (MQ=255)

                                                  gTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGcc                                       >  1:4604678/1‑93 (MQ=255)

                                                    gATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCAc                                     >  2:2753164/1‑93 (MQ=255)

                                                    gATGTGCGCTCCGGCTGCAGTCCTGGGGCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCAc                                     <  1:495203/93‑1 (MQ=255)

                                                       gtgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGAc                                  <  2:4199999/93‑1 (MQ=255)

                                                       gtgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGAc                                  >  2:3699712/1‑93 (MQ=255)

                                                        tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGAcc                                 <  1:916605/93‑1 (MQ=255)

                                                          cgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCAt                               >  2:4477506/1‑93 (MQ=255)

                                                          cgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCAt                               >  1:3399283/1‑93 (MQ=255)

                                                             tCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa                            <  2:1256587/93‑1 (MQ=255)

                                                             tCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa                            >  1:2077755/1‑93 (MQ=255)

                                                             tCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa                            <  1:2367299/93‑1 (MQ=255)

                                                             tCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa                            >  2:398093/1‑93 (MQ=255)

                                                             tCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa                            >  2:2271497/1‑93 (MQ=255)

                                                             tCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa                            <  1:4356565/93‑1 (MQ=255)

                                                             tCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa                            <  1:3244880/93‑1 (MQ=255)

                                                              ccGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAat                           <  2:15292/93‑1 (MQ=255)

                                                               cGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAata                          <  1:2921975/93‑1 (MQ=255)

                                                                  cTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTa                       <  1:564132/93‑1 (MQ=255)

                                                                   tGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTaa                      <  1:1118920/93‑1 (MQ=255)

                                                                   tGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTaa                      <  2:3042849/93‑1 (MQ=255)

                                                                   tGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTaa                      <  2:156919/93‑1 (MQ=255)

                                                                   tGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTaa                      <  2:2468503/93‑1 (MQ=255)

                                                                    gCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAg                     >  2:3402140/1‑93 (MQ=255)

                                                                    gCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAg                     >  1:418683/1‑93 (MQ=255)

                                                                     cAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGc                    <  1:1002457/93‑1 (MQ=255)

                                                                        tCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTaa                 >  2:3432885/1‑93 (MQ=255)

                                                                         ccTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAAt                >  2:3356804/1‑93 (MQ=255)

                                                                         ccTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAAt                <  2:2127965/93‑1 (MQ=255)

                                                                          cTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATg               <  1:2733156/93‑1 (MQ=255)

                                                                           tGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGa              <  2:1364291/93‑1 (MQ=255)

                                                                           tGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGa              <  1:3961997/93‑1 (MQ=255)

                                                                            gggTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCGTCAATATTAAGCTAATGAt             <  2:4562142/93‑1 (MQ=255)

                                                                            gggTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAt             <  1:2875481/93‑1 (MQ=255)

                                                                            gggTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAt             >  1:2639714/1‑93 (MQ=255)

                                                                              gTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATta           <  2:3684431/93‑1 (MQ=255)

                                                                                 ggCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaata        <  1:989435/93‑1 (MQ=255)

                                                                                 cgCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaata        <  1:3543124/92‑1 (MQ=255)

                                                                                  gCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaataa       <  2:3307695/93‑1 (MQ=255)

                                                                                  gCAATGCCCCTGGCTTTGCGTCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaataa       <  2:1659809/93‑1 (MQ=255)

                                                                                   cAATGCGCCTGGCTTTGCCGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAg      <  1:3057109/93‑1 (MQ=255)

                                                                                    aaTGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGc     <  2:1109760/93‑1 (MQ=255)

                                                                                    aaTGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGc     <  2:2506014/93‑1 (MQ=255)

                                                                                     aTGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATATCGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCt    <  2:3782163/93‑1 (MQ=255)

                                                                                     aTGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCt    >  2:4083842/1‑93 (MQ=255)

                                                                                      tGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTg   <  2:3621176/93‑1 (MQ=255)

                                                                                       gcgcCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGt  <  2:913663/93‑1 (MQ=255)

AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGT  >  NC_000913/3853484‑3853663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGT  >  NC_000913/3853482‑3853667

ATAGCCAACTCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCC                                                                                              <  SRR4302535.3436606/94‑1 (MQ=60)

ATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCC                                                                                              <  SRR4302535.1909142/94‑1 (MQ=60)

ATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCC                                                                                              >  SRR4302535.9105/1‑94 (MQ=60)

ATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCC                                                                                              >  SRR4302535.3193924/1‑94 (MQ=60)

 TAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCT                                                                                             <  SRR4302535.1594614/94‑1 (MQ=60)

 TAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCT                                                                                             <  SRR4302535.4015222/94‑1 (MQ=60)

 TAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCT                                                                                             <  SRR4302535.1528761/94‑1 (MQ=60)

 TAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCT                                                                                             <  SRR4302535.2591899/94‑1 (MQ=60)

  AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTG                                                                                            <  SRR4302535.1850676/94‑1 (MQ=60)

  AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTG                                                                                            <  SRR4302535.1218496/94‑1 (MQ=60)

  AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTG                                                                                            <  SRR4302535.3000795/94‑1 (MQ=60)

  AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTG                                                                                            <  SRR4302535.2552396/94‑1 (MQ=60)

   GCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGG                                                                                           <  SRR4302535.3350120/94‑1 (MQ=60)

   GCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGG                                                                                           <  SRR4302535.1290316/94‑1 (MQ=60)

     CAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCT                                                                                         >  SRR4302535.4469582/1‑94 (MQ=60)

      AACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTT                                                                                        <  SRR4302535.4556558/94‑1 (MQ=60)

      AACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTT                                                                                        <  SRR4302535.263927/94‑1 (MQ=60)

      AACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTT                                                                                        >  SRR4302535.4526302/1‑94 (MQ=60)

       ACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTT                                                                                       <  SRR4302535.1655446/94‑1 (MQ=60)

        CGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTG                                                                                      <  SRR4302535.356158/94‑1 (MQ=60)

        CGCCATCAACGCGCCGTAGCCCAGCATGGGACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTG                                                                                      >  SRR4302535.4525013/1‑94 (MQ=60)

          CCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCG                                                                                    <  SRR4302535.2171054/94‑1 (MQ=60)

          CCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCG                                                                                    <  SRR4302535.803699/94‑1 (MQ=60)

           CATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGG                                                                                   >  SRR4302535.1397999/1‑94 (MQ=60)

           CATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGG                                                                                   >  SRR4302535.1428197/1‑94 (MQ=60)

            ATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGC                                                                                  >  SRR4302535.557783/1‑94 (MQ=60)

            ATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGC                                                                                  >  SRR4302535.2412300/1‑94 (MQ=60)

              CAACGCGCCGTAGCACAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTA                                                                                <  SRR4302535.960213/94‑1 (MQ=60)

               AATGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTAT                                                                               <  SRR4302535.2784315/94‑1 (MQ=60)

               AACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTAT                                                                               <  SRR4302535.1174056/94‑1 (MQ=60)

               AACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTAT                                                                               >  SRR4302535.407658/1‑94 (MQ=60)

               AACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTAT                                                                               >  SRR4302535.3451150/1‑94 (MQ=60)

                 CGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCC                                                                             <  SRR4302535.1164315/94‑1 (MQ=60)

                   CGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCGATGCGCCTGGCTTTGCGGCTATCCGG                                                                           >  SRR4302535.2216896/1‑94 (MQ=60)

                      CGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCAT                                                                        <  SRR4302535.378543/94‑1 (MQ=60)

                      CGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCAT                                                                        >  SRR4302535.4221423/1‑94 (MQ=60)

                        TAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATAC                                                                      <  SRR4302535.3808267/94‑1 (MQ=60)

                        TAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATAC                                                                      <  SRR4302535.4061831/94‑1 (MQ=60)

                           CCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAAC                                                                   >  SRR4302535.3668558/1‑94 (MQ=60)

                           CCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAAC                                                                   >  SRR4302535.3630690/1‑94 (MQ=60)

                            CCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACA                                                                  <  SRR4302535.314931/94‑1 (MQ=60)

                             CAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACAC                                                                 >  SRR4302535.1431696/1‑94 (MQ=60)

                              AGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACC                                                                >  SRR4302535.1146647/1‑94 (MQ=60)

                              AGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACC                                                                >  SRR4302535.1325662/1‑94 (MQ=60)

                                CATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAG                                                              <  SRR4302535.3606005/94‑1 (MQ=60)

                                 ATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGT                                                             <  SRR4302535.3365963/94‑1 (MQ=60)

                                 ATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGC                                                             >  SRR4302535.3150384/1‑94 (MQ=60)

                                  TGGTACGAAACCACGCCAGTGATGTGCTCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTC                                                            <  SRR4302535.4036698/94‑1 (MQ=60)

                                   GGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCC                                                           <  SRR4302535.4595906/94‑1 (MQ=60)

                                   GGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCC                                                           <  SRR4302535.1957290/94‑1 (MQ=60)

                                    GTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGTCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCC                                                          <  SRR4302535.1343159/94‑1 (MQ=60)

                                    GTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCC                                                          >  SRR4302535.2969699/1‑94 (MQ=60)

                                    GTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCC                                                          >  SRR4302535.269943/1‑94 (MQ=60)

                                      ACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAT                                                        <  SRR4302535.672687/94‑1 (MQ=60)

                                      ACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAT                                                        <  SRR4302535.1879348/94‑1 (MQ=60)

                                       CGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATA                                                       <  SRR4302535.4531001/94‑1 (MQ=60)

                                         AAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAAC                                                     <  SRR4302535.3821914/94‑1 (MQ=60)

                                         AAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAAC                                                     >  SRR4302535.4714916/1‑94 (MQ=60)

                                             CACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATC                                                 >  SRR4302535.1259132/1‑94 (MQ=60)

                                             CACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATC                                                 >  SRR4302535.4069000/1‑94 (MQ=60)

                                             CACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATC                                                 <  SRR4302535.3451939/94‑1 (MQ=60)

                                              ACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCA                                                <  SRR4302535.1729777/94‑1 (MQ=60)

                                               CGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCAC                                               <  SRR4302535.2608368/94‑1 (MQ=60)

                                                   AGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCC                                           <  SRR4302535.1932040/94‑1 (MQ=60)

                                                   AGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCC                                           >  SRR4302535.4635981/1‑94 (MQ=60)

                                                    GTGATGTGCGCTCCGGCTGCAGTCCTGGGGCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCA                                          >  SRR4302535.1702377/1‑94 (MQ=60)

                                                     TGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCAC                                         <  SRR4302535.3595387/94‑1 (MQ=60)

                                                      GATGTGCGCTCCGGCTGCAGTCCTGGGGCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACG                                        <  SRR4302535.498677/94‑1 (MQ=60)

                                                         GTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACC                                     <  SRR4302535.4271235/94‑1 (MQ=60)

                                                          TGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCA                                    <  SRR4302535.923110/94‑1 (MQ=60)

                                                           GCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCAT                                   >  SRR4302535.3422935/1‑94 (MQ=60)

                                                              CTCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAA                                >  SRR4302535.2092723/1‑94 (MQ=60)

                                                               TCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAAT                               <  SRR4302535.3267417/94‑1 (MQ=60)

                                                               TCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAAT                               <  SRR4302535.4386388/94‑1 (MQ=60)

                                                               TCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAAT                               <  SRR4302535.2784238/94‑1 (MQ=60)

                                                               TCCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAAT                               <  SRR4302535.2384295/94‑1 (MQ=60)

                                                                CCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATA                              <  SRR4302535.1238626/94‑1 (MQ=60)

                                                                CCGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATA                              <  SRR4302535.852101/94‑1 (MQ=60)

                                                                 CGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT                             >  SRR4302535.3263193/1‑94 (MQ=60)

                                                                 CGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT                             <  SRR4302535.2947838/94‑1 (MQ=60)

                                                                 CGGCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT                             <  SRR4302535.2942585/94‑1 (MQ=60)

                                                                   GCTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTA                           >  SRR4302535.3629184/1‑94 (MQ=60)

                                                                    CTGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAA                          <  SRR4302535.568083/94‑1 (MQ=60)

                                                                     TGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAG                         <  SRR4302535.1126903/94‑1 (MQ=60)

                                                                     TGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAG                         <  SRR4302535.3827127/94‑1 (MQ=60)

                                                                     TGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAG                         >  SRR4302535.421616/1‑94 (MQ=60)

                                                                       CAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCT                       <  SRR4302535.1009576/94‑1 (MQ=60)

                                                                       CAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCT                       >  SRR4302535.3298447/1‑94 (MQ=60)

                                                                       CAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCT                       <  SRR4302535.3319213/94‑1 (MQ=60)

                                                                        AGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTA                      >  SRR4302535.214872/1‑94 (MQ=60)

                                                                          TCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAAT                    <  SRR4302535.291910/94‑1 (MQ=60)

                                                                           CCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATG                   <  SRR4302535.1025509/94‑1 (MQ=60)

                                                                            CTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGA                  <  SRR4302535.977514/94‑1 (MQ=60)

                                                                            CTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGA                  <  SRR4302535.2752663/94‑1 (MQ=60)

                                                                            CTGGGTCGGCAATACGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGA                  <  SRR4302535.2400018/94‑1 (MQ=60)

                                                                             TGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT                 >  SRR4302535.4124065/1‑94 (MQ=60)

                                                                             TGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT                 <  SRR4302535.1975192/94‑1 (MQ=60)

                                                                             TGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT                 >  SRR4302535.2658623/1‑94 (MQ=60)

                                                                             TGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT                 <  SRR4302535.3989056/94‑1 (MQ=60)

                                                                              GGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATT                <  SRR4302535.2895851/94‑1 (MQ=60)

                                                                                 TCGGCATTGCGCCTGGCTTTGTGGCTATCCGGCATACAACACAAGT‑CCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATA            <  SRR4302535.954605/94‑1 (MQ=60)

                                                                                 TCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAAT             >  SRR4302535.2111866/1‑94 (MQ=60)

                                                                                 TCGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAAT             <  SRR4302535.1473852/94‑1 (MQ=60)

                                                                                  CGGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATA            >  SRR4302535.3779795/1‑94 (MQ=60)

                                                                                   GGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAA           <  SRR4302535.996461/94‑1 (MQ=60)

                                                                                   CGCAATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAA           <  SRR4302535.3567737/94‑1 (MQ=60)

                                                                                     CAATGCGCCTGGCTTTGCCGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGC         <  SRR4302535.3078501/94‑1 (MQ=60)

                                                                                      AATGCGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCT        >  SRR4302535.4386964/1‑94 (MQ=60)

                                                                                      AATGCGCCTGGCGTTGCGGCTTCCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCT        <  SRR4302535.51930/94‑1 (MQ=60)

                                                                                          CGCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTG    <  SRR4302535.475698/94‑1 (MQ=60)

                                                                                           GCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGG   <  SRR4302535.2786441/94‑1 (MQ=60)

                                                                                           GCCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGG   <  SRR4302535.817436/94‑1 (MQ=60)

                                                                                            CCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGATGTTGGT  >  SRR4302535.1319087/1‑94 (MQ=60)

ATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGT  >  NC_000913/3853482‑3853667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`