Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,883,686	G→A	V328I (GTT→ATT)	yidC →	60 KD inner‑membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,883,686	0	G	A	100.0%	950.2 / NA	263	V328I (GTT→ATT)	yidC	60 KD inner‑membrane protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (109/154); total (109/154)

Only 100 of 270 total aligned reads displayed.

GGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCGTTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCC  >  NC_000913/3883596‑3883775

ggTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCAtt                                                                                         >  1:4017654/1‑93 (MQ=255)

  tCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGa                                                                                       <  2:3515811/93‑1 (MQ=255)

  tCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGa                                                                                       <  1:2280710/93‑1 (MQ=255)

   cAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGAt                                                                                      <  2:693811/93‑1 (MQ=255)

    aGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGAtt                                                                                     <  1:312212/93‑1 (MQ=255)

    aGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGAtt                                                                                     <  1:2382974/93‑1 (MQ=255)

     gACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTa                                                                                    >  2:195571/1‑93 (MQ=255)

     gACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCACGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTa                                                                                    >  2:4542525/1‑93 (MQ=255)

      aCTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTAc                                                                                   <  2:3214836/93‑1 (MQ=255)

      aCTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTAc                                                                                   <  1:2735167/93‑1 (MQ=255)

      aCTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTAc                                                                                   <  1:2464068/93‑1 (MQ=255)

      aCTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTAc                                                                                   <  1:4548542/93‑1 (MQ=255)

       cTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACg                                                                                  >  2:423854/1‑93 (MQ=255)

       cTGACGCGATGAACAGCACGCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACg                                                                                  <  2:4001521/93‑1 (MQ=255)

        tGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACgg                                                                                 <  1:4059493/93‑1 (MQ=255)

        tGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACgg                                                                                 <  2:1833010/93‑1 (MQ=255)

         ggCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACggt                                                                                <  2:2345202/93‑1 (MQ=255)

         ggCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACggt                                                                                <  1:559914/93‑1 (MQ=255)

          gcgcGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACggtt                                                                               <  1:690720/93‑1 (MQ=255)

          gcgcGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACggtt                                                                               <  2:59686/93‑1 (MQ=255)

          gcgcGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACggtt                                                                               <  1:3040137/93‑1 (MQ=255)

           cgcgATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACggttg                                                                              <  1:3278954/93‑1 (MQ=255)

             cgATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACggttggt                                                                            >  2:3484975/1‑93 (MQ=255)

               aTGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGgttggttg                                                                          <  1:4020610/93‑1 (MQ=255)

               aTGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGgttggttg                                                                          <  2:8075/93‑1 (MQ=255)

                tGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTtgt                                                                         >  2:4049174/1‑93 (MQ=255)

                tGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTtgt                                                                         <  2:2934424/93‑1 (MQ=255)

                tGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGGTGGgtgt                                                                         >  2:3344744/1‑93 (MQ=255)

                 gAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTACGCACCTGGATCTGACCATTGATTACGGTTGGGtgtg                                                                        >  1:309445/1‑93 (MQ=255)

                   aCAGCTCCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGt                                                                      <  1:2669972/93‑1 (MQ=255)

                    cAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGtt                                                                     >  2:2671021/1‑93 (MQ=255)

                    cAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGtt                                                                     <  2:664125/93‑1 (MQ=255)

                    cAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGtt                                                                     >  2:2114874/1‑93 (MQ=255)

                        aCCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCAtc                                                                 >  1:784071/1‑93 (MQ=255)

                         cccTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCAtct                                                                <  2:4304886/93‑1 (MQ=255)

                          ccTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCAtctc                                                               <  1:1116279/93‑1 (MQ=255)

                          ccTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCAtctc                                                               >  2:1925246/1‑93 (MQ=255)

                           cTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCAtctct                                                              >  1:2052080/1‑93 (MQ=255)

                             gtgGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCa                                                            <  1:2157240/93‑1 (MQ=255)

                             gtgGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCa                                                            <  1:3696221/93‑1 (MQ=255)

                                ggTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGcc                                                         <  1:2331043/93‑1 (MQ=255)

                                ggTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGcc                                                         >  1:472786/1‑93 (MQ=255)

                                   tGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCt                                                      <  2:2037781/93‑1 (MQ=255)

                                     gCCCGGCAATCCAGCACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGt                                                    <  1:1790892/93‑1 (MQ=255)

                                      cccGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGtt                                                   <  2:4139134/93‑1 (MQ=255)

                                       ccGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTc                                                  >  2:1111196/1‑93 (MQ=255)

                                         ggAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCaa                                                >  1:100256/1‑93 (MQ=255)

                                          gAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCaaa                                               <  2:3396417/93‑1 (MQ=255)

                                            aaTCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAAct                                             <  1:2581835/93‑1 (MQ=255)

                                            aaTCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAAct                                             <  2:2259531/93‑1 (MQ=255)

                                            aaTCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGAGGTTCATCTCTCAGCCGCTGTTCAAAct                                             >  1:4509344/1‑93 (MQ=255)

                                               ccAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAActgct                                          >  1:3494842/1‑93 (MQ=255)

                                                cAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAActgctg                                         >  1:3408121/1‑93 (MQ=255)

                                                cAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAActgctg                                         <  2:1941240/93‑1 (MQ=255)

                                                  ggACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGaa                                       >  1:1128655/1‑93 (MQ=255)

                                                  ggACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGaa                                       >  1:3733908/1‑93 (MQ=255)

                                                  ggACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGaa                                       >  1:4252683/1‑93 (MQ=255)

                                                   gACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGaaa                                      <  2:3300928/93‑1 (MQ=255)

                                                    aCAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGACAt                                     >  1:295355/1‑93 (MQ=255)

                                                    aCAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAAt                                     >  2:3151037/1‑93 (MQ=255)

                                                    aCAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAAt                                     <  1:911181/93‑1 (MQ=255)

                                                     cAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATg                                    <  2:4287142/93‑1 (MQ=255)

                                                     cAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATg                                    <  1:336465/93‑1 (MQ=255)

                                                     cAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATg                                    <  2:1718688/93‑1 (MQ=255)

                                                      aaaaTGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATgg                                   >  1:428152/1‑93 (MQ=255)

                                                      aaaaTGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATgg                                   <  1:1477848/93‑1 (MQ=255)

                                                          tGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATcc                               <  1:2355381/93‑1 (MQ=255)

                                                           ggCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCa                              <  2:2650709/93‑1 (MQ=255)

                                                           ggCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCa                              <  2:1123514/93‑1 (MQ=255)

                                                            gCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCAt                             <  2:3075427/93‑1 (MQ=255)

                                                              aGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAg                           <  2:3169881/93‑1 (MQ=255)

                                                                cTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCt                         >  1:1309539/1‑93 (MQ=255)

                                                                 tGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCtt                        >  2:516648/1‑93 (MQ=255)

                                                                 tGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCtt                        >  1:4195315/1‑93 (MQ=255)

                                                                  gTTGCTCCTCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCttt                       <  2:3311247/93‑1 (MQ=255)

                                                                  gTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCttt                       >  2:1173039/1‑93 (MQ=255)

                                                                     gCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTtgtg                    >  1:3165111/1‑93 (MQ=255)

                                                                      cTCCGCACCTGGATCTTACCACTGATTACGGGTGGGTGTGGTTCCTCTCTCAGCCGCTGTTCAAACTGCTGAAAAGGATCCATAGCTTtgttg                   >  2:2657706/1‑91 (MQ=255)

                                                                      cTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTgg                   <  1:3212331/93‑1 (MQ=255)

                                                                      cTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTgg                   <  2:3814397/93‑1 (MQ=255)

                                                                      cTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTgg                   <  1:2867980/93‑1 (MQ=255)

                                                                        ccGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGt                 >  2:475403/1‑93 (MQ=255)

                                                                           cACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAAc              <  1:621440/93‑1 (MQ=255)

                                                                           cACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAAc              <  2:165365/93‑1 (MQ=255)

                                                                           cACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAAc              <  2:4392122/93‑1 (MQ=255)

                                                                            cccTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACt             <  1:376902/92‑1 (MQ=255)

                                                                            aCCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACt             <  1:1729333/93‑1 (MQ=255)

                                                                             ccTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTg            >  1:1656518/1‑93 (MQ=255)

                                                                             ccTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTg            <  2:2540947/93‑1 (MQ=255)

                                                                              cTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTgg           <  2:819479/93‑1 (MQ=255)

                                                                               tGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTggg          >  1:1943676/1‑93 (MQ=255)

                                                                                ggATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTTGGTAACTgggg         >  2:3645444/1‑93 (MQ=255)

                                                                                 gATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGc        <  2:3721128/93‑1 (MQ=255)

                                                                                  gtCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCt       <  1:3784565/92‑1 (MQ=255)

                                                                                  aTCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCt       <  2:4457024/93‑1 (MQ=255)

                                                                                  aTCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCt       >  1:1230619/1‑93 (MQ=255)

                                                                                   tCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCtt      >  2:3398727/1‑93 (MQ=255)

                                                                                   tCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGAGTAACTGGGGCtt      >  2:2498115/1‑93 (MQ=255)

                                                                                     tGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTtct    >  2:3671511/1‑93 (MQ=255)

                                                                                      gACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTtctc   >  1:3953648/1‑93 (MQ=255)

GGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCGTTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCC  >  NC_000913/3883596‑3883775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTGGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCGTTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCCATTA  >  NC_000913/3883593‑3883779

CCTGGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCA                                                                                               >  SRR4302535.1669762/1‑94 (MQ=60)

 CTGGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCAT                                                                                              <  SRR4302535.4097938/94‑1 (MQ=60)

  TGGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATT                                                                                             >  SRR4302535.4045137/1‑94 (MQ=60)

  TGGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATT                                                                                             <  SRR4302535.1176752/94‑1 (MQ=60)

   GGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTG                                                                                            >  SRR4302535.2338565/1‑94 (MQ=60)

   GGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTG                                                                                            >  SRR4302535.1773400/1‑94 (MQ=60)

   GGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTG                                                                                            >  SRR4302535.3144963/1‑94 (MQ=60)

     TCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGAT                                                                                          >  SRR4302535.4046234/1‑94 (MQ=60)

     TCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGAT                                                                                          <  SRR4302535.2297003/94‑1 (MQ=60)

      CAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATT                                                                                         >  SRR4302535.4009855/1‑94 (MQ=60)

      CAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATT                                                                                         <  SRR4302535.2512312/94‑1 (MQ=60)

      CAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATT                                                                                         <  SRR4302535.1310941/94‑1 (MQ=60)

       AGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTA                                                                                        <  SRR4302535.2400086/94‑1 (MQ=60)

       AGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTA                                                                                        <  SRR4302535.314375/94‑1 (MQ=60)

       AGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTA                                                                                        <  SRR4302535.3693141/94‑1 (MQ=60)

        GACTGGCGCGATGAACAGCACCCTGTGAGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTAC                                                                                       <  SRR4302535.4413134/94‑1 (MQ=60)

         ACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACG                                                                                      <  SRR4302535.2481835/94‑1 (MQ=60)

         ACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACG                                                                                      <  SRR4302535.4579642/94‑1 (MQ=60)

         ACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACG                                                                                      <  SRR4302535.2754682/94‑1 (MQ=60)

           TGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGT                                                                                    <  SRR4302535.4087277/94‑1 (MQ=60)

            GGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTT                                                                                   <  SRR4302535.563830/94‑1 (MQ=60)

             GCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTG                                                                                  <  SRR4302535.3061429/94‑1 (MQ=60)

             GCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTG                                                                                  <  SRR4302535.695560/94‑1 (MQ=60)

              CGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGG                                                                                 <  SRR4302535.3301727/94‑1 (MQ=60)

                 GATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTG                                                                              <  SRR4302535.2127715/94‑1 (MQ=60)

                  ATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGT                                                                             >  SRR4302535.374497/1‑94 (MQ=60)

                  ATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGT                                                                             <  SRR4302535.4048121/94‑1 (MQ=60)

                   TGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTG                                                                            >  SRR4302535.1517563/1‑94 (MQ=60)

                   TGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTACGCACCTGGATCTGACCATTGATTACGGTTGGGTGTG                                                                            >  SRR4302535.311592/1‑94 (MQ=60)

                   TGAACAGCACCCTGTGGGTGGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTG                                                                            <  SRR4302535.1740370/94‑1 (MQ=60)

                     AACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGT                                                                          <  SRR4302535.3118966/94‑1 (MQ=60)

                      ACAGCTCCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTT                                                                         <  SRR4302535.2689076/94‑1 (MQ=60)

                       CAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTG                                                                        >  SRR4302535.3020559/1‑94 (MQ=60)

                         GCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCAT                                                                      <  SRR4302535.1807402/94‑1 (MQ=60)

                          CACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATC                                                                     >  SRR4302535.1554112/1‑94 (MQ=60)

                          CACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATC                                                                     >  SRR4302535.789571/1‑94 (MQ=60)

                            CCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTC                                                                   <  SRR4302535.139719/94‑1 (MQ=60)

                             CCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCT                                                                  >  SRR4302535.4297430/1‑94 (MQ=60)

                             CCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCT                                                                  >  SRR4302535.1038686/1‑94 (MQ=60)

                             CCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCT                                                                  <  SRR4302535.1124237/94‑1 (MQ=60)

                             CCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCT                                                                  >  SRR4302535.2066854/1‑94 (MQ=60)

                             CCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGGTCATCTCT                                                                  >  SRR4302535.3417098/1‑94 (MQ=60)

                              CTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTC                                                                 >  SRR4302535.3198471/1‑94 (MQ=60)

                                GTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAT                                                               <  SRR4302535.2172747/94‑1 (MQ=60)

                                GTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAG                                                               <  SRR4302535.3721801/94‑1 (MQ=60)

                                GTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAG                                                               <  SRR4302535.2381199/94‑1 (MQ=60)

                                  GGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCC                                                             >  SRR4302535.476095/1‑94 (MQ=60)

                                   GGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCG                                                            <  SRR4302535.2347716/94‑1 (MQ=60)

                                   GGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCG                                                            >  SRR4302535.2641581/1‑94 (MQ=60)

                                    GTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGC                                                           >  SRR4302535.2889764/1‑94 (MQ=60)

                                      TGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTG                                                         <  SRR4302535.1361472/94‑1 (MQ=60)

                                        GCCCGGCAATCCAGCACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTT                                                       <  SRR4302535.1803842/94‑1 (MQ=60)

                                        GCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTT                                                       <  SRR4302535.3046744/94‑1 (MQ=60)

                                           CGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAA                                                    <  SRR4302535.2516814/94‑1 (MQ=60)

                                           CGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAA                                                    >  SRR4302535.100962/1‑94 (MQ=60)

                                            GGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAA                                                   <  SRR4302535.4072175/94‑1 (MQ=60)

                                             GAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAAC                                                  >  SRR4302535.572643/1‑94 (MQ=60)

                                              AAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACT                                                 <  SRR4302535.1961159/94‑1 (MQ=60)

                                              AAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACT                                                 <  SRR4302535.4261996/94‑1 (MQ=60)

                                              AAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGAGGTTCATCTCTCAGCCGCTGTTCAAACT                                                 >  SRR4302535.4540286/1‑94 (MQ=60)

                                               AATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGCTTACGGTTGGTTGTGGTTCATCTCTCtgccgtggattaaactc                                                >  SRR4302535.840127/1‑77 (MQ=60)

                                               AATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTG                                                <  SRR4302535.4697642/94‑1 (MQ=60)

                                               AATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTG                                                <  SRR4302535.2600382/94‑1 (MQ=60)

                                                ATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGC                                               >  SRR4302535.1921042/1‑94 (MQ=60)

                                                 TCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGTATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCT                                              <  SRR4302535.4281321/94‑1 (MQ=60)

                                                 TCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCT                                              >  SRR4302535.3519121/1‑94 (MQ=60)

                                                 TCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCT                                              <  SRR4302535.4574779/94‑1 (MQ=60)

                                                  CCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTG                                             >  SRR4302535.3431844/1‑94 (MQ=60)

                                                  CCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTG                                             <  SRR4302535.3358701/94‑1 (MQ=60)

                                                  CCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTG                                             >  SRR4302535.3469964/1‑94 (MQ=60)

                                                   CAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGA                                            <  SRR4302535.4016843/94‑1 (MQ=60)

                                                    AGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAA                                           <  SRR4302535.2188486/94‑1 (MQ=60)

                                                    AGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAA                                           >  SRR4302535.3881329/1‑94 (MQ=60)

                                                    AGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAA                                           >  SRR4302535.1136715/1‑94 (MQ=60)

                                                    AGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAA                                           >  SRR4302535.3759753/1‑94 (MQ=60)

                                                    AGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAA                                           >  SRR4302535.4281822/1‑94 (MQ=60)

                                                    AGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAA                                           <  SRR4302535.2858444/94‑1 (MQ=60)

                                                      GACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGACAT                                         >  SRR4302535.297415/1‑94 (MQ=60)

                                                      GACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAAT                                         <  SRR4302535.788459/94‑1 (MQ=60)

                                                       ACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATG                                        <  SRR4302535.2735596/94‑1 (MQ=60)

                                                       ACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATG                                        <  SRR4302535.286682/94‑1 (MQ=60)

                                                       ACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATG                                        <  SRR4302535.2377750/94‑1 (MQ=60)

                                                       ACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATG                                        <  SRR4302535.917659/94‑1 (MQ=60)

                                                        CAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGG                                       >  SRR4302535.431130/1‑94 (MQ=60)

                                                        CAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGG                                       <  SRR4302535.3440026/94‑1 (MQ=60)

                                                        CAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGG                                       <  SRR4302535.338792/94‑1 (MQ=60)

                                                        CAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGG                                       <  SRR4302535.2416083/94‑1 (MQ=60)

                                                         AAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGA                                      <  SRR4302535.1488424/94‑1 (MQ=60)

                                                          AAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTcaaacgtat                                     >  SRR4302535.1354524/1‑85 (MQ=60)

                                                           AATGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATC                                    >  SRR4302535.4199563/1‑94 (MQ=60)

                                                             TGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCA                                  <  SRR4302535.1136497/94‑1 (MQ=60)

                                                             TGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCA                                  <  SRR4302535.515794/94‑1 (MQ=60)

                                                             TGGCAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCA                                  <  SRR4302535.2372272/94‑1 (MQ=60)

                                                                CAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAG                               <  SRR4302535.3249017/94‑1 (MQ=60)

                                                                CAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAG                               >  SRR4302535.565306/1‑94 (MQ=60)

                                                                CAGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAG                               <  SRR4302535.505389/94‑1 (MQ=60)

                                                                 AGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCTCTGTTCAAACTGCTGAAATGGATCCATAGC                              <  SRR4302535.3805116/94‑1 (MQ=60)

                                                                 AGCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGC                              >  SRR4302535.122074/1‑94 (MQ=60)

                                                                  GCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCT                             >  SRR4302535.1318898/1‑94 (MQ=60)

                                                                  GCTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCT                             >  SRR4302535.2407046/1‑94 (MQ=60)

                                                                   CTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTT                            >  SRR4302535.4224023/1‑94 (MQ=60)

                                                                   CTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTT                            >  SRR4302535.946825/1‑94 (MQ=60)

                                                                   CTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTT                            >  SRR4302535.378033/1‑94 (MQ=60)

                                                                   CTGTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTT                            >  SRR4302535.3227340/1‑94 (MQ=60)

                                                                     GTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTG                          >  SRR4302535.2197134/1‑94 (MQ=60)

                                                                     GTTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTG                          >  SRR4302535.2349685/1‑94 (MQ=60)

                                                                      TTGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGT                         >  SRR4302535.1135263/1‑94 (MQ=60)

                                                                       TGCTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTG                        >  SRR4302535.3187053/1‑94 (MQ=60)

                                                                         CTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGG                      <  SRR4302535.388563/94‑1 (MQ=60)

                                                                         CTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGG                      >  SRR4302535.2339069/1‑94 (MQ=60)

                                                                         CTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGG                      >  SRR4302535.4575114/1‑94 (MQ=60)

                                                                         CTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGG                      <  SRR4302535.2888292/94‑1 (MQ=60)

                                                                         CTCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGG                      <  SRR4302535.3234578/94‑1 (MQ=60)

                                                                          TCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGT                     <  SRR4302535.2741614/94‑1 (MQ=60)

                                                                          TCCGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGT                     >  SRR4302535.3106224/1‑94 (MQ=60)

                                                                            CGCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAA                   <  SRR4302535.3163094/94‑1 (MQ=60)

                                                                             GCACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAAC                  <  SRR4302535.306337/94‑1 (MQ=60)

                                                                              CACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACT                 <  SRR4302535.625755/94‑1 (MQ=60)

                                                                               CCCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTG                <  SRR4302535.379516/94‑1 (MQ=60)

                                                                               ACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTG                <  SRR4302535.1741832/94‑1 (MQ=60)

                                                                               ACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTG                >  SRR4302535.2644225/1‑94 (MQ=60)

                                                                               ACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTG                >  SRR4302535.1668501/1‑94 (MQ=60)

                                                                               ACCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTG                <  SRR4302535.3738855/94‑1 (MQ=60)

                                                                                CCTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGG               <  SRR4302535.1192158/94‑1 (MQ=60)

                                                                                 CTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGG              <  SRR4302535.818349/94‑1 (MQ=60)

                                                                                 CTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGG              <  SRR4302535.4057198/94‑1 (MQ=60)

                                                                                 CTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGG              <  SRR4302535.4129716/94‑1 (MQ=60)

                                                                                 CTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGG              <  SRR4302535.2048365/94‑1 (MQ=60)

                                                                                 CTGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGG              >  SRR4302535.1957673/1‑94 (MQ=60)

                                                                                  TGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGG             >  SRR4302535.3390332/1‑94 (MQ=60)

                                                                                  TGGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGG             >  SRR4302535.3334/1‑94 (MQ=60)

                                                                                   GGATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGC            >  SRR4302535.379015/1‑94 (MQ=60)

                                                                                    GATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCT           >  SRR4302535.1239415/1‑94 (MQ=60)

                                                                                    GATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCT           >  SRR4302535.72830/1‑94 (MQ=60)

                                                                                    GATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCT           <  SRR4302535.1760199/94‑1 (MQ=60)

                                                                                     GTCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTT          <  SRR4302535.3810675/94‑1 (MQ=60)

                                                                                     ATCTGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTT          >  SRR4302535.867336/1‑94 (MQ=60)

                                                                                        TGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTC       <  SRR4302535.670535/94‑1 (MQ=60)

                                                                                        TGACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTC       >  SRR4302535.3980638/1‑94 (MQ=60)

                                                                                         GACCATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCC      >  SRR4302535.4524673/1‑94 (MQ=60)

                                                                                            CATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCCATT   >  SRR4302535.3784007/1‑94 (MQ=60)

                                                                                            CATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCCATT   <  SRR4302535.4426225/94‑1 (MQ=60)

                                                                                            CATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCCATT   >  SRR4302535.4170293/1‑94 (MQ=60)

                                                                                             ATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCCATTA  >  SRR4302535.197200/1‑94 (MQ=60)

                                                                                             ATTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCCATTA  >  SRR4302535.1122752/1‑94 (MQ=60)

CCTGGTCAGACTGGCGCGATGAACAGCACCCTGTGGGTTGGCCCGGAAATCCAGGACAAAATGGCAGCTGTTGCTCCGCACCTGGATCTGACCGTTGATTACGGTTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAACTGCTGAAATGGATCCATAGCTTTGTGGGTAACTGGGGCTTCTCCATTA  >  NC_000913/3883593‑3883779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`