Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,888,869 G→A A335A (GCG→GCA)  tnaB → low affinity tryptophan permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,888,8690GA100.0% 743.1 / NA 207A335A (GCG→GCA) tnaBlow affinity tryptophan permease
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (108/99);  total (108/99)

Only 100 of 230 total aligned reads displayed.

GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC  >  NC_000913/3888779‑3888958
                                                                                          |                                                                                         
gttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCatt                                                                                         <  2:3386122/93‑1 (MQ=255)
 ttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattg                                                                                        <  2:3928618/93‑1 (MQ=255)
 ttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGGTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTCCattg                                                                                        >  2:4179181/1‑93 (MQ=255)
  tgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattgt                                                                                       <  1:1142130/93‑1 (MQ=255)
   gttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattgtt                                                                                      <  1:2150284/93‑1 (MQ=255)
    ttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCAttgttg                                                                                     >  1:329754/1‑93 (MQ=255)
     tCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATtgttgt                                                                                    <  1:1643888/93‑1 (MQ=255)
      cGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTa                                                                                   <  1:3329284/93‑1 (MQ=255)
        aTTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc                                                                                 >  1:1028316/1‑93 (MQ=255)
        aTTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc                                                                                 >  2:2961537/1‑93 (MQ=255)
         ttATCTGGCGGGCCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCt                                                                                >  1:1480847/1‑93 (MQ=255)
         ttATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCt                                                                                <  2:2828911/93‑1 (MQ=255)
         ttATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCt                                                                                >  2:2343086/1‑93 (MQ=255)
          tATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTg                                                                               >  1:4611164/1‑93 (MQ=255)
           aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGa                                                                              <  1:2476834/93‑1 (MQ=255)
            tCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGAt                                                                             <  1:253668/93‑1 (MQ=255)
              tGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCt                                                                           <  1:625504/93‑1 (MQ=255)
                   gACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATTTGATCTTCCCg                                                                      >  2:266529/1‑93 (MQ=255)
                   gACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCg                                                                      <  2:784692/93‑1 (MQ=255)
                     ccTGTTTAAGATTGATAGCTCCCACGGCTGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGaa                                                                    <  1:2681163/93‑1 (MQ=255)
                      cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc                                                                   >  2:356877/1‑93 (MQ=255)
                      cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc                                                                   <  2:1517090/93‑1 (MQ=255)
                       tGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACg                                                                  <  1:4259304/93‑1 (MQ=255)
                         tttAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGc                                                                >  2:1123843/1‑93 (MQ=255)
                          ttAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCt                                                               >  1:2725359/1‑93 (MQ=255)
                          ttAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCt                                                               <  2:1904392/93‑1 (MQ=255)
                           tAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCAAACGGCtt                                                              <  2:4554982/93‑1 (MQ=255)
                             aGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCttta                                                            <  2:274040/93‑1 (MQ=255)
                              gATTGATACCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttat                                                           <  2:1015120/93‑1 (MQ=255)
                              gATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttat                                                           <  1:3120987/93‑1 (MQ=255)
                              aaTTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttat                                                           <  1:2108350/92‑1 (MQ=255)
                               aTTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttatt                                                          <  2:4036446/93‑1 (MQ=255)
                                ttGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttattt                                                         >  1:725899/1‑93 (MQ=255)
                                 tGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttattta                                                        <  2:3600852/93‑1 (MQ=255)
                                   aTAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACg                                                      <  1:4006833/93‑1 (MQ=255)
                                   aTAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACg                                                      <  2:3999917/93‑1 (MQ=255)
                                    tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg                                                     <  2:1547576/93‑1 (MQ=255)
                                    tAACTCCCACGGCGGGCGTTTCAAAACCGCGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg                                                     >  1:3945523/1‑93 (MQ=255)
                                     aaCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACggg                                                    >  1:4664963/1‑93 (MQ=255)
                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   <  2:535094/93‑1 (MQ=255)
                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   <  2:2918055/93‑1 (MQ=255)
                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   <  1:4329992/93‑1 (MQ=255)
                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   >  2:3640084/1‑93 (MQ=255)
                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   >  2:439837/1‑93 (MQ=255)
                                       cTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGAt                                                  >  2:3328519/1‑93 (MQ=255)
                                        tCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATc                                                 >  1:520441/1‑93 (MQ=255)
                                        tCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATc                                                 >  2:1820330/1‑93 (MQ=255)
                                         cccACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcg                                                <  1:4483693/93‑1 (MQ=255)
                                           cACGGCGGGCGTTTCAAAACCGTGCTGTTACCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggc                                              <  1:750689/93‑1 (MQ=255)
                                            aCGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggcg                                             >  1:2434110/1‑93 (MQ=255)
                                              ggcgggcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGt                                           <  1:356109/93‑1 (MQ=255)
                                                cgggcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGc                                         <  1:2082654/93‑1 (MQ=255)
                                                   gcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCgg                                      >  2:4544434/1‑93 (MQ=255)
                                                   gcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCgg                                      >  2:3833260/1‑93 (MQ=255)
                                                   gcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCgg                                      <  2:2119446/93‑1 (MQ=255)
                                                    cgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCggg                                     <  1:3849242/93‑1 (MQ=255)
                                                     gTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGc                                    <  2:1159218/93‑1 (MQ=255)
                                                     gTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGc                                    >  2:1699786/1‑93 (MQ=255)
                                                      tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt                                   >  1:689612/1‑93 (MQ=255)
                                                      tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt                                   >  2:195990/1‑93 (MQ=255)
                                                      tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt                                   >  1:2329308/1‑93 (MQ=255)
                                                      tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt                                   >  2:3675768/1‑93 (MQ=255)
                                                         cAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgtg                                <  2:2572303/93‑1 (MQ=255)
                                                         cAAAACCGTGCTGTTAACCTTCCTGCCACCTACATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgtg                                >  2:3755458/1‑93 (MQ=255)
                                                             aCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGcc                            >  1:1315403/1‑93 (MQ=255)
                                                             aCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGcc                            >  2:2268488/1‑93 (MQ=255)
                                                               cGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGccac                          >  1:3810742/1‑93 (MQ=255)
                                                                gTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGccacc                         >  1:3232944/1‑93 (MQ=255)
                                                                  gCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCAt                       >  1:831305/1‑93 (MQ=255)
                                                                   cTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATc                      <  2:2406374/93‑1 (MQ=255)
                                                                   cTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATc                      <  2:34850/93‑1 (MQ=255)
                                                                    tGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCt                     <  1:3533023/93‑1 (MQ=255)
                                                                    tGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCt                     <  2:1236743/93‑1 (MQ=255)
                                                                    tGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCt                     >  2:4288064/1‑93 (MQ=255)
                                                                     gTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTg                    >  2:687029/1‑93 (MQ=255)
                                                                     gTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTg                    >  1:270038/1‑93 (MQ=255)
                                                                      ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg                   >  1:2810709/1‑93 (MQ=255)
                                                                      ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg                   <  1:902612/93‑1 (MQ=255)
                                                                      ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg                   <  2:2682696/93‑1 (MQ=255)
                                                                      ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg                   <  1:4157150/93‑1 (MQ=255)
                                                                          ccTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCCCCATCTGGGCgg               >  2:2875601/1‑93 (MQ=255)
                                                                           cTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGt              >  1:1213087/1‑93 (MQ=255)
                                                                            ttCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTc             >  2:3160344/1‑93 (MQ=255)
                                                                             tCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTGATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCa            <  2:4619794/93‑1 (MQ=255)
                                                                             tCCTGCCACATGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGGGCCACCATCTAGGCGGTCa            >  2:1577990/1‑93 (MQ=255)
                                                                              ccTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCat           <  2:2489024/93‑1 (MQ=255)
                                                                               cTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatt          >  1:4574527/1‑93 (MQ=255)
                                                                               cTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatt          >  2:776123/1‑93 (MQ=255)
                                                                                tGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatta         <  1:1052173/93‑1 (MQ=255)
                                                                                tGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatta         >  1:4045534/1‑93 (MQ=255)
                                                                                 gCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCattat        >  1:3175167/1‑93 (MQ=255)
                                                                                 gCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCattat        <  1:1973280/93‑1 (MQ=255)
                                                                                    aCCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGGCACCATCTGGGCGGTCATTATTcc     >  2:1308704/1‑93 (MQ=255)
                                                                                    aCCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGGCATTATTcc     >  2:861331/1‑93 (MQ=255)
                                                                                     ccTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTccc    >  1:2203649/1‑93 (MQ=255)
                                                                                     ccTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTccc    <  1:1726769/93‑1 (MQ=255)
                                                                                      cTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCg   >  2:2085707/1‑93 (MQ=255)
                                                                                      cTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCg   >  1:4066901/1‑93 (MQ=255)
                                                                                      cTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCg   >  1:3613078/1‑93 (MQ=255)
                                                                                       tGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGc  >  1:1579052/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC  >  NC_000913/3888779‑3888958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGGGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGTG  >  NC_000913/3888776‑3888962
                                                                                             |                                                                                             
GGGGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCA                                                                                               >  SRR4302535.2641802/1‑94 (MQ=60)
  GGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATT                                                                                             <  SRR4302535.1846071/94‑1 (MQ=60)
  GGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATT                                                                                             <  SRR4302535.319352/94‑1 (MQ=60)
   GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTG                                                                                            <  SRR4302535.1189935/94‑1 (MQ=60)
     TGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTT                                                                                          <  SRR4302535.4082224/94‑1 (MQ=60)
     TGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTT                                                                                          <  SRR4302535.1150273/94‑1 (MQ=60)
     TGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTT                                                                                          <  SRR4302535.3350757/94‑1 (MQ=60)
     TGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTT                                                                                          >  SRR4302535.740322/1‑94 (MQ=60)
      GTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTG                                                                                         >  SRR4302535.1627126/1‑94 (MQ=60)
      GTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTG                                                                                         <  SRR4302535.2165747/94‑1 (MQ=60)
      GTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTG                                                                                         >  SRR4302535.332041/1‑94 (MQ=60)
        TCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTA                                                                                       <  SRR4302535.1655770/94‑1 (MQ=60)
         CGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTAT                                                                                      <  SRR4302535.3352446/94‑1 (MQ=60)
          GATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATC                                                                                     <  SRR4302535.3850401/94‑1 (MQ=60)
          GATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATC                                                                                     >  SRR4302535.1035616/1‑94 (MQ=60)
           ATTATCTGGCGGGCCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCT                                                                                    >  SRR4302535.1491439/1‑94 (MQ=60)
           ATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCT                                                                                    >  SRR4302535.3636632/1‑94 (MQ=60)
           ATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCT                                                                                    >  SRR4302535.2131395/1‑94 (MQ=60)
           ATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCT                                                                                    >  SRR4302535.4062759/1‑94 (MQ=60)
            TTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTG                                                                                   >  SRR4302535.4642490/1‑94 (MQ=60)
            TTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTG                                                                                   >  SRR4302535.2122715/1‑94 (MQ=60)
            TTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTG                                                                                   >  SRR4302535.758980/1‑94 (MQ=60)
              ATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGAT                                                                                 <  SRR4302535.2494698/94‑1 (MQ=60)
              ATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGAT                                                                                 <  SRR4302535.4592295/94‑1 (MQ=60)
               TCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATC                                                                                <  SRR4302535.255420/94‑1 (MQ=60)
                 TGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTT                                                                              <  SRR4302535.629853/94‑1 (MQ=60)
                   GCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCC                                                                            <  SRR4302535.611768/94‑1 (MQ=60)
                    CGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCC                                                                           <  SRR4302535.4009706/94‑1 (MQ=60)
                        CCTGTTTAAGATTGATAGCTCCCACGGCTGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAC                                                                       <  SRR4302535.2700344/94‑1 (MQ=60)
                        CCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTTTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAC                                                                       <  SRR4302535.2065132/94‑1 (MQ=60)
                         CTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACG                                                                      <  SRR4302535.2725390/94‑1 (MQ=60)
                         CTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACG                                                                      <  SRR4302535.2712320/94‑1 (MQ=60)
                          TGTTTAAGATTGATCACTCCCACGGCGGGCCTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGTTCTTCCCGAACGG                                                                     <  SRR4302535.2554118/94‑1 (MQ=60)
                          TGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGG                                                                     >  SRR4302535.2095187/1‑94 (MQ=60)
                          TGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGG                                                                     <  SRR4302535.4288478/94‑1 (MQ=60)
                          TGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGG                                                                     <  SRR4302535.4483363/94‑1 (MQ=60)
                          TGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGG                                                                     >  SRR4302535.902438/1‑94 (MQ=60)
                           GTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGCACGGC                                                                    >  SRR4302535.2193406/1‑94 (MQ=60)
                           GTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGC                                                                    >  SRR4302535.34766/1‑94 (MQ=60)
                            TTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCT                                                                   >  SRR4302535.2744826/1‑94 (MQ=60)
                              TAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTT                                                                 <  SRR4302535.3818527/94‑1 (MQ=60)
                                AGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTAT                                                               <  SRR4302535.3950349/94‑1 (MQ=60)
                                AGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTAT                                                               <  SRR4302535.1051421/94‑1 (MQ=60)
                                 GATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATT                                                              <  SRR4302535.3142721/94‑1 (MQ=60)
                                 GATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATT                                                              <  SRR4302535.496079/94‑1 (MQ=60)
                                 AATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATT                                                              <  SRR4302535.2123556/94‑1 (MQ=60)
                                  ATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTT                                                             >  SRR4302535.730995/1‑94 (MQ=60)
                                  ATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTT                                                             <  SRR4302535.4561934/94‑1 (MQ=60)
                                   TTGATAACTCCCACGGCGGGCGTTTTAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTG                                                            >  SRR4302535.4233852/1‑94 (MQ=60)
                                    TGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTAG                                                           >  SRR4302535.1604931/1‑94 (MQ=60)
                                      ATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGG                                                         <  SRR4302535.4034248/94‑1 (MQ=60)
                                      ATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGG                                                         <  SRR4302535.4120964/94‑1 (MQ=60)
                                      ATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGG                                                         >  SRR4302535.4663323/1‑94 (MQ=60)
                                      ATAACTCCCACGGCGGGCGTTTCAAAACCGCGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGG                                                         >  SRR4302535.3972467/1‑94 (MQ=60)
                                       TAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGG                                                        >  SRR4302535.4696501/1‑94 (MQ=60)
                                        AACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGA                                                       <  SRR4302535.2739517/94‑1 (MQ=60)
                                         ACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGAT                                                      <  SRR4302535.4359602/94‑1 (MQ=60)
                                          CTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATC                                                     >  SRR4302535.524079/1‑94 (MQ=60)
                                          CTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGATGTATCTGATCTTCCCCAACGACTTTATTTAATGGATC                                                     >  SRR4302535.2739058/1‑94 (MQ=60)
                                           TCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCG                                                    <  SRR4302535.4295096/94‑1 (MQ=60)
                                            CCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGG                                                   <  SRR4302535.4514468/94‑1 (MQ=60)
                                            CCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGG                                                   >  SRR4302535.3056220/1‑94 (MQ=60)
                                            CCCACGGCGGGCGTTTCAAAACCGTGCTATTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGG                                                   >  SRR4302535.3202205/1‑94 (MQ=60)
                                             CCACGGCGGGCGTTTCAAAACCGTGCTGTTAAACTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTAAGGGATCGGC                                                  >  SRR4302535.317694/1‑94 (MQ=60)
                                              CACGGCGGGCGTTTCAAAACCGTGCTGTTACCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCG                                                 <  SRR4302535.755980/94‑1 (MQ=60)
                                              CACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCG                                                 >  SRR4302535.2451645/1‑94 (MQ=60)
                                                CGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGT                                               >  SRR4302535.1314847/1‑94 (MQ=60)
                                                 GGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTG                                              <  SRR4302535.358569/94‑1 (MQ=60)
                                                   CGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCC                                            <  SRR4302535.2097656/94‑1 (MQ=60)
                                                     GGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGG                                          >  SRR4302535.4233421/1‑94 (MQ=60)
                                                       CGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGC                                        <  SRR4302535.3875732/94‑1 (MQ=60)
                                                        GTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCT                                       >  SRR4302535.694445/1‑94 (MQ=60)
                                                        GTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCT                                       >  SRR4302535.2345969/1‑94 (MQ=60)
                                                              AAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGC                                 >  SRR4302535.2247172/1‑94 (MQ=60)
                                                               AACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCC                                >  SRR4302535.1324800/1‑94 (MQ=60)
                                                                 CCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCAC                              >  SRR4302535.3837035/1‑94 (MQ=60)
                                                                  CGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGgcaca                             >  SRR4302535.716444/1‑89 (MQ=60)
                                                                  CGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCGCC                             <  SRR4302535.3540735/94‑1 (MQ=60)
                                                                  CGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACC                             >  SRR4302535.3255361/1‑94 (MQ=60)
                                                                   GTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCA                            >  SRR4302535.1940008/1‑94 (MQ=60)
                                                                   GTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCA                            >  SRR4302535.2541527/1‑94 (MQ=60)
                                                                    TGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCAT                           >  SRR4302535.837130/1‑94 (MQ=60)
                                                                    TGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTCCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCAT                           <  SRR4302535.3267624/94‑1 (MQ=60)
                                                                      CTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCT                         >  SRR4302535.2628151/1‑94 (MQ=60)
                                                                      CTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCT                         >  SRR4302535.657233/1‑94 (MQ=60)
                                                                       TGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCCTCTG                        >  SRR4302535.1099781/1‑94 (MQ=60)
                                                                       TGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTG                        >  SRR4302535.271916/1‑94 (MQ=60)
                                                                       TGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTG                        <  SRR4302535.3557552/94‑1 (MQ=60)
                                                                        GTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGG                       >  SRR4302535.2830689/1‑94 (MQ=60)
                                                                         TTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGG                      <  SRR4302535.4622827/94‑1 (MQ=60)
                                                                         TTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGG                      <  SRR4302535.2745271/94‑1 (MQ=60)
                                                                         TTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGG                      <  SRR4302535.4185606/94‑1 (MQ=60)
                                                                         TTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGG                      <  SRR4302535.909005/94‑1 (MQ=60)
                                                                           AACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCG                    >  SRR4302535.4037790/1‑94 (MQ=60)
                                                                             CCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGT                  >  SRR4302535.1221788/1‑94 (MQ=60)
                                                                              CTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTC                 >  SRR4302535.1511699/1‑94 (MQ=60)
                                                                              CTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTC                 <  SRR4302535.1004852/94‑1 (MQ=60)
                                                                                TCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCAT               <  SRR4302535.3665357/94‑1 (MQ=60)
                                                                                 CCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATT              >  SRR4302535.3197923/1‑94 (MQ=60)
                                                                                 CCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATT              <  SRR4302535.2417072/94‑1 (MQ=60)
                                                                                 CCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATT              >  SRR4302535.4605707/1‑94 (MQ=60)
                                                                                  CTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTA             >  SRR4302535.4073228/1‑94 (MQ=60)
                                                                                  CTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTA             <  SRR4302535.3573788/94‑1 (MQ=60)
                                                                                   TGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTAT            >  SRR4302535.3197140/1‑94 (MQ=60)
                                                                                   TGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTAT            <  SRR4302535.2329386/94‑1 (MQ=60)
                                                                                   TGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTAT            <  SRR4302535.1059657/94‑1 (MQ=60)
                                                                                    GCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATT           <  SRR4302535.1987491/94‑1 (MQ=60)
                                                                                     CCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTC          >  SRR4302535.916490/1‑94 (MQ=60)
                                                                                     CCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTC          >  SRR4302535.748701/1‑94 (MQ=60)
                                                                                     CCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTC          >  SRR4302535.1681184/1‑94 (MQ=60)
                                                                                       ACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCC        >  SRR4302535.2219350/1‑94 (MQ=60)
                                                                                       ACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGGGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCC        >  SRR4302535.2463323/1‑94 (MQ=60)
                                                                                        CCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCG       <  SRR4302535.1739253/94‑1 (MQ=60)
                                                                                        CCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCG       >  SRR4302535.3638131/1‑94 (MQ=60)
                                                                                        CCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCG       >  SRR4302535.1486771/1‑94 (MQ=60)
                                                                                        CCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCG       <  SRR4302535.1297864/94‑1 (MQ=60)
                                                                                        CCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCG       >  SRR4302535.4094730/1‑94 (MQ=60)
                                                                                         CTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC      >  SRR4302535.1590450/1‑94 (MQ=60)
                                                                                         CTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC      >  SRR4302535.54407/1‑94 (MQ=60)
                                                                                           GCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAG    >  SRR4302535.906227/1‑94 (MQ=60)
                                                                                            CATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGT   <  SRR4302535.558262/94‑1 (MQ=60)
                                                                                            CATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGT   <  SRR4302535.410769/94‑1 (MQ=60)
                                                                                            CATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGT   <  SRR4302535.408813/94‑1 (MQ=60)
                                                                                             ATTGTTGTATCTGATCTTCCCGAACGTCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGTG  <  SRR4302535.117187/94‑1 (MQ=60)
                                                                                             |                                                                                             
GGGGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGTG  >  NC_000913/3888776‑3888962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑