Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,857,968	T→C	L30S (TTA→TCA)	yidL →	putative ARAC‑type regulatory protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,857,968	0	T	C	99.6%	751.3 / ‑5.4	233	L30S (TTA→TCA)	yidL	putative ARAC‑type regulatory protein
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (131/101); total (131/102)
Fisher's exact test for biased strand distribution p-value = 4.38e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 234 total aligned reads displayed.

TTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTTATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGC  >  NC_000913/3857878‑3858057

ttGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCAt                                                                                         <  1:815712/93‑1 (MQ=255)

ttGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCAt                                                                                         <  2:1500411/93‑1 (MQ=255)

 tgtgAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTGCCTCAtt                                                                                        <  1:241736/93‑1 (MQ=255)

 tgtgAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCAtt                                                                                        <  2:2139207/93‑1 (MQ=255)

 tgtgAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCAtt                                                                                        <  2:2801171/93‑1 (MQ=255)

  gtgAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACATTATTCCCTCATTg                                                                                       >  2:4129748/1‑93 (MQ=255)

   tgAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGa                                                                                      <  2:496750/93‑1 (MQ=255)

      gCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTa                                                                                   <  1:4405551/93‑1 (MQ=255)

      gCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTa                                                                                   <  2:575862/93‑1 (MQ=255)

       cATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTTATTGATTaa                                                                                  <  2:2841941/93‑1 (MQ=255)

       cATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTaa                                                                                  >  2:3461417/1‑93 (MQ=255)

        aaaaTTCGGCGGAAGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAAc                                                                                 <  1:3085163/91‑1 (MQ=255)

          aaTTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGa                                                                               >  1:3899796/1‑93 (MQ=255)

             tCGCCGGAAGGATATTAAAATGAATGGAAAATTGCAAAGTTCATATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGaaaa                                                                            <  1:1105570/93‑1 (MQ=255)

                ccGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAAtgt                                                                         <  2:757440/93‑1 (MQ=255)

                 cGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAAtgtg                                                                        <  2:2477815/93‑1 (MQ=255)

                  ggAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGa                                                                       <  2:3489291/93‑1 (MQ=255)

                   gAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGAt                                                                      >  2:3317533/1‑93 (MQ=255)

                   gAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGAt                                                                      >  2:1329718/1‑93 (MQ=255)

                    aGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGAtc                                                                     <  1:1428304/93‑1 (MQ=255)

                      ggATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGAtctc                                                                   <  1:396440/93‑1 (MQ=255)

                        atatTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCa                                                                 <  2:420779/93‑1 (MQ=255)

                        atatTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCa                                                                 <  1:231293/93‑1 (MQ=255)

                         tatTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAg                                                                <  2:4595946/93‑1 (MQ=255)

                         tatTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAg                                                                >  2:85945/1‑93 (MQ=255)

                         tatTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAg                                                                <  1:1561320/93‑1 (MQ=255)

                         tatTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAg                                                                >  1:2904265/1‑93 (MQ=255)

                         aatTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAg                                                                <  2:1811187/92‑1 (MQ=255)

                          atTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGc                                                               >  2:1073916/1‑93 (MQ=255)

                          atTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGc                                                               >  1:2890600/1‑93 (MQ=255)

                          atTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGc                                                               >  2:1884553/1‑93 (MQ=255)

                           ttAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCg                                                              <  1:1788024/93‑1 (MQ=255)

                             aaaaTGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGa                                                            >  1:980652/1‑93 (MQ=255)

                               aatgaatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAt                                                          <  1:2791464/93‑1 (MQ=255)

                               aatgaatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAt                                                          <  1:4244585/93‑1 (MQ=255)

                                atgaatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAtt                                                         >  1:2127035/1‑93 (MQ=255)

                                atgaatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAtt                                                         <  2:3018988/93‑1 (MQ=255)

                                atgaatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAtt                                                         >  1:3329713/1‑93 (MQ=255)

                                 tgaatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAttt                                                        >  2:1619131/1‑93 (MQ=255)

                                  gaatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTtc                                                       >  2:475039/1‑93 (MQ=255)

                                   aatgGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGCATTtct                                                      >  1:3997211/1‑93 (MQ=255)

                                      ggAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTg                                                   >  2:1966279/1‑93 (MQ=255)

                                      ggAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTg                                                   <  2:1748594/93‑1 (MQ=255)

                                       gAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGa                                                  >  2:2112835/1‑93 (MQ=255)

                                       gAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGa                                                  >  1:1271684/1‑93 (MQ=255)

                                        aaaaTTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGAt                                                 <  1:2973409/93‑1 (MQ=255)

                                         aaaTTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGAtc                                                <  2:3757176/93‑1 (MQ=255)

                                          aaTTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGAtct                                               >  1:536443/1‑93 (MQ=255)

                                          aaTTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGAtct                                               >  2:2904567/1‑93 (MQ=255)

                                           aTTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGAtctc                                              >  2:2439245/1‑93 (MQ=255)

                                            ttGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCg                                             >  1:2180151/1‑93 (MQ=255)

                                            ttGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCg                                             >  1:2060351/1‑93 (MQ=255)

                                             tGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGc                                            >  1:4331350/1‑93 (MQ=255)

                                             tGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGc                                            <  1:3500763/93‑1 (MQ=255)

                                                aaaGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGctct                                         >  2:2716289/1‑93 (MQ=255)

                                                   gTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGc                                      <  2:1267794/93‑1 (MQ=255)

                                                   gTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGc                                      >  1:2730669/1‑93 (MQ=255)

                                                   gTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGc                                      >  1:2868194/1‑93 (MQ=255)

                                                    ttCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCa                                     <  1:1026819/93‑1 (MQ=255)

                                                    ttCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCa                                     <  2:3138759/93‑1 (MQ=255)

                                                    ttCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCa                                     >  1:2999157/1‑93 (MQ=255)

                                                     tCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCAt                                    >  1:2015/1‑93 (MQ=255)

                                                     tCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCAt                                    >  2:1731422/1‑93 (MQ=255)

                                                     tCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCAt                                    <  2:2253536/93‑1 (MQ=255)

                                                         aTGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCt                                >  2:21833/1‑93 (MQ=255)

                                                          tGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTa                               >  2:4377549/1‑93 (MQ=255)

                                                          tGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTa                               >  1:595387/1‑93 (MQ=255)

                                                             aaaaaaCGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGc                            >  1:2623619/1‑93 (MQ=255)

                                                             aaaaaaCGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGc                            <  2:2606945/93‑1 (MQ=255)

                                                              aaaaaCGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGcc                           <  1:4044302/93‑1 (MQ=255)

                                                                aaaCGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCcga                         <  2:328718/93‑1 (MQ=255)

                                                                     aaaCTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGc                    >  2:2539564/1‑93 (MQ=255)

                                                                      aaCTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCa                   <  1:1923196/93‑1 (MQ=255)

                                                                       aCTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCAt                  <  1:450930/93‑1 (MQ=255)

                                                                       aCTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCAt                  <  1:776032/93‑1 (MQ=255)

                                                                         tCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTa                <  2:2871528/93‑1 (MQ=255)

                                                                         tCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTa                >  2:2038253/1‑93 (MQ=255)

                                                                          ccGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTAc               <  1:842729/93‑1 (MQ=255)

                                                                          ccGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTAc               <  1:457860/93‑1 (MQ=255)

                                                                           cGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTAcc              >  1:514463/1‑93 (MQ=255)

                                                                           cGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTAcc              >  1:1678947/1‑93 (MQ=255)

                                                                             tACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCgg            <  2:292603/93‑1 (MQ=255)

                                                                             tACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCgg            >  2:4646364/1‑93 (MQ=255)

                                                                             tACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCgg            >  1:4179401/1‑93 (MQ=255)

                                                                             tACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCgg            >  2:2998652/1‑93 (MQ=255)

                                                                              aCAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCggg           >  1:1157222/1‑93 (MQ=255)

                                                                               cAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCTGACGAGCATTACCgggc          >  2:1649111/1‑92 (MQ=255)

                                                                               cAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGt          >  2:3193808/1‑93 (MQ=255)

                                                                                aaTATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTg         >  2:3621437/1‑93 (MQ=255)

                                                                                aaTATCCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTg         <  2:4631650/93‑1 (MQ=255)

                                                                                 atatTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGa        >  1:3187174/1‑93 (MQ=255)

                                                                                  tatTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGAt       <  1:1741532/93‑1 (MQ=255)

                                                                                   atTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATc      <  2:3803898/93‑1 (MQ=255)

                                                                                   atTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATc      <  1:1529722/93‑1 (MQ=255)

                                                                                    ttCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCt     <  2:3964729/93‑1 (MQ=255)

                                                                                    ttCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCt     <  2:3049400/93‑1 (MQ=255)

                                                                                    ttCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCt     <  1:3165477/93‑1 (MQ=255)

                                                                                    ttCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCt     >  2:1393141/1‑93 (MQ=255)

                                                                                     tCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTg    <  1:4628630/93‑1 (MQ=255)

                                                                                     tCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTg    >  1:1202846/1‑93 (MQ=255)

TTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTTATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGC  >  NC_000913/3857878‑3858057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGGTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTTATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGCCG  >  NC_000913/3857875‑3858059

AGGTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTC                                                                                             >  SRR4302535.4306746/1‑94 (MQ=60)

 GGTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCA                                                                                            >  SRR4302535.1207741/1‑94 (MQ=60)

 GGTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCA                                                                                            >  SRR4302535.2472572/1‑94 (MQ=60)

 GGTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCA                                                                                            <  SRR4302535.670480/94‑1 (MQ=60)

 GGTTGTGAGCACAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTACAAAACGAAACTCCGTACAATATTCCCTCA                                                                                            <  SRR4302535.4358944/94‑1 (MQ=60)

  ggttggaggagaaatcgccggaagggttattAAATGGATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCAT                                                                                           <  SRR4302535.920548/63‑1 (MQ=60)

  GTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCAT                                                                                           <  SRR4302535.3051449/94‑1 (MQ=60)

  GTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCAT                                                                                           >  SRR4302535.2895690/1‑94 (MQ=60)

   TTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATT                                                                                          <  SRR4302535.821430/94‑1 (MQ=60)

    TGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTGCCTCATTG                                                                                         <  SRR4302535.243394/94‑1 (MQ=60)

      TGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGAT                                                                                       >  SRR4302535.3015457/1‑94 (MQ=60)

      TGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGAT                                                                                       <  SRR4302535.1260798/94‑1 (MQ=60)

      TGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGAT                                                                                       >  SRR4302535.2442038/1‑94 (MQ=60)

       GAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATT                                                                                      <  SRR4302535.2501335/94‑1 (MQ=60)

       GAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATT                                                                                      <  SRR4302535.3202377/94‑1 (MQ=60)

         GCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAA                                                                                    <  SRR4302535.4435702/94‑1 (MQ=60)

          CATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAAC                                                                                   <  SRR4302535.2686310/94‑1 (MQ=60)

           ATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACG                                                                                  <  SRR4302535.2862049/94‑1 (MQ=60)

           AAAATTCGGCGGAAGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACG                                                                                  <  SRR4302535.3106655/94‑1 (MQ=60)

            TAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGA                                                                                 >  SRR4302535.3926511/1‑94 (MQ=60)

             AATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAA                                                                                >  SRR4302535.3113352/1‑94 (MQ=60)

             AATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAA                                                                                >  SRR4302535.205489/1‑94 (MQ=60)

               TTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAA                                                                              <  SRR4302535.3476105/94‑1 (MQ=60)

                TCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAATCTCCGTACAATATTCCCTCATTGATTAACGAAAAT                                                                             <  SRR4302535.785700/94‑1 (MQ=60)

                TCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAAT                                                                             <  SRR4302535.1986585/94‑1 (MQ=60)

                TCGCCGGAAGGATATTAAAATGAATGGAAAATTGCAAAGTTCATATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAAT                                                                             <  SRR4302535.1113469/94‑1 (MQ=60)

                      GAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATC                                                                       >  SRR4302535.4536744/1‑94 (MQ=60)

                       AGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCT                                                                      >  SRR4302535.1976227/1‑94 (MQ=60)

                       AGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCT                                                                      <  SRR4302535.1438497/94‑1 (MQ=60)

                       AGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCT                                                                      <  SRR4302535.1786476/94‑1 (MQ=60)

                       AGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCT                                                                      >  SRR4302535.4038975/1‑94 (MQ=60)

                       AGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCT                                                                      >  SRR4302535.2184996/1‑94 (MQ=60)

                         GGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCC                                                                    <  SRR4302535.399216/94‑1 (MQ=60)

                           ATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAG                                                                  <  SRR4302535.232890/94‑1 (MQ=60)

                           ATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAG                                                                  >  SRR4302535.2924797/1‑94 (MQ=60)

                            TATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGC                                                                 <  SRR4302535.1572570/94‑1 (MQ=60)

                            TATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGC                                                                 >  SRR4302535.2911051/1‑94 (MQ=60)

                             ATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCG                                                                >  SRR4302535.4266608/1‑94 (MQ=60)

                              TTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGG                                                               <  SRR4302535.1800960/94‑1 (MQ=60)

                              TTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCAT                                      <  SRR4302535.1481524/94‑1 (MQ=60)

                               TAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGA                                                              >  SRR4302535.987620/1‑94 (MQ=60)

                               TAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGA                                                              >  SRR4302535.308175/1‑94 (MQ=60)

                               TAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGA                                                              >  SRR4302535.3248947/1‑94 (MQ=60)

                                 AAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAT                                                            >  SRR4302535.3532829/1‑94 (MQ=60)

                                 AAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAAT                                                            >  SRR4302535.44535/1‑94 (MQ=60)

                                  AATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATT                                                           >  SRR4302535.1208697/1‑94 (MQ=60)

                                  AATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATT                                                           >  SRR4302535.3352879/1‑94 (MQ=60)

                                  AATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATT                                                           <  SRR4302535.2811330/94‑1 (MQ=60)

                                  AATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATT                                                           <  SRR4302535.538358/94‑1 (MQ=60)

                                  AATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATT                                                           >  SRR4302535.67907/1‑94 (MQ=60)

                                  AATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATT                                                           <  SRR4302535.4273638/94‑1 (MQ=60)

                                  AATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATT                                                           >  SRR4302535.2142370/1‑94 (MQ=60)

                                   ATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTT                                                          >  SRR4302535.484820/1‑94 (MQ=60)

                                     GAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGCATTTCT                                                        >  SRR4302535.4024559/1‑94 (MQ=60)

                                     GAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCT                                                        <  SRR4302535.2287741/94‑1 (MQ=60)

                                        TGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTG                                                     >  SRR4302535.2161217/1‑94 (MQ=60)

                                         GGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGA                                                    >  SRR4302535.1280770/1‑94 (MQ=60)

                                          GAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGAT                                                   <  SRR4302535.3931504/94‑1 (MQ=60)

                                          GAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGAT                                                   >  SRR4302535.774343/1‑94 (MQ=60)

                                           AAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATC                                                  <  SRR4302535.2994281/94‑1 (MQ=60)

                                            AAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCT                                                 >  SRR4302535.540190/1‑94 (MQ=60)

                                            AAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCT                                                 >  SRR4302535.1723184/1‑94 (MQ=60)

                                             AATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTC                                                <  SRR4302535.1562279/94‑1 (MQ=60)

                                              ATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCG                                               <  SRR4302535.4017500/94‑1 (MQ=60)

                                              ATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCG                                               >  SRR4302535.40174/1‑94 (MQ=60)

                                              ATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCG                                               >  SRR4302535.2195711/1‑94 (MQ=60)

                                              ATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCG                                               >  SRR4302535.2075196/1‑94 (MQ=60)

                                              ATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCG                                               >  SRR4302535.4396313/1‑94 (MQ=60)

                                               TTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGC                                              >  SRR4302535.4360973/1‑94 (MQ=60)

                                                TGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCT                                             <  SRR4302535.3525101/94‑1 (MQ=60)

                                                  CAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCT                                           <  SRR4302535.1863280/94‑1 (MQ=60)

                                                   AAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTG                                          >  SRR4302535.2096291/1‑94 (MQ=60)

                                                   AAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTG                                          >  SRR4302535.174661/1‑94 (MQ=60)

                                                     AGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGC                                        >  SRR4302535.2888508/1‑94 (MQ=60)

                                                     AGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGC                                        >  SRR4302535.2750161/1‑94 (MQ=60)

                                                      GTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCA                                       >  SRR4302535.827021/1‑94 (MQ=60)

                                                      GTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCA                                       >  SRR4302535.572462/1‑94 (MQ=60)

                                                      GTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCA                                       >  SRR4302535.3020183/1‑94 (MQ=60)

                                                      GTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTAATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCA                                       >  SRR4302535.4649093/1‑94 (MQ=60)

                                                       TTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCAT                                      <  SRR4302535.1034110/94‑1 (MQ=60)

                                                       TTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCAT                                      >  SRR4302535.2035/1‑94 (MQ=60)

                                                         CAGATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTGGCTCTGGCATAC                                    >  SRR4302535.1525342/1‑94 (MQ=60)

                                                           GATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCT                                  <  SRR4302535.3143676/94‑1 (MQ=60)

                                                            ATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTA                                 >  SRR4302535.2827572/1‑94 (MQ=60)

                                                            ATGTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTA                                 >  SRR4302535.599559/1‑94 (MQ=60)

                                                              GTAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACG                               <  SRR4302535.855505/94‑1 (MQ=60)

                                                               TAAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGC                              >  SRR4302535.2642421/1‑94 (MQ=60)

                                                                AAAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCC                             >  SRR4302535.4700120/1‑94 (MQ=60)

                                                                 AAAAACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCG                            <  SRR4302535.4071992/94‑1 (MQ=60)

                                                                    AACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACG                         >  SRR4302535.1141949/1‑94 (MQ=60)

                                                                    AACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACG                         <  SRR4302535.1189631/94‑1 (MQ=60)

                                                                     ACGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGA                        >  SRR4302535.2915680/1‑94 (MQ=60)

                                                                      CGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAG                       <  SRR4302535.1100565/94‑1 (MQ=60)

                                                                      CGAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAG                       >  SRR4302535.15390/1‑94 (MQ=60)

                                                                       GAAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGC                      <  SRR4302535.2926390/94‑1 (MQ=60)

                                                                        AAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCA                     >  SRR4302535.2415540/1‑94 (MQ=60)

                                                                        AAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCA                     <  SRR4302535.992454/94‑1 (MQ=60)

                                                                        AAACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCA                     <  SRR4302535.4305620/94‑1 (MQ=60)

                                                                         AACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCAT                    <  SRR4302535.1937057/94‑1 (MQ=60)

                                                                          ACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATT                   <  SRR4302535.454087/94‑1 (MQ=60)

                                                                          ACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATT                   >  SRR4302535.902248/1‑94 (MQ=60)

                                                                          ACTCCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATT                   <  SRR4302535.781488/94‑1 (MQ=60)

                                                                             CCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACC                >  SRR4302535.1691103/1‑94 (MQ=60)

                                                                             CCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACC                <  SRR4302535.461060/94‑1 (MQ=60)

                                                                             CCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACC                >  SRR4302535.518059/1‑94 (MQ=60)

                                                                             CCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACC                <  SRR4302535.848650/94‑1 (MQ=60)

                                                                             CCGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACC                <  SRR4302535.4161506/94‑1 (MQ=60)

                                                                              CGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCG               >  SRR4302535.168252/1‑94 (MQ=60)

                                                                              CGTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCG               <  SRR4302535.2963292/94‑1 (MQ=60)

                                                                               GTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGG              >  SRR4302535.4208006/1‑94 (MQ=60)

                                                                               GTACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTATGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGG              >  SRR4302535.2791336/1‑94 (MQ=60)

                                                                                TACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGG             <  SRR4302535.1331593/94‑1 (MQ=60)

                                                                                TACAATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGG             >  SRR4302535.1165497/1‑94 (MQ=60)

                                                                                   AATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGA          >  SRR4302535.4226810/1‑94 (MQ=60)

                                                                                   AATATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGA          >  SRR4302535.3209215/1‑94 (MQ=60)

                                                                                     TATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATC        <  SRR4302535.1754119/94‑1 (MQ=60)

                                                                                      ATTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCT       <  SRR4302535.1540742/94‑1 (MQ=60)

                                                                                       TTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTG      >  SRR4302535.1211481/1‑94 (MQ=60)

                                                                                       TTCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTG      <  SRR4302535.3187419/94‑1 (MQ=60)

                                                                                        TCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGG     >  SRR4302535.3420165/1‑94 (MQ=60)

                                                                                        TCCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGG     <  SRR4302535.4660045/94‑1 (MQ=60)

                                                                                         CCCTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGC    >  SRR4302535.4554614/1‑94 (MQ=60)

                                                                                           CTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGTCG  >  SRR4302535.2072229/1‑94 (MQ=60)

                                                                                           CTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGCCG  >  SRR4302535.252576/1‑94 (MQ=60)

                                                                                           CTCATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGCCC  >  SRR4302535.1557902/1‑94 (MQ=60)

AGGTTGTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCAGATGTAAAAAACGAAACTCCGTACAATATTCCCTTATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGCCG  >  NC_000913/3857875‑3858059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`