Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,858,839	C→T	intergenic (+36/+137)	yidL → / ← glvG	putative ARAC‑type regulatory protein/putative 6‑phospho‑beta‑glucosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,858,839	0	C	T	100.0%	836.8 / NA	235	intergenic (+36/+137)	yidL/glvG	putative ARAC‑type regulatory protein/putative 6‑phospho‑beta‑glucosidase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (113/122); total (113/122)

Only 100 of 245 total aligned reads displayed.

TCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTG  >  NC_000913/3858747‑3858928

tCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGATGGCCTCCAGc                                                                                           >  1:613272/1‑93 (MQ=255)

  aGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTaa                                                                                         <  2:3423986/93‑1 (MQ=255)

      gTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCa                                                                                     >  1:3886483/1‑93 (MQ=255)

      gTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCa                                                                                     <  2:3722722/93‑1 (MQ=255)

      gTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCa                                                                                     <  2:1348191/93‑1 (MQ=255)

      gTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCa                                                                                     >  2:797259/1‑93 (MQ=255)

       tGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAt                                                                                    >  1:2049298/1‑93 (MQ=255)

       tGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAt                                                                                    >  1:714433/1‑93 (MQ=255)

        gCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATc                                                                                   <  2:3639123/93‑1 (MQ=255)

        gCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATc                                                                                   <  1:248772/93‑1 (MQ=255)

         cTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATcc                                                                                  <  1:2869164/93‑1 (MQ=255)

          tAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCa                                                                                 >  2:784502/1‑93 (MQ=255)

          tAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCa                                                                                 <  1:2619774/93‑1 (MQ=255)

            aaGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGa                                                                               <  2:190517/93‑1 (MQ=255)

             aGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGaa                                                                              >  2:1923029/1‑93 (MQ=255)

             aGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGaa                                                                              <  2:2590/93‑1 (MQ=255)

             aGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGaa                                                                              <  1:3459616/93‑1 (MQ=255)

             aGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGaa                                                                              <  2:3294067/93‑1 (MQ=255)

               aaTACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATa                                                                            <  2:2565382/93‑1 (MQ=255)

               aaTACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATa                                                                            <  2:699200/93‑1 (MQ=255)

               aaTACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATa                                                                            >  1:4466416/1‑93 (MQ=255)

                aTACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAg                                                                           >  1:1979768/1‑93 (MQ=255)

                 tACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGc                                                                          >  1:3544896/1‑93 (MQ=255)

                   cGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCtt                                                                        <  2:1504781/93‑1 (MQ=255)

                    ggACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCttt                                                                       <  1:1389036/93‑1 (MQ=255)

                     gACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTg                                                                      >  2:50127/1‑93 (MQ=255)

                     gACAAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTg                                                                      <  2:3355117/93‑1 (MQ=255)

                      aCCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTgg                                                                     <  2:1087523/93‑1 (MQ=255)

                      aCCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTgg                                                                     <  1:2752823/93‑1 (MQ=255)

                          gCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGAc                                                                 <  1:1087101/93‑1 (MQ=255)

                           cACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGAcc                                                                <  1:1414711/93‑1 (MQ=255)

                              ccAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAg                                                             <  1:1606314/93‑1 (MQ=255)

                               cAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAgg                                                            >  2:4659773/1‑93 (MQ=255)

                                aaCGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGgc                                                           >  2:1401648/1‑93 (MQ=255)

                                aaCGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGgc                                                           <  2:1730784/93‑1 (MQ=255)

                                aaCGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGgc                                                           <  2:4008088/93‑1 (MQ=255)

                                  cGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGgcgc                                                         <  1:1648670/93‑1 (MQ=255)

                                  cGGATGCCAGTCCACACAATTAACGTAACTCTCGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGgcgc                                                         >  1:1882775/1‑93 (MQ=255)

                                   ggATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCt                                                        <  1:3127134/93‑1 (MQ=255)

                                   ggATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCt                                                        >  1:4041625/1‑93 (MQ=255)

                                   ggATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCt                                                        >  1:415174/1‑93 (MQ=255)

                                    gATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTc                                                       >  1:944473/1‑93 (MQ=255)

                                    gATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTc                                                       <  2:3149259/93‑1 (MQ=255)

                                    gATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTc                                                       >  1:2324865/1‑93 (MQ=255)

                                       gCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGt                                                    >  2:1575959/1‑93 (MQ=255)

                                        ccAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTa                                                   <  2:1508780/93‑1 (MQ=255)

                                         cAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAc                                                  >  2:2718296/1‑93 (MQ=255)

                                         cAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAc                                                  >  1:3207903/1‑93 (MQ=255)

                                           gTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCg                                                >  1:1812362/1‑93 (MQ=255)

                                           gTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCg                                                <  2:1018096/93‑1 (MQ=255)

                                            tcaacacaATTAACGTATCTCTGGCCAGTACGCTTAGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGt                                               <  2:4531875/90‑1 (MQ=255)

                                            tCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGt                                               <  2:3486100/93‑1 (MQ=255)

                                              cacacaATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGttt                                             <  2:4277124/93‑1 (MQ=255)

                                               acacaATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGtttt                                            >  1:494748/1‑93 (MQ=255)

                                                   aaTTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGAc                                        >  1:130929/1‑93 (MQ=255)

                                                   aaTTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGAc                                        <  1:2736418/93‑1 (MQ=255)

                                                     ttAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACaa                                      >  1:1503513/1‑93 (MQ=255)

                                                      tAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAAc                                     <  1:3996051/93‑1 (MQ=255)

                                                      tAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAAc                                     <  1:3580552/93‑1 (MQ=255)

                                                      tAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAAc                                     <  1:178791/93‑1 (MQ=255)

                                                      tAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAAc                                     <  2:4010732/93‑1 (MQ=255)

                                                        aCGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGt                                   >  2:2205885/1‑93 (MQ=255)

                                                         cGTACCTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTa                                  <  2:1666052/93‑1 (MQ=255)

                                                           tAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAt                                <  2:3170454/93‑1 (MQ=255)

                                                           tAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAt                                >  1:1004541/1‑93 (MQ=255)

                                                           tAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAt                                >  1:2835595/1‑93 (MQ=255)

                                                           tAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAt                                <  1:1099411/93‑1 (MQ=255)

                                                            atctctGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATc                               <  2:2797119/91‑1 (MQ=255)

                                                               tctGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGGGCTCGGTAACGCTTTCGACAACGTAAtagac                            >  2:3216350/1‑89 (MQ=255)

                                                               tctGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGcc                            <  1:1966719/93‑1 (MQ=255)

                                                               tctGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGcc                            >  2:3547775/1‑93 (MQ=255)

                                                                 tGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTg                          <  2:1684257/93‑1 (MQ=255)

                                                                  ggCCAGTACGCTTTGTTGTCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGc                         <  1:3747799/93‑1 (MQ=255)

                                                                      aGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCcaca                     >  1:2387794/1‑93 (MQ=255)

                                                                       gTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAg                    >  2:574504/1‑93 (MQ=255)

                                                                       gTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAg                    >  2:1191172/1‑93 (MQ=255)

                                                                        tACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAgg                   >  2:2459759/1‑93 (MQ=255)

                                                                        gaCGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAgg                   <  1:534166/92‑1 (MQ=255)

                                                                         aCGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGt                  <  2:4164074/93‑1 (MQ=255)

                                                                         aCGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGt                  <  2:845484/93‑1 (MQ=255)

                                                                         aCGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGt                  <  2:1821095/93‑1 (MQ=255)

                                                                          cGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTg                 <  2:2917179/93‑1 (MQ=255)

                                                                           gCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGc                >  1:2013877/1‑93 (MQ=255)

                                                                            cTTTGTTGGCCTCCAGTAGCTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTCCGACAACGTAATCGCCTGCCACAGGTGCt               <  1:3829418/93‑1 (MQ=255)

                                                                            cTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCt               >  2:1757198/1‑93 (MQ=255)

                                                                            cTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCt               >  1:4291693/1‑93 (MQ=255)

                                                                             tttGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTg              >  1:3178851/1‑93 (MQ=255)

                                                                             tttGTTGGCCTCAAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTg              >  1:2532556/1‑93 (MQ=255)

                                                                              ttgttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGa             <  2:4410881/93‑1 (MQ=255)

                                                                              ttgttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGa             >  1:2208565/1‑93 (MQ=255)

                                                                                gttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGata           <  2:3686686/93‑1 (MQ=255)

                                                                                gttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGata           <  1:3256391/93‑1 (MQ=255)

                                                                                   ggCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAGTGGCCTGCCACAGGTGATTATATGa        >  1:644800/1‑93 (MQ=255)

                                                                                    gCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGaa       <  1:2332956/93‑1 (MQ=255)

                                                                                     ccTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGGGCTGATATGAAc      >  2:2507161/1‑93 (MQ=255)

                                                                                       tCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGc    <  1:4178597/93‑1 (MQ=255)

                                                                                       tCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGc    >  1:1720567/1‑93 (MQ=255)

                                                                                       tCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGc    >  1:1521131/1‑93 (MQ=255)

                                                                                       tCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGc    <  1:1329460/93‑1 (MQ=255)

                                                                                        ccAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCt   >  1:1893707/1‑93 (MQ=255)

TCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTG  >  NC_000913/3858747‑3858928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTCC  >  NC_000913/3858746‑3858932

GTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGATGGCCTCCAGC                                                                                               >  SRR4302535.617536/1‑94 (MQ=60)

 TCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTA                                                                                              >  SRR4302535.1121118/1‑94 (MQ=60)

   AGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAAC                                                                                            >  SRR4302535.1703951/1‑94 (MQ=60)

      CGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCA                                                                                         <  SRR4302535.209898/94‑1 (MQ=60)

      CGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCA                                                                                         >  SRR4302535.3913143/1‑94 (MQ=60)

      CGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCA                                                                                         >  SRR4302535.2355646/1‑94 (MQ=60)

      CGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCA                                                                                         >  SRR4302535.3960329/1‑94 (MQ=60)

       GTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAT                                                                                        >  SRR4302535.719449/1‑94 (MQ=60)

       GTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAT                                                                                        >  SRR4302535.3599125/1‑94 (MQ=60)

       GTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAT                                                                                        >  SRR4302535.2064053/1‑94 (MQ=60)

       GTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAT                                                                                        <  SRR4302535.1981363/94‑1 (MQ=60)

        TGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATC                                                                                       >  SRR4302535.2349094/1‑94 (MQ=60)

         GCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCC                                                                                      <  SRR4302535.1163562/94‑1 (MQ=60)

         GCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCC                                                                                      >  SRR4302535.666837/1‑94 (MQ=60)

         GCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCC                                                                                      <  SRR4302535.250483/94‑1 (MQ=60)

          CTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCA                                                                                     >  SRR4302535.734744/1‑94 (MQ=60)

          CTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCA                                                                                     <  SRR4302535.2889483/94‑1 (MQ=60)

           TAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAG                                                                                    <  SRR4302535.2384171/94‑1 (MQ=60)

           TAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAG                                                                                    <  SRR4302535.2697318/94‑1 (MQ=60)

           TAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAG                                                                                    <  SRR4302535.2638553/94‑1 (MQ=60)

            AAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGA                                                                                   >  SRR4302535.3865819/1‑94 (MQ=60)

              AGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAAT                                                                                 <  SRR4302535.1528041/94‑1 (MQ=60)

              AGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAAT                                                                                 <  SRR4302535.3483670/94‑1 (MQ=60)

               GAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATA                                                                                >  SRR4302535.4497056/1‑94 (MQ=60)

               GAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATA                                                                                <  SRR4302535.2804855/94‑1 (MQ=60)

                AATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAG                                                                               <  SRR4302535.163274/94‑1 (MQ=60)

                AATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAG                                                                               >  SRR4302535.1994023/1‑94 (MQ=60)

                 ATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGC                                                                              >  SRR4302535.3569513/1‑94 (MQ=60)

                    CGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTT                                                                           <  SRR4302535.2064076/94‑1 (MQ=60)

                     GGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTG                                                                          <  SRR4302535.3156647/94‑1 (MQ=60)

                     GGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTG                                                                          <  SRR4302535.2504676/94‑1 (MQ=60)

                     GGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTG                                                                          <  SRR4302535.1398950/94‑1 (MQ=60)

                     GGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTG                                                                          <  SRR4302535.4150146/94‑1 (MQ=60)

                       ACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGC                                                                        >  SRR4302535.270587/1‑94 (MQ=60)

                       ACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGC                                                                        <  SRR4302535.2772441/94‑1 (MQ=60)

                        CCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCG                                                                       <  SRR4302535.1604979/94‑1 (MQ=60)

                          AGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGAC                                                                     <  SRR4302535.178668/94‑1 (MQ=60)

                           GCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACC                                                                    <  SRR4302535.1094831/94‑1 (MQ=60)

                            CACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCG                                                                   <  SRR4302535.1424812/94‑1 (MQ=60)

                            CACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCG                                                                   >  SRR4302535.1891727/1‑94 (MQ=60)

                            CACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCG                                                                   >  SRR4302535.2048566/1‑94 (MQ=60)

                               CCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGG                                                                >  SRR4302535.3245085/1‑94 (MQ=60)

                               CCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGG                                                                <  SRR4302535.1414424/94‑1 (MQ=60)

                               CCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGG                                                                <  SRR4302535.1617904/94‑1 (MQ=60)

                                 AACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCG                                                              >  SRR4302535.512558/1‑94 (MQ=60)

                                  ACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGC                                                             >  SRR4302535.1896343/1‑94 (MQ=60)

                                  ACGGATGCCAGTCCACACAATTAACGTAACTCTCGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGC                                                             >  SRR4302535.1896344/1‑94 (MQ=60)

                                   CGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCT                                                            >  SRR4302535.418086/1‑94 (MQ=60)

                                   CGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCT                                                            >  SRR4302535.4069295/1‑94 (MQ=60)

                                   CGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCT                                                            <  SRR4302535.1660597/94‑1 (MQ=60)

                                    GGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTC                                                           >  SRR4302535.2341498/1‑94 (MQ=60)

                                    GGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTC                                                           >  SRR4302535.951160/1‑94 (MQ=60)

                                    GGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTC                                                           <  SRR4302535.1964619/94‑1 (MQ=60)

                                    GGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTC                                                           <  SRR4302535.3148912/94‑1 (MQ=60)

                                      ATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGG                                                         >  SRR4302535.1940218/1‑94 (MQ=60)

                                        GCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTA                                                       >  SRR4302535.1742280/1‑94 (MQ=60)

                                        GCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTA                                                       <  SRR4302535.1097802/94‑1 (MQ=60)

                                         CCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAC                                                      >  SRR4302535.3230123/1‑94 (MQ=60)

                                         CCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAC                                                      >  SRR4302535.4135035/1‑94 (MQ=60)

                                         CCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAC                                                      <  SRR4302535.4619652/94‑1 (MQ=60)

                                          CAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACC                                                     >  SRR4302535.2512239/1‑94 (MQ=60)

                                          CAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACC                                                     >  SRR4302535.3522398/1‑94 (MQ=60)

                                           AGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCG                                                    >  SRR4302535.1825469/1‑94 (MQ=60)

                                            GTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGT                                                   >  SRR4302535.1454889/1‑94 (MQ=60)

                                              CCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTT                                                 <  SRR4302535.151244/94‑1 (MQ=60)

                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                >  SRR4302535.3649796/1‑94 (MQ=60)

                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                <  SRR4302535.3806753/94‑1 (MQ=60)

                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                >  SRR4302535.498218/1‑94 (MQ=60)

                                                ACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTC                                               >  SRR4302535.4027633/1‑94 (MQ=60)

                                                ACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTC                                               >  SRR4302535.2779468/1‑94 (MQ=60)

                                                ACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTC                                               <  SRR4302535.549299/94‑1 (MQ=60)

                                                 CACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCG                                              <  SRR4302535.1390059/94‑1 (MQ=60)

                                                   CAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGAC                                            >  SRR4302535.131847/1‑94 (MQ=60)

                                                    AATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACA                                           <  SRR4302535.2755939/94‑1 (MQ=60)

                                                    AATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACA                                           >  SRR4302535.2768204/1‑94 (MQ=60)

                                                     ATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAA                                          >  SRR4302535.1514328/1‑94 (MQ=60)

                                                     ATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAA                                          >  SRR4302535.1340243/1‑94 (MQ=60)

                                                       TAACGTAACTCTGGCTAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACG                                        >  SRR4302535.2867727/1‑94 (MQ=60)

                                                       TAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACG                                        <  SRR4302535.3605367/94‑1 (MQ=60)

                                                       TAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACG                                        <  SRR4302535.180033/94‑1 (MQ=60)

                                                       TAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACG                                        <  SRR4302535.4023392/94‑1 (MQ=60)

                                                       TAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACG                                        <  SRR4302535.3216697/94‑1 (MQ=60)

                                                        AACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGACTAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGT                                       <  SRR4302535.2526481/94‑1 (MQ=60)

                                                        AACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGT                                       >  SRR4302535.567806/1‑94 (MQ=60)

                                                          CGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAA                                     >  SRR4302535.103517/1‑94 (MQ=60)

                                                           GTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAT                                    >  SRR4302535.1011674/1‑94 (MQ=60)

                                                           GTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAT                                    >  SRR4302535.2855719/1‑94 (MQ=60)

                                                            TAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATC                                   <  SRR4302535.1107266/94‑1 (MQ=60)

                                                            TAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATC                                   <  SRR4302535.1540356/94‑1 (MQ=60)

                                                            TAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATC                                   >  SRR4302535.4365140/1‑94 (MQ=60)

                                                            TAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATC                                   <  SRR4302535.420198/94‑1 (MQ=60)

                                                             AACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCG                                  <  SRR4302535.3049287/94‑1 (MQ=60)

                                                             AACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCG                                  <  SRR4302535.4242807/94‑1 (MQ=60)

                                                              ACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGC                                 >  SRR4302535.199777/1‑94 (MQ=60)

                                                               CTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCC                                >  SRR4302535.964084/1‑94 (MQ=60)

                                                               CTCTGGCCAGGACGCTTTGGTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCC                                <  SRR4302535.3176339/94‑1 (MQ=60)

                                                                TCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCT                               <  SRR4302535.1980895/94‑1 (MQ=60)

                                                                TCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCT                               <  SRR4302535.3895310/94‑1 (MQ=60)

                                                                 CTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTG                              >  SRR4302535.3669426/1‑94 (MQ=60)

                                                                 CTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTG                              >  SRR4302535.1171281/1‑94 (MQ=60)

                                                                 CTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTG                              >  SRR4302535.1906005/1‑94 (MQ=60)

                                                                  TGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAaaaaatactttgagaacgcggcggcgcggtccctttttttctcccctaacgacacc                             >  SRR4302535.1989098/1‑38 (MQ=60)

                                                                   GGCCAGTACGCTTTGTTGTCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCC                            <  SRR4302535.3773727/94‑1 (MQ=60)

                                                                      CAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACA                         >  SRR4302535.2404961/1‑94 (MQ=60)

                                                                       AGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAG                        >  SRR4302535.3234157/1‑94 (MQ=60)

                                                                         GACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGT                      <  SRR4302535.537902/94‑1 (MQ=60)

                                                                          ACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTG                     <  SRR4302535.3503041/94‑1 (MQ=60)

                                                                           CGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGC                    >  SRR4302535.2028385/1‑94 (MQ=60)

                                                                           CGCGTTGTTGGGCTCAAGTAACTGATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGC                    <  SRR4302535.473675/94‑1 (MQ=60)

                                                                            GCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCT                   >  SRR4302535.4321064/1‑94 (MQ=60)

                                                                             CTTTGTTGGCCTCCAGTAGCTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTCCGACAACGTAATCGCCTGCCACAGGTGCTG                  <  SRR4302535.3855829/94‑1 (MQ=60)

                                                                             CTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTG                  >  SRR4302535.3200833/1‑94 (MQ=60)

                                                                             CTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTG                  >  SRR4302535.2634943/1‑94 (MQ=60)

                                                                             CTTTGTTGGCCTCAAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTG                  >  SRR4302535.2550803/1‑94 (MQ=60)

                                                                              TTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGA                 >  SRR4302535.2224295/1‑94 (MQ=60)

                                                                              TTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTGGGCGACCGAGGCGCTCGGTACCGCTTTCGACAACGTAATCGCCTGCCACAGGTGCTGA                 <  SRR4302535.1814736/94‑1 (MQ=60)

                                                                               TTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGAT                <  SRR4302535.934045/94‑1 (MQ=60)

                                                                               TTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGAT                <  SRR4302535.620367/94‑1 (MQ=60)

                                                                                TGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATA               <  SRR4302535.132435/94‑1 (MQ=60)

                                                                                 GTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATAT              <  SRR4302535.3279017/94‑1 (MQ=60)

                                                                                   TGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAGTGGCCTGCCACAGGTGATTATATGA            >  SRR4302535.649299/1‑94 (MQ=60)

                                                                                   TGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGA            >  SRR4302535.3401933/1‑94 (MQ=60)

                                                                                     GCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAAC          <  SRR4302535.2349650/94‑1 (MQ=60)

                                                                                      CCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACG         >  SRR4302535.2296583/1‑94 (MQ=60)

                                                                                       CTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGC        >  SRR4302535.1733012/1‑94 (MQ=60)

                                                                                       CTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGC        >  SRR4302535.1532088/1‑94 (MQ=60)

                                                                                        TCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCT       <  SRR4302535.1338943/94‑1 (MQ=60)

                                                                                        TCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCT       <  SRR4302535.4207199/94‑1 (MQ=60)

                                                                                        TCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCT       >  SRR4302535.1907341/1‑94 (MQ=60)

                                                                                         CCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTG      <  SRR4302535.4283646/94‑1 (MQ=60)

                                                                                          CAGTAATTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTTCCTTTATCGATAACGTAATCGCCTGCCACTGGTGCTGATATGAACGCTGT     >  SRR4302535.4714194/1‑94 (MQ=60)

                                                                                          CAGTAACTCATCCAGAATAGCTTTGGCGCCCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGT     <  SRR4302535.2024599/94‑1 (MQ=60)

                                                                                           AGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTT    <  SRR4302535.3179218/94‑1 (MQ=60)

                                                                                           AGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTT    <  SRR4302535.22578/94‑1 (MQ=60)

                                                                                            GTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTC   <  SRR4302535.2069810/94‑1 (MQ=60)

                                                                                            GTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTC   >  SRR4302535.2842750/1‑94 (MQ=60)

                                                                                            GTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTC   <  SRR4302535.1212271/94‑1 (MQ=60)

                                                                                             TAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTCC  >  SRR4302535.192311/1‑94 (MQ=60)

GTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTCC  >  NC_000913/3858746‑3858932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`