Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,875,213 T→C intergenic (‑120/+120) b3698 ← / ← gyrB hypothetical protein/DNA gyrase subunit B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,875,2130TC100.0% 599.2 / NA 191intergenic (‑120/+120)b3698/gyrBhypothetical protein/DNA gyrase subunit B
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (102/89);  total (102/89)

Only 100 of 209 total aligned reads displayed.

ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC  >  NC_000913/3875123‑3875302
                                                                                          |                                                                                         
 cccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGcc                                                                                        >  1:341710/1‑93 (MQ=255)
 cccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGcc                                                                                        >  1:2202835/1‑93 (MQ=255)
   cAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCgg                                                                                      <  2:1222104/93‑1 (MQ=255)
    aaaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGcccgg                                                                                     >  1:998255/1‑90 (MQ=255)
    aaaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGcccgg                                                                                     >  1:156775/1‑90 (MQ=255)
    aaaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGa                                                                                     >  2:4403419/1‑93 (MQ=255)
     aaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGAt                                                                                    >  2:1051461/1‑93 (MQ=255)
      aaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGATg                                                                                   >  1:479792/1‑93 (MQ=255)
       aaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgc                                                                                  >  1:532125/1‑93 (MQ=255)
       aaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCCTTTCTTATAGCTTCTCGCCGGATgc                                                                                  >  1:4401843/1‑93 (MQ=255)
        aGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcg                                                                                 >  1:1977081/1‑93 (MQ=255)
        aGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcg                                                                                 >  2:2590701/1‑93 (MQ=255)
         gTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcgg                                                                                <  2:3627760/93‑1 (MQ=255)
           ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcggcg                                                                              >  2:2281980/1‑93 (MQ=255)
            taGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcggcgg                                                                             >  2:3639632/1‑92 (MQ=255)
               aTTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGaa                                                                          <  2:3740393/93‑1 (MQ=255)
                tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAc                                                                         <  2:3910588/93‑1 (MQ=255)
                tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGAGaat                                                                         >  2:3030052/1‑92 (MQ=255)
                   gCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGcc                                                                      <  1:2866716/93‑1 (MQ=255)
                     gggAAGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCtt                                                                    <  2:635017/93‑1 (MQ=255)
                       gatgacAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTAt                                                                  >  2:3087583/1‑93 (MQ=255)
                        atgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACACCTTATc                                                                 >  1:1024973/1‑93 (MQ=255)
                        atgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGATGCGGCGTGAACGCGCTATc                                                                 >  2:2145610/1‑93 (MQ=255)
                         tgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATcc                                                                <  1:2879760/93‑1 (MQ=255)
                           atAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGCTGCGGCGTGAACGCCTTATCCgg                                                              >  1:2310535/1‑93 (MQ=255)
                           atAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCgg                                                              >  2:1485070/1‑93 (MQ=255)
                               ttGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGAACCCTTATTCGGccca                                                          >  2:247937/1‑91 (MQ=38)
                                tGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                         <  1:3182550/93‑1 (MQ=255)
                                 gCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa                                                        <  2:4542203/93‑1 (MQ=255)
                                   ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGGTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa                                                      <  1:3294223/93‑1 (MQ=255)
                                   ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATTCCGCCTACaaa                                                      >  2:2869791/1‑93 (MQ=38)
                                    gATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGGCTTATCCGGCCTACaaaa                                                     >  2:4439926/1‑93 (MQ=255)
                                     aTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAt                                                    >  2:1361220/1‑93 (MQ=255)
                                      ttGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGGCTACAAAAta                                                   >  1:277816/1‑92 (MQ=255)
                                       tGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAATCa                                                  >  1:3755586/1‑93 (MQ=255)
                                        gCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAt                                                 <  1:1358537/93‑1 (MQ=255)
                                        gCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAt                                                 <  1:1400882/93‑1 (MQ=255)
                                          aGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGa                                               <  2:4467848/93‑1 (MQ=255)
                                           gAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaa                                              <  2:4609258/93‑1 (MQ=255)
                                           gAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaa                                              >  2:541433/1‑93 (MQ=255)
                                           gAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAATCATGaa                                              >  1:2631554/1‑93 (MQ=255)
                                            aaaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaaa                                             >  1:3124489/1‑93 (MQ=255)
                                             aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaaaa                                            <  1:4155367/93‑1 (MQ=255)
                                             aaTAAAAAGGGACGAGATGATCTCAACCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaaaa                                            <  1:1481962/93‑1 (MQ=21)
                                              aTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACTCCTTATACGGCCTACAAAATCATGaaaaa                                           >  2:3834892/1‑92 (MQ=37)
                                              aTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt                                           <  2:1749094/93‑1 (MQ=255)
                                               tAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACAAAATCATGAAAAtt                                          >  2:793566/1‑93 (MQ=255)
                                                  aaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACAAAATCATGAAAAATCaa                                       >  1:1843840/1‑93 (MQ=255)
                                                  aaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACAAAATCATGAAAATTCaa                                       >  2:2914456/1‑93 (MQ=255)
                                                  aaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCaa                                       <  2:3260702/93‑1 (MQ=255)
                                                  aaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCaa                                       >  2:2223796/1‑93 (MQ=255)
                                                    aGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATa                                     >  1:2053401/1‑93 (MQ=255)
                                                        cGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACAtt                                 <  2:1876526/93‑1 (MQ=255)
                                                         ggAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTg                                <  1:1602971/93‑1 (MQ=255)
                                                          gagaTGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATTCGGCCTACAAAATCATGAAAATTCAATAAATTGc                               >  2:3005204/1‑93 (MQ=21)
                                                          gagaTGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGc                               <  1:2692340/93‑1 (MQ=255)
                                                          gagaTGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGc                               <  1:2434289/93‑1 (MQ=255)
                                                            gatgatCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCaa                             <  2:1410834/93‑1 (MQ=255)
                                                              tgatCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAATCATGAAAAGTCAATAAAATGCAAGa                           >  2:2379229/1‑93 (MQ=21)
                                                              tgatCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGa                           >  2:3526916/1‑93 (MQ=255)
                                                              tgatCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGa                           <  2:3070311/93‑1 (MQ=255)
                                                              tgatCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGa                           <  1:1373599/93‑1 (MQ=255)
                                                                atCTCCGCCCTTTTCTTATAGCTTCTCGCCGGCTGCGGGGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGGAAGaat                         >  1:2162397/1‑91 (MQ=21)
                                                                atCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGGGGGGACGCCTTATCCGGCCTACCAAAACCTTAAAAATCCATACATTTCaaaaat                         >  2:244988/1‑89 (MQ=16)
                                                                atCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAtt                         <  2:4341691/93‑1 (MQ=255)
                                                                 tctcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAttt                        <  1:4246181/93‑1 (MQ=255)
                                                                 tctcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCCTATCCGGCCTCCAAAAACATGAAAAATTAATAAATTGCAAGAttt                        >  1:902750/1‑93 (MQ=21)
                                                                  ctcCGCCCTTTTCTTATAGCTTCTCGCCGGGTGCGGCGGGAAAGCCTTTTTCGGGCCACCAAAACCTTAAAAATCAATACAATTCAAGAtttt                       >  2:1727158/1‑93 (MQ=255)
                                                                   tcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTc                      >  1:701483/1‑93 (MQ=255)
                                                                   tcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTc                      <  1:684185/93‑1 (MQ=255)
                                                                   tcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTc                      <  1:4036434/93‑1 (MQ=255)
                                                                    ccGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCg                     <  2:3812371/93‑1 (MQ=255)
                                                                    ccGCCCTTTTCTTATAGCTTCTCGCCGGATGCCGCGCGGACGCCTTATCCGGCCTACAAAATTATGAAAATTCAATATATTTCAAGATTTTCg                     >  2:3022921/1‑93 (MQ=21)
                                                                       cccTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAg                  <  1:984448/93‑1 (MQ=255)
                                                                       cccTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAg                  <  2:3405621/93‑1 (MQ=255)
                                                                        ccTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAgg                 <  1:3929687/93‑1 (MQ=255)
                                                                        ccTTTTCTTATAGCTTCTCGCCGGATGCGGCGGGAACGCCTTATTCCGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTTGTatg                 >  2:1884527/1‑91 (MQ=21)
                                                                         cTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGc                <  2:2934123/93‑1 (MQ=255)
                                                                         cTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGc                <  1:3380749/93‑1 (MQ=255)
                                                                         cTTTTCTTATAGCTTCTCGCCGGATGCGGCGGGAAAGCCCTATTCCGCCCACAAAAAAATGAAAAATTAATACAATTCAAGATTTTTGTAGGc                >  2:4099287/1‑93 (MQ=255)
                                                                          ttttCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGcc               >  1:4553425/1‑93 (MQ=255)
                                                                          ttttCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCCGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTTGTAgggc               >  1:4348195/1‑91 (MQ=21)
                                                                          ttttCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTTTCCGGCCTTCAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAggac               >  2:2717252/1‑91 (MQ=21)
                                                                           tttCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAATCAATACATTGCAAGATTTTCGTAGGCCt              >  1:2017587/1‑93 (MQ=255)
                                                                            ttCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTg             <  1:3958575/93‑1 (MQ=255)
                                                                               ttATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATa          <  1:1821464/93‑1 (MQ=255)
                                                                               ttATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAATTAATACATTTCAAGATTTTTGTAGGCCTGATa          >  2:3544069/1‑93 (MQ=18)
                                                                                tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa         <  1:3480589/93‑1 (MQ=255)
                                                                                tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa         <  2:406556/93‑1 (MQ=255)
                                                                                tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa         <  1:3014717/93‑1 (MQ=255)
                                                                                tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa         <  2:3505788/93‑1 (MQ=255)
                                                                                tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa         >  1:766265/1‑93 (MQ=255)
                                                                                 ataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg        >  1:3658895/1‑93 (MQ=255)
                                                                                  taGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGc       >  1:2234072/1‑93 (MQ=255)
                                                                                  taGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGc       <  1:1182907/93‑1 (MQ=255)
                                                                                     cttctcGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTGCGTAGTCCTGCTAAGCGTa    <  2:4558658/93‑1 (MQ=17)
                                                                                     cttctcGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa    <  2:4316797/93‑1 (MQ=255)
                                                                                      ttctcGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAg   >  1:1880773/1‑93 (MQ=255)
                                                                                      ttctcGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAg   >  1:3786180/1‑93 (MQ=255)
                                                                                      ttctcGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAg   >  1:4364708/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC  >  NC_000913/3875123‑3875302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCA  >  NC_000913/3875120‑3875305
                                                                                             |                                                                                            
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCCCCCTTTTCTTATAGCTTCTC                                                                                              <  SRR4302535.2647226/94‑1 (MQ=60)
 TGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCG                                                                                             >  SRR4302535.1405409/1‑94 (MQ=60)
  GACCCAAAAAGTATAGATTTGCGGTATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCCCGCTTTTCTTATAGCTTCTCGC                                                                                            <  SRR4302535.4320926/94‑1 (MQ=60)
   ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCC                                                                                           >  SRR4302535.344079/1‑94 (MQ=60)
   ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCC                                                                                           >  SRR4302535.2218533/1‑94 (MQ=60)
   ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCC                                                                                           <  SRR4302535.660896/94‑1 (MQ=60)
   ACCAAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCC                                                                                           <  SRR4302535.4045704/94‑1 (MQ=60)
    CCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCG                                                                                          >  SRR4302535.2887703/1‑94 (MQ=60)
       AAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGAT                                                                                       >  SRR4302535.2052700/1‑94 (MQ=60)
        AAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATG                                                                                      >  SRR4302535.3370754/1‑94 (MQ=60)
        AAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATG                                                                                      >  SRR4302535.483161/1‑94 (MQ=60)
        AAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGATG                                                                                      >  SRR4302535.483160/1‑94 (MQ=60)
         AAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGC                                                                                     >  SRR4302535.535848/1‑94 (MQ=60)
         AAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCCTTTCTTATAGCTTCTCGCCGGATGC                                                                                     >  SRR4302535.4431964/1‑94 (MQ=60)
          AAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCG                                                                                    <  SRR4302535.4398988/94‑1 (MQ=60)
          AAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCG                                                                                    >  SRR4302535.1991319/1‑94 (MQ=60)
             TATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCG                                                                                 <  SRR4302535.1657413/94‑1 (MQ=60)
             TATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGATGCGGCG                                                                                 >  SRR4302535.1845300/1‑94 (MQ=60)
             TATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGATGCGGCG                                                                                 >  SRR4302535.1340257/1‑94 (MQ=60)
              ATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGGGGCGT                                                                                >  SRR4302535.3238578/1‑94 (MQ=60)
                  ATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGAC                                                                            >  SRR4302535.3418500/1‑94 (MQ=60)
                  ATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGGTGCGGCGTGcaa                                                                            >  SRR4302535.2872557/1‑91 (MQ=60)
                   TTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACG                                                                           <  SRR4302535.4161050/94‑1 (MQ=60)
                      GCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCT                                                                        <  SRR4302535.2887021/94‑1 (MQ=60)
                        GGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGGTGCGGgggggaacccctt                                                                      >  SRR4302535.2631624/1‑81 (MQ=60)
                        GGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTA                                                                      >  SRR4302535.4316343/1‑94 (MQ=60)
                        GGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTA                                                                      <  SRR4302535.3529650/94‑1 (MQ=60)
                         GGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTAT                                                                     <  SRR4302535.2159145/94‑1 (MQ=60)
                         GGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAACTCCGCCCTTTTCTTATAGCTTCTCGCCGGGTGCGGCGTGgacggcctct                                                                     >  SRR4302535.3327305/1‑84 (MQ=60)
                          GATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACCCCTTTTC                                                                    >  SRR4302535.4267426/1‑94 (MQ=60)
                          GATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACACCTTATC                                                                    >  SRR4302535.1032255/1‑94 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCC                                                                   <  SRR4302535.2488741/94‑1 (MQ=60)
                            TGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCG                                                                  <  SRR4302535.722191/94‑1 (MQ=60)
                            TGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCG                                                                  <  SRR4302535.2900149/94‑1 (MQ=60)
                            TGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCG                                                                  <  SRR4302535.1466492/94‑1 (MQ=60)
                             GATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGCTGCGGCGTGAACGCCTTATCCGG                                                                 >  SRR4302535.2327072/1‑94 (MQ=60)
                             GATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGG                                                                 >  SRR4302535.2326090/1‑94 (MQ=60)
                              ATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATCCGGC                                                                >  SRR4302535.344835/1‑94 (MQ=60)
                                AATTGCGGATTGCAGAAATAAAAATGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCT                                                              <  SRR4302535.3073940/94‑1 (MQ=60)
                                AATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATtccgccc                                                              >  SRR4302535.2704223/1‑87 (MQ=60)
                                 ATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTA                                                             >  SRR4302535.3960033/1‑94 (MQ=60)
                                   TGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA                                                           <  SRR4302535.3204542/94‑1 (MQ=60)
                                      GGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGGTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA                                                        <  SRR4302535.3317125/94‑1 (MQ=60)
                                       GATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAT                                                       <  SRR4302535.2747706/94‑1 (MQ=60)
                                        ATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGGCTACAAAATA                                                      >  SRR4302535.279754/1‑94 (MQ=60)
                                         TTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAATCA                                                     >  SRR4302535.3781563/1‑94 (MQ=60)
                                           GCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATG                                                   <  SRR4302535.1410878/94‑1 (MQ=60)
                                           GCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATG                                                   <  SRR4302535.1368252/94‑1 (MQ=60)
                                            CAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGA                                                  >  SRR4302535.1589965/1‑94 (MQ=60)
                                             AGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAATCATGAA                                                 >  SRR4302535.2650408/1‑94 (MQ=60)
                                              GAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAA                                                >  SRR4302535.3146249/1‑94 (MQ=60)
                                                AATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAT                                              <  SRR4302535.4183814/94‑1 (MQ=60)
                                                AATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAT                                              <  SRR4302535.2027778/94‑1 (MQ=60)
                                                AATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAT                                              <  SRR4302535.111384/94‑1 (MQ=60)
                                                AATAAAAAGGGACGAGATGATCTCAACCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAT                                              <  SRR4302535.1492561/94‑1 (MQ=60)
                                                 ATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATT                                             <  SRR4302535.553224/94‑1 (MQ=60)
                                                   AAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCA                                           <  SRR4302535.992801/94‑1 (MQ=60)
                                                   AAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCA                                           <  SRR4302535.1896298/94‑1 (MQ=60)
                                                    AAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACAAAATCATGAAAAATCAA                                          >  SRR4302535.1857135/1‑94 (MQ=60)
                                                      AAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATA                                        >  SRR4302535.2068191/1‑94 (MQ=60)
                                                       AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC                                       >  SRR4302535.186318/1‑94 (MQ=60)
                                                           CGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTG                                   <  SRR4302535.1389049/94‑1 (MQ=60)
                                                            GGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGC                                  <  SRR4302535.1614535/94‑1 (MQ=60)
                                                             GAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA                                 <  SRR4302535.2711587/94‑1 (MQ=60)
                                                             GAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA                                 <  SRR4302535.2451826/94‑1 (MQ=60)
                                                                 TGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAT                             <  SRR4302535.1383415/94‑1 (MQ=60)
                                                                 TGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAT                             <  SRR4302535.150436/94‑1 (MQ=60)
                                                                  GATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGCTGCGGGGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGGAAGAAT                            >  SRR4302535.2177914/1‑94 (MQ=60)
                                                                  GATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGGCTTATCCTGCCTACAAAATCATGAAAATTCAATACATTACAAGATT                            >  SRR4302535.2177915/1‑94 (MQ=60)
                                                                   ATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAATCAATAAATTGCAAGATTT                           >  SRR4302535.3715780/1‑94 (MQ=60)
                                                                   ATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCCTATCCGGCCTCCAAAAACATGAAAAATTAATAAATTGCAAGATTT                           >  SRR4302535.909144/1‑94 (MQ=60)
                                                                    TCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTT                          <  SRR4302535.4275250/94‑1 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCCTATCCGGgcctcaaaaacaagaaaaatcaaaaaaatttcaaaatttt                         >  SRR4302535.3336363/1‑54 (MQ=41)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTT                         >  SRR4302535.1991768/1‑94 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTC                         >  SRR4302535.706400/1‑94 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAATCAATACATTGCAAGATTTTC                         >  SRR4302535.2914068/1‑94 (MQ=60)
                                                                      TCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCG                        <  SRR4302535.688973/94‑1 (MQ=60)
                                                                      TCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCG                        <  SRR4302535.4064065/94‑1 (MQ=60)
                                                                       CCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGT                       <  SRR4302535.2898304/94‑1 (MQ=60)
                                                                        CGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATCCCGCCTACAAAATCATtaaaaattaataaatttcaagaatttttta                      >  SRR4302535.3362312/1‑64 (MQ=52)
                                                                        CGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTA                      >  SRR4302535.4385041/1‑94 (MQ=60)
                                                                         GCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAG                     <  SRR4302535.1379203/94‑1 (MQ=60)
                                                                         GCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAG                     <  SRR4302535.3922021/94‑1 (MQ=60)
                                                                         GCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAG                     <  SRR4302535.783140/94‑1 (MQ=60)
                                                                         GCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAG                     >  SRR4302535.2246114/1‑94 (MQ=60)
                                                                          CCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGG                    <  SRR4302535.991438/94‑1 (MQ=60)
                                                                           CCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGC                   <  SRR4302535.3956526/94‑1 (MQ=60)
                                                                            CTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCC                  <  SRR4302535.3404252/94‑1 (MQ=60)
                                                                            CTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCC                  >  SRR4302535.331525/1‑94 (MQ=60)
                                                                            CTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCC                  >  SRR4302535.4584536/1‑94 (MQ=60)
                                                                            CTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCCGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTTGTAGGGC                  >  SRR4302535.4377944/1‑94 (MQ=60)
                                                                            CTTTTCTTATAGCTTCTCGCCCGATGCGGCGTGAACGCCTTATCCGGCCTACCAAATCATGAAAAATCAATAAAATGCAAGATTTTCGTAGGCC                  >  SRR4302535.4305023/1‑94 (MQ=58)
                                                                             TTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAATCAATACATTGCAAGATTTTCGTAGGCCT                 >  SRR4302535.2032122/1‑94 (MQ=60)
                                                                              TTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTG                >  SRR4302535.2378991/1‑94 (MQ=60)
                                                                               TTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGA               <  SRR4302535.3985606/94‑1 (MQ=60)
                                                                                 CTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATA             >  SRR4302535.693058/1‑94 (MQ=60)
                                                                                  TTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAA            >  SRR4302535.3804821/1‑94 (MQ=60)
                                                                                  TTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAA            >  SRR4302535.771659/1‑94 (MQ=60)
                                                                                  TTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAA            >  SRR4302535.452496/1‑94 (MQ=60)
                                                                                  TTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAA            <  SRR4302535.1834621/94‑1 (MQ=60)
                                                                                  TTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAA            >  SRR4302535.3172643/1‑94 (MQ=60)
                                                                                   TATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAG           <  SRR4302535.942397/94‑1 (MQ=60)
                                                                                   TATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAG           >  SRR4302535.3684221/1‑94 (MQ=60)
                                                                                   TATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAG           <  SRR4302535.3504768/94‑1 (MQ=60)
                                                                                   TATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAG           <  SRR4302535.3035847/94‑1 (MQ=60)
                                                                                    ATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGC          >  SRR4302535.2249963/1‑94 (MQ=60)
                                                                                     TAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCG         <  SRR4302535.1191355/94‑1 (MQ=60)
                                                                                      AGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGT        >  SRR4302535.3922203/1‑94 (MQ=60)
                                                                                        CTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAG      >  SRR4302535.4394579/1‑94 (MQ=60)
                                                                                        CTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAG      >  SRR4302535.1894328/1‑94 (MQ=60)
                                                                                        CTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAG      >  SRR4302535.3812297/1‑94 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC     <  SRR4302535.4663007/94‑1 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCCGCCTACAAAATCATGAAAAATCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC     >  SRR4302535.2592743/1‑94 (MQ=60)
                                                                                           CTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGC   <  SRR4302535.3178382/94‑1 (MQ=60)
                                                                                            TCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCA  <  SRR4302535.2080076/94‑1 (MQ=60)
                                                                                             |                                                                                            
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCA  >  NC_000913/3875120‑3875305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑