Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,873,733	G→A	R204R (CGG→CGA)	yidX →	putative replicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,873,733	0	G	A	99.6%	1007.4 / ‑4.2	275	R204R (CGG→CGA)	yidX	putative replicase
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (139/135); minor base C (1/0); total (140/135)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.73e-01

Only 100 of 283 total aligned reads displayed.

CATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGAT  >  NC_000913/3873643‑3873822

      tGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAAcgc                                                                                   >  2:168700/1‑93 (MQ=255)

      tGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGAAGTAAACCAATAATCAGTAAGCGATCAAAcgc                                                                                   >  2:3031774/1‑93 (MQ=255)

       gCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAAcgcg                                                                                  >  2:1160783/1‑93 (MQ=255)

        ccAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGt                                                                                 >  1:1472727/1‑93 (MQ=255)

         cAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGtt                                                                                <  1:4006190/93‑1 (MQ=255)

          aGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGttt                                                                               >  2:2209898/1‑93 (MQ=255)

           gTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTa                                                                              >  2:267172/1‑93 (MQ=255)

            tGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTAt                                                                             >  1:2342777/1‑93 (MQ=255)

            tGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTAt                                                                             >  2:3228177/1‑93 (MQ=255)

             gACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATg                                                                            >  2:1103843/1‑93 (MQ=255)

              aCTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGc                                                                           <  1:4400046/93‑1 (MQ=255)

               cTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCt                                                                          <  1:3120552/93‑1 (MQ=255)

                tGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTg                                                                         >  1:3461200/1‑93 (MQ=255)

                 gTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGt                                                                        >  2:2741063/1‑93 (MQ=255)

                 gTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGt                                                                        >  1:963560/1‑93 (MQ=255)

                   tACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGttt                                                                      <  2:1087100/93‑1 (MQ=255)

                   tACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGttt                                                                      <  2:1931010/93‑1 (MQ=255)

                    aCGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTg                                                                     >  1:3816475/1‑93 (MQ=255)

                      gCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTgcc                                                                   <  2:2493007/93‑1 (MQ=255)

                      gCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTCTATGCTGTTTgcc                                                                   <  2:4603939/93‑1 (MQ=255)

                       cTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTgccc                                                                  >  1:859975/1‑93 (MQ=255)

                       cTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTgccc                                                                  >  1:4066490/1‑93 (MQ=255)

                       cTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTgccc                                                                  <  2:3100680/93‑1 (MQ=255)

                         ggACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTgcccgc                                                                <  1:2616210/93‑1 (MQ=255)

                           aCATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTgcccgccc                                                              >  2:3288463/1‑93 (MQ=255)

                            catcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCca                                                             <  1:1245631/93‑1 (MQ=255)

                              tcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCcaca                                                           >  2:1969627/1‑93 (MQ=255)

                              tcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCcaca                                                           <  2:3885994/93‑1 (MQ=255)

                              tcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCcaca                                                           >  2:4512513/1‑93 (MQ=255)

                               catTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAg                                                          >  2:642731/1‑93 (MQ=255)

                                 ttACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAt                                                        >  1:3320544/1‑93 (MQ=255)

                                 ttACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAt                                                        <  1:1861434/93‑1 (MQ=255)

                                 ttACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAt                                                        >  1:2715300/1‑93 (MQ=255)

                                 ttACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAt                                                        >  1:3283230/1‑93 (MQ=255)

                                 ttACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAt                                                        <  1:3057750/93‑1 (MQ=255)

                                    cTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTaa                                                     <  2:4180356/93‑1 (MQ=255)

                                       cACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTc                                                  <  1:3848965/93‑1 (MQ=255)

                                       cACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTc                                                  <  1:2993787/93‑1 (MQ=255)

                                       cACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTc                                                  <  2:2882734/93‑1 (MQ=255)

                                        aCCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCa                                                 <  2:3996656/93‑1 (MQ=255)

                                         ccGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAg                                                >  2:4413361/1‑93 (MQ=255)

                                         ccGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAg                                                <  2:437645/93‑1 (MQ=255)

                                          cGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGc                                               <  2:1215141/93‑1 (MQ=255)

                                             tGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGcaca                                            <  2:3637964/93‑1 (MQ=255)

                                             tGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGcaca                                            <  1:1907546/93‑1 (MQ=255)

                                              gCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACAt                                           >  1:32022/1‑93 (MQ=255)

                                                aaTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCACACGCGTTTATGCTGTTTGCCCGACCACAGATTAATTCAGCACATAc                                         >  1:1581384/1‑93 (MQ=255)

                                                aaTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATAc                                         >  2:4322773/1‑93 (MQ=255)

                                                 aTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACt                                        >  1:834454/1‑93 (MQ=255)

                                                 aTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACt                                        <  1:1142907/93‑1 (MQ=255)

                                                  tttCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACtt                                       >  2:226717/1‑93 (MQ=255)

                                                   ttCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTtc                                      <  2:1270684/93‑1 (MQ=255)

                                                    tCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTtct                                     >  1:4239863/1‑93 (MQ=255)

                                                    tCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTtct                                     >  2:4675396/1‑93 (MQ=255)

                                                     cTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTtctc                                    <  2:851908/93‑1 (MQ=255)

                                                     cTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTtctc                                    <  2:4242927/93‑1 (MQ=255)

                                                        gTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAAt                                 >  2:185471/1‑93 (MQ=255)

                                                         ttGTATATGCAGTAAACCAATAATCAGTAAGCGATCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATa                                <  2:4331749/93‑1 (MQ=255)

                                                         ttGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATa                                <  2:4102132/93‑1 (MQ=255)

                                                         ttGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATa                                <  2:2376703/93‑1 (MQ=255)

                                                         ttGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATa                                >  1:2459202/1‑93 (MQ=255)

                                                         ttGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATa                                >  2:2107235/1‑93 (MQ=255)

                                                         ttGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATa                                <  2:2323324/93‑1 (MQ=255)

                                                          tGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAg                               <  2:1513963/93‑1 (MQ=255)

                                                                tGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacg                         >  2:3192949/1‑93 (MQ=255)

                                                                tGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacg                         <  2:1415927/93‑1 (MQ=255)

                                                                  cAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgcc                       <  1:1959835/93‑1 (MQ=255)

                                                                   aGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgcca                      <  1:1414898/93‑1 (MQ=255)

                                                                   aGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgcca                      >  2:1454113/1‑93 (MQ=255)

                                                                   aGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgcca                      >  1:2542620/1‑93 (MQ=255)

                                                                    gTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccac                     <  2:386396/93‑1 (MQ=255)

                                                                     tAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccacg                    >  2:1787963/1‑93 (MQ=255)

                                                                     tAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccacg                    >  2:1443379/1‑93 (MQ=255)

                                                                     tAAACCAATAATCAGTAAGAGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccacg                    >  2:4569095/1‑93 (MQ=255)

                                                                       aaCCAATAATCAGTAAGCGAGCAAAGGCGTTTATGCTGTTTGCCCGCCCACAGCTTAATTCAGCACATACTTCTCAATAGCAAacgccacgcc                  >  2:1431904/1‑93 (MQ=255)

                                                                       aaCCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccacgcc                  >  2:300161/1‑93 (MQ=255)

                                                                       aaCCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccacgcc                  <  1:2220368/93‑1 (MQ=255)

                                                                        aCCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAAcgccacgcca                 >  1:1553947/1‑93 (MQ=255)

                                                                        aCCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAAcgccacgcca                 >  1:4461669/1‑93 (MQ=255)

                                                                         ccAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCACACAGATTAATTCAGGACATACTTCTCAATAGCAAACGCAACGACAt                >  2:796133/1‑93 (MQ=255)

                                                                          cAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATc               >  2:16282/1‑93 (MQ=255)

                                                                          cAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATc               >  2:3521684/1‑93 (MQ=255)

                                                                          cAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATc               <  2:3380969/93‑1 (MQ=255)

                                                                          cAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATc               >  2:3127127/1‑93 (MQ=255)

                                                                           aataatCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCt              >  1:1102702/1‑93 (MQ=255)

                                                                            ataatCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCtt             >  2:576351/1‑93 (MQ=255)

                                                                             taatCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTc            <  1:3671860/93‑1 (MQ=255)

                                                                             taatCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTc            >  1:589015/1‑93 (MQ=255)

                                                                             taatCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTc            >  1:1074893/1‑93 (MQ=255)

                                                                             taatCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTc            <  1:4514046/93‑1 (MQ=255)

                                                                               atCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGACCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCaa          >  1:2829445/1‑93 (MQ=255)

                                                                                tCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAg         >  1:2781452/1‑93 (MQ=255)

                                                                                tCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAg         <  1:4653890/93‑1 (MQ=255)

                                                                                 cAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAgg        <  1:1761674/93‑1 (MQ=255)

                                                                                  aGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGt       >  2:2616695/1‑93 (MQ=255)

                                                                                   gTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGtt      >  1:1822265/1‑93 (MQ=255)

                                                                                   gTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGtt      >  1:3777135/1‑93 (MQ=255)

                                                                                    tAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTa     <  2:138465/93‑1 (MQ=255)

                                                                                      aGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGa   <  1:1535546/93‑1 (MQ=255)

                                                                                       gCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGAt  >  2:1567747/1‑93 (MQ=255)

CATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGAT  >  NC_000913/3873643‑3873822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTG  >  NC_000913/3873640‑3873825

CAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGA                                                                                              <  SRR4302535.1589613/94‑1 (MQ=60)

CAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGA                                                                                              >  SRR4302535.2259699/1‑94 (MQ=60)

 CGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAG                                                                                             <  SRR4302535.1754974/94‑1 (MQ=60)

 AGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAG                                                                                             >  SRR4302535.347682/1‑94 (MQ=60)

 AGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAG                                                                                             >  SRR4302535.1678103/1‑94 (MQ=60)

 AGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAG                                                                                             >  SRR4302535.3755666/1‑94 (MQ=60)

 AGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAG                                                                                             >  SRR4302535.2242294/1‑94 (MQ=60)

    ATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAA                                                                                          >  SRR4302535.3824450/1‑94 (MQ=60)

    ATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAA                                                                                          >  SRR4302535.2187098/1‑94 (MQ=60)

    ATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAA                                                                                          >  SRR4302535.1931242/1‑94 (MQ=60)

    ATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAA                                                                                          >  SRR4302535.1811640/1‑94 (MQ=60)

        CTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGC                                                                                      <  SRR4302535.3758986/94‑1 (MQ=60)

        CTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGC                                                                                      >  SRR4302535.260626/1‑94 (MQ=60)

        CTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGC                                                                                      >  SRR4302535.2375829/1‑94 (MQ=60)

         TGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCG                                                                                     <  SRR4302535.953787/94‑1 (MQ=60)

          GCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGT                                                                                    >  SRR4302535.1483270/1‑94 (MQ=60)

           CCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTT                                                                                   <  SRR4302535.2055040/94‑1 (MQ=60)

            CAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTT                                                                                  <  SRR4302535.4033593/94‑1 (MQ=60)

             AGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTA                                                                                 <  SRR4302535.3424848/94‑1 (MQ=60)

             AGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTA                                                                                 >  SRR4302535.4486514/1‑94 (MQ=60)

              GTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTAT                                                                                <  SRR4302535.793241/94‑1 (MQ=60)

              GTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTAT                                                                                <  SRR4302535.3183632/94‑1 (MQ=60)

              GTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTAT                                                                                <  SRR4302535.865070/94‑1 (MQ=60)

              GTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTAT                                                                                >  SRR4302535.2359542/1‑94 (MQ=60)

              GTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTAT                                                                                <  SRR4302535.1612989/94‑1 (MQ=60)

               TGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATG                                                                               <  SRR4302535.3342095/94‑1 (MQ=60)

                 ACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCT                                                                             <  SRR4302535.4430160/94‑1 (MQ=60)

                 ACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCT                                                                             <  SRR4302535.298040/94‑1 (MQ=60)

                  CTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTG                                                                            <  SRR4302535.3142282/94‑1 (MQ=60)

                  CTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTG                                                                            >  SRR4302535.3485265/1‑94 (MQ=60)

                  CTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGCTTATGCTG                                                                            >  SRR4302535.4331513/1‑94 (MQ=60)

                   TGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGT                                                                           >  SRR4302535.970405/1‑94 (MQ=60)

                    GTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTT                                                                          <  SRR4302535.3162076/94‑1 (MQ=60)

                      TACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTG                                                                        >  SRR4302535.3842810/1‑94 (MQ=60)

                      TACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGCAAGCGAGCAAACGCGTTTATGCTGTTTG                                                                        >  SRR4302535.1589091/1‑94 (MQ=60)

                         GCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCC                                                                     >  SRR4302535.866046/1‑94 (MQ=60)

                         GCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCC                                                                     >  SRR4302535.4094316/1‑94 (MQ=60)

                            GGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCC                                                                  <  SRR4302535.2634969/94‑1 (MQ=60)

                               CATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCAC                                                               <  SRR4302535.1254520/94‑1 (MQ=60)

                               CATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCAC                                                               >  SRR4302535.190100/1‑94 (MQ=60)

                               CATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCAC                                                               >  SRR4302535.1962407/1‑94 (MQ=60)

                                ATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACA                                                              <  SRR4302535.2678781/94‑1 (MQ=60)

                                  CATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGA                                                            >  SRR4302535.4630743/1‑94 (MQ=60)

                                   ATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAT                                                           >  SRR4302535.187280/1‑94 (MQ=60)

                                   ATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAT                                                           >  SRR4302535.2734699/1‑94 (MQ=60)

                                   ATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAT                                                           <  SRR4302535.4037342/94‑1 (MQ=60)

                                   ATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAT                                                           >  SRR4302535.3306034/1‑94 (MQ=60)

                                   ATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGAT                                                           >  SRR4302535.3343649/1‑94 (MQ=60)

                                    TTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATT                                                          <  SRR4302535.3079142/94‑1 (MQ=60)

                                    TTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATT                                                          <  SRR4302535.590755/94‑1 (MQ=60)

                                    TTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATT                                                          <  SRR4302535.1874858/94‑1 (MQ=60)

                                     TACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTA                                                         <  SRR4302535.4538251/94‑1 (MQ=60)

                                     TACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTA                                                         <  SRR4302535.3846343/94‑1 (MQ=60)

                                        TGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATT                                                      <  SRR4302535.893508/94‑1 (MQ=60)

                                        TGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATT                                                      <  SRR4302535.4470601/94‑1 (MQ=60)

                                          CACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCA                                                    <  SRR4302535.3014776/94‑1 (MQ=60)

                                          CACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCA                                                    <  SRR4302535.3875455/94‑1 (MQ=60)

                                          CACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCA                                                    <  SRR4302535.2683122/94‑1 (MQ=60)

                                           ACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAG                                                   <  SRR4302535.2839598/94‑1 (MQ=60)

                                            CCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGC                                                  <  SRR4302535.1436381/94‑1 (MQ=60)

                                             CGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCA                                                 <  SRR4302535.3246307/94‑1 (MQ=60)

                                              GCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCAC                                                >  SRR4302535.2749481/1‑94 (MQ=60)

                                               CTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACA                                               >  SRR4302535.3088307/1‑94 (MQ=60)

                                               CTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACA                                               >  SRR4302535.3670987/1‑94 (MQ=60)

                                                TGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACAT                                              >  SRR4302535.1121813/1‑94 (MQ=60)

                                                TGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACAT                                              >  SRR4302535.32268/1‑94 (MQ=60)

                                                TGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACAT                                              >  SRR4302535.1548128/1‑94 (MQ=60)

                                                TGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACAT                                              <  SRR4302535.3996922/94‑1 (MQ=60)

                                                TGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACAT                                              <  SRR4302535.1921299/94‑1 (MQ=60)

                                                 GCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATA                                             <  SRR4302535.1849386/94‑1 (MQ=60)

                                                  CAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCACACGCGTTTATGCTGTTTGCCCGACCACAGATTAATTCAGCACATAC                                            >  SRR4302535.1592799/1‑94 (MQ=60)

                                                   AATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACT                                           >  SRR4302535.614698/1‑94 (MQ=60)

                                                   AATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACT                                           >  SRR4302535.840306/1‑94 (MQ=60)

                                                    ATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTT                                          >  SRR4302535.1578715/1‑94 (MQ=60)

                                                    ATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTT                                          <  SRR4302535.1151054/94‑1 (MQ=60)

                                                     TTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTC                                         <  SRR4302535.232065/94‑1 (MQ=60)

                                                      TTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCT                                        >  SRR4302535.4268884/1‑94 (MQ=60)

                                                         TGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAA                                     <  SRR4302535.1315313/94‑1 (MQ=60)

                                                          GGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAAT                                    <  SRR4302535.2901008/94‑1 (MQ=60)

                                                          GGTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAAT                                    <  SRR4302535.4175363/94‑1 (MQ=60)

                                                           GTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATA                                   >  SRR4302535.3870860/1‑94 (MQ=60)

                                                           GTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATA                                   <  SRR4302535.1688849/94‑1 (MQ=60)

                                                           GTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATA                                   >  SRR4302535.1547550/1‑94 (MQ=60)

                                                           GTTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATA                                   >  SRR4302535.2476937/1‑94 (MQ=60)

                                                            TTGTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAG                                  <  SRR4302535.3019227/94‑1 (MQ=60)

                                                              GTATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCA                                >  SRR4302535.1170265/1‑94 (MQ=60)

                                                                ATATGCAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAA                              >  SRR4302535.4069573/1‑94 (MQ=60)

                                                                 TATGCAGTAAACCCATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAAC                             >  SRR4302535.2550771/1‑94 (MQ=60)

                                                                     CAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCA                         >  SRR4302535.2560931/1‑94 (MQ=60)

                                                                     CAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCA                         <  SRR4302535.1973969/94‑1 (MQ=60)

                                                                     CAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCA                         >  SRR4302535.1109725/1‑94 (MQ=60)

                                                                     CAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCA                         <  SRR4302535.1489994/94‑1 (MQ=60)

                                                                     CAGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGACA                         >  SRR4302535.2296093/1‑94 (MQ=60)

                                                                      AGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGGTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCAC                        <  SRR4302535.1154506/94‑1 (MQ=60)

                                                                      AGTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCAC                        <  SRR4302535.1424999/94‑1 (MQ=60)

                                                                       GTAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACG                       <  SRR4302535.3286966/94‑1 (MQ=60)

                                                                        TAAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGC                      >  SRR4302535.4568381/1‑94 (MQ=60)

                                                                         AAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCC                     >  SRR4302535.2815462/1‑94 (MQ=60)

                                                                         AAACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCC                     >  SRR4302535.3030162/1‑94 (MQ=60)

                                                                          AACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCA                    >  SRR4302535.4492269/1‑94 (MQ=60)

                                                                          AACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCA                    >  SRR4302535.1794971/1‑94 (MQ=60)

                                                                          AACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCA                    <  SRR4302535.2236169/94‑1 (MQ=60)

                                                                          AACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCA                    >  SRR4302535.1565143/1‑94 (MQ=60)

                                                                          AACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCA                    >  SRR4302535.4502612/1‑94 (MQ=60)

                                                                           ACCAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCAT                   >  SRR4302535.3879462/1‑94 (MQ=60)

                                                                             CAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCT                 >  SRR4302535.2493397/1‑94 (MQ=60)

                                                                             CAATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCT                 >  SRR4302535.1110581/1‑94 (MQ=60)

                                                                               ATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTC               >  SRR4302535.3569629/1‑94 (MQ=60)

                                                                               ATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTC               <  SRR4302535.1111091/94‑1 (MQ=60)

                                                                               ATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTC               <  SRR4302535.4256522/94‑1 (MQ=60)

                                                                               ATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTC               >  SRR4302535.1082534/1‑94 (MQ=60)

                                                                               ATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTC               >  SRR4302535.593145/1‑94 (MQ=60)

                                                                               ATAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTC               >  SRR4302535.3373063/1‑94 (MQ=60)

                                                                                TAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCA              <  SRR4302535.3697288/94‑1 (MQ=60)

                                                                                TAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCA              <  SRR4302535.4545000/94‑1 (MQ=60)

                                                                                TAATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCA              <  SRR4302535.583089/94‑1 (MQ=60)

                                                                                 AATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGACCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAA             >  SRR4302535.2849529/1‑94 (MQ=60)

                                                                                  ATCAGTAAGCGAGCAAATGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAG            <  SRR4302535.3821183/94‑1 (MQ=60)

                                                                                  ATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAG            >  SRR4302535.2801254/1‑94 (MQ=60)

                                                                                  ATCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAG            <  SRR4302535.1439570/94‑1 (MQ=60)

                                                                                   TCAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGG           <  SRR4302535.4685397/94‑1 (MQ=60)

                                                                                    CAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACTGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGT          >  SRR4302535.3337252/1‑94 (MQ=60)

                                                                                    CAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGT          <  SRR4302535.2464423/94‑1 (MQ=60)

                                                                                    CAGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGT          <  SRR4302535.1774434/94‑1 (MQ=60)

                                                                                     AGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTT         >  SRR4302535.3803174/1‑94 (MQ=60)

                                                                                     AGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTT         >  SRR4302535.1835427/1‑94 (MQ=60)

                                                                                     AGTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGAT         >  SRR4302535.2786319/1‑94 (MQ=60)

                                                                                      GTAAGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTA        <  SRR4302535.1321513/94‑1 (MQ=60)

                                                                                         AGCGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGAT     <  SRR4302535.1546610/94‑1 (MQ=60)

                                                                                           CGAGCAAACGCGTTTATGCTGTTTGCCCGCTCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTT   <  SRR4302535.3459576/94‑1 (MQ=60)

                                                                                           CGAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTT   <  SRR4302535.1084550/94‑1 (MQ=60)

                                                                                            GAGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTG  >  SRR4302535.1584807/1‑94 (MQ=60)

CAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTG  >  NC_000913/3873640‑3873825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`