Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,902,722 |
G→A |
G168G (GGC→GGT) |
bglF ← |
PTS system beta‑glucosides‑specific enzyme IIABC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,902,722 | 0 | G | A | 99.1%
| 767.3
/ NA
| 218 | G168G (GGC→GGT) | bglF | PTS system beta‑glucosides‑specific enzyme IIABC component |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (104/112); total (104/114) |
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 229 total aligned reads displayed.
CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC > NC_000913/3902632‑3902811
|
cgcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTaccacc < 1:1347054/93‑1 (MQ=255)
gcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAccaccg > 1:3751524/1‑93 (MQ=255)
cATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGa < 1:4319067/93‑1 (MQ=255)
cATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGa < 2:3056421/93‑1 (MQ=255)
tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg > 1:4112883/1‑93 (MQ=255)
tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg > 1:1972008/1‑93 (MQ=255)
tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg > 1:809130/1‑93 (MQ=255)
tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg > 1:3064290/1‑93 (MQ=255)
ccGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGc < 2:4302853/93‑1 (MQ=255)
gCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAGCACCGAAGCGt > 1:4674789/1‑93 (MQ=255)
gCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGt > 2:1985707/1‑93 (MQ=255)
gCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGt > 1:1699766/1‑93 (MQ=255)
cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt < 1:982760/93‑1 (MQ=255)
cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt > 1:2003557/1‑93 (MQ=255)
tttttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGttt < 1:3416536/93‑1 (MQ=255)
ttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTccc < 1:4463380/93‑1 (MQ=255)
gCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcg > 2:3355072/1‑93 (MQ=255)
cccGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcgc > 1:192806/1‑93 (MQ=255)
gTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCggg > 1:1196026/1‑92 (MQ=255)
gTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGgt < 2:3816321/93‑1 (MQ=255)
gAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATcc > 2:2978535/1‑93 (MQ=255)
aaaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATccc > 2:1039430/1‑93 (MQ=255)
aaaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATccc > 2:1618697/1‑93 (MQ=255)
aaaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATccc < 1:2466983/93‑1 (MQ=255)
aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa < 1:409494/93‑1 (MQ=255)
aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg < 1:3966457/93‑1 (MQ=255)
aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg > 1:1058326/1‑93 (MQ=255)
aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg < 2:42195/93‑1 (MQ=255)
cAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGa > 1:1611271/1‑93 (MQ=255)
cAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGa < 2:3119140/93‑1 (MQ=255)
cAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGa > 1:4179022/1‑93 (MQ=255)
aGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAACTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAt < 1:2508020/93‑1 (MQ=255)
aGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAt < 2:2468544/93‑1 (MQ=255)
ttAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGga > 1:987771/1‑93 (MQ=255)
ttAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGga > 1:4219854/1‑93 (MQ=255)
tAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa < 2:4103820/93‑1 (MQ=255)
tAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa > 2:399777/1‑93 (MQ=255)
aaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaag < 1:1855076/93‑1 (MQ=255)
aaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaag > 1:1630028/1‑93 (MQ=255)
aaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaag > 2:3736885/1‑93 (MQ=255)
aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaaga > 1:252478/1‑93 (MQ=255)
aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaaga > 1:3433330/1‑93 (MQ=255)
tGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa < 2:2560558/93‑1 (MQ=255)
tGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa < 1:3143199/93‑1 (MQ=255)
aggATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa < 1:2356723/92‑1 (MQ=255)
aggATGCACAAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa < 2:567194/92‑1 (MQ=255)
ggATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAc < 1:2870412/93‑1 (MQ=255)
tGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaa > 1:1761355/1‑93 (MQ=255)
gCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaa < 1:391999/93‑1 (MQ=255)
gCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaa < 1:1287488/93‑1 (MQ=255)
cACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaaa < 2:1266322/93‑1 (MQ=255)
cACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaaa < 2:3312027/93‑1 (MQ=255)
cTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACa > 1:1305810/1‑93 (MQ=255)
cTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACa > 2:869816/1‑93 (MQ=255)
cTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACa > 1:2318265/1‑93 (MQ=255)
tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa < 1:565919/93‑1 (MQ=255)
aaCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAg > 1:147901/1‑93 (MQ=255)
cGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGc < 1:2695280/93‑1 (MQ=255)
caccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAc < 2:1090591/93‑1 (MQ=255)
caccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAc < 2:371375/93‑1 (MQ=255)
accaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACt > 2:3238805/1‑93 (MQ=255)
accaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACt < 2:726490/93‑1 (MQ=255)
ccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTg > 1:4354650/1‑93 (MQ=255)
aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc > 1:3609591/1‑93 (MQ=255)
aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc < 2:2103340/93‑1 (MQ=255)
tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc < 2:3189692/93‑1 (MQ=255)
tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc > 2:2648951/1‑93 (MQ=255)
tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc > 2:4465137/1‑93 (MQ=255)
tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc < 2:2523376/93‑1 (MQ=255)
aCCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTg > 2:960109/1‑93 (MQ=255)
ccATGGCAGTAAATGGATTGCCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGa < 2:4592552/93‑1 (MQ=255)
ccATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGa < 1:2624087/93‑1 (MQ=255)
ccATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGa < 1:3717111/93‑1 (MQ=255)
cATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGaa < 2:3910323/93‑1 (MQ=255)
aTGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAt > 2:4487267/1‑93 (MQ=255)
aTGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAt > 1:1725252/1‑93 (MQ=255)
aGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt < 2:2778685/93‑1 (MQ=255)
aGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt < 2:1723453/93‑1 (MQ=255)
aGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt > 2:1334162/1‑93 (MQ=255)
gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt < 1:4513938/93‑1 (MQ=255)
gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt > 1:2570979/1‑93 (MQ=255)
gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt > 2:4660454/1‑93 (MQ=255)
gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt > 1:679480/1‑93 (MQ=255)
aaTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaaa < 1:1423586/93‑1 (MQ=255)
aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt < 2:1154394/93‑1 (MQ=255)
aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt > 1:1165358/1‑93 (MQ=255)
aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt > 2:2543356/1‑93 (MQ=255)
ggATTACCACCGAAGCGTTTCCCGGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa < 2:3884165/93‑1 (MQ=255)
ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa < 2:14930/93‑1 (MQ=255)
ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa < 1:3093122/93‑1 (MQ=255)
ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa < 2:4260296/93‑1 (MQ=255)
gATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAg < 2:242095/93‑1 (MQ=255)
gATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAg < 1:2133628/93‑1 (MQ=255)
aTTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGt > 1:3367519/1‑93 (MQ=255)
aTTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGt < 2:520253/93‑1 (MQ=255)
aTTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGt < 1:1034363/93‑1 (MQ=255)
ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa < 2:3477320/93‑1 (MQ=255)
ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa < 2:2352218/93‑1 (MQ=255)
tACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAc < 1:3178461/93‑1 (MQ=255)
tACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAc > 2:1877544/1‑93 (MQ=255)
|
CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC > NC_000913/3902632‑3902811
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT > NC_000913/3902629‑3902814
|
CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCACTCACCATGGCAGTAAATGTATTACCA > SRR4302535.2447723/1‑94 (MQ=60)
AGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCAC < SRR4302535.823795/94‑1 (MQ=60)
AGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCAC < SRR4302535.1206698/94‑1 (MQ=60)
GCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACC < SRR4302535.1225331/94‑1 (MQ=60)
CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCG > SRR4302535.2002695/1‑94 (MQ=60)
CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCG > SRR4302535.3777490/1‑94 (MQ=60)
CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCG > SRR4302535.1735917/1‑94 (MQ=60)
CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCG < SRR4302535.1356671/94‑1 (MQ=60)
CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA < SRR4302535.1627731/94‑1 (MQ=60)
CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA < SRR4302535.4348614/94‑1 (MQ=60)
CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA < SRR4302535.565337/94‑1 (MQ=60)
ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG > SRR4302535.3085709/1‑94 (MQ=60)
ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG > SRR4302535.2127545/1‑94 (MQ=60)
ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG > SRR4302535.1986210/1‑94 (MQ=60)
ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG > SRR4302535.814792/1‑94 (MQ=60)
ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG > SRR4302535.4141037/1‑94 (MQ=60)
TCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGC < SRR4302535.1051820/94‑1 (MQ=60)
CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAGCACCGAAGCGT > SRR4302535.4706349/1‑94 (MQ=60)
CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGT > SRR4302535.1712048/1‑94 (MQ=60)
CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGT > SRR4302535.4223520/1‑94 (MQ=60)
GCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTT > SRR4302535.2017992/1‑94 (MQ=60)
CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT < SRR4302535.989742/94‑1 (MQ=60)
TTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTC > SRR4302535.1472127/1‑94 (MQ=60)
TTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTC < SRR4302535.3440304/94‑1 (MQ=60)
TTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTC < SRR4302535.3775775/94‑1 (MQ=60)
TTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCC < SRR4302535.4142445/94‑1 (MQ=60)
TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC < SRR4302535.992355/94‑1 (MQ=60)
TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC < SRR4302535.4493994/94‑1 (MQ=60)
TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCA > SRR4302535.4101176/1‑94 (MQ=60)
GCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGC > SRR4302535.194133/1‑94 (MQ=60)
CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGG > SRR4302535.1204594/1‑94 (MQ=60)
TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGT > SRR4302535.3181603/1‑94 (MQ=60)
CTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAT < SRR4302535.2464919/94‑1 (MQ=60)
CGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCC > SRR4302535.2950721/1‑94 (MQ=60)
CGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCC > SRR4302535.3444574/1‑94 (MQ=60)
AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA < SRR4302535.2484765/94‑1 (MQ=60)
AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA > SRR4302535.2234427/1‑94 (MQ=60)
AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG < SRR4302535.3507915/94‑1 (MQ=60)
AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG > SRR4302535.1065859/1‑94 (MQ=60)
AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG < SRR4302535.412371/94‑1 (MQ=60)
AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG < SRR4302535.2337489/94‑1 (MQ=60)
AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG < SRR4302535.3993550/94‑1 (MQ=60)
GCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGA > SRR4302535.1622887/1‑94 (MQ=60)
GCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGA > SRR4302535.4207625/1‑94 (MQ=60)
CAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGGGTATCCCAGGAT > SRR4302535.1879894/1‑94 (MQ=60)
CAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATCGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT < SRR4302535.3409922/94‑1 (MQ=60)
AGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAACTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT < SRR4302535.2526100/94‑1 (MQ=60)
AGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT > SRR4302535.772989/1‑94 (MQ=60)
GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA < SRR4302535.4134843/94‑1 (MQ=60)
GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA > SRR4302535.2680452/1‑94 (MQ=60)
TCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTAT < SRR4302535.1124920/94‑1 (MQ=60)
TCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTAT > SRR4302535.2914779/1‑94 (MQ=60)
CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC < SRR4302535.1211917/94‑1 (MQ=60)
AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG > SRR4302535.1001325/1‑94 (MQ=60)
AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG < SRR4302535.918808/94‑1 (MQ=60)
GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG > SRR4302535.4372425/1‑94 (MQ=60)
GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGCATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG < SRR4302535.2545776/94‑1 (MQ=60)
ATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGA > SRR4302535.4248727/1‑94 (MQ=60)
ATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGA > SRR4302535.994789/1‑94 (MQ=60)
TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG > SRR4302535.1641799/1‑94 (MQ=60)
AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA > SRR4302535.254218/1‑94 (MQ=60)
AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA < SRR4302535.1868442/94‑1 (MQ=60)
AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA > SRR4302535.3457187/1‑94 (MQ=60)
ATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAA < SRR4302535.180429/94‑1 (MQ=60)
TGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAC > SRR4302535.3777492/1‑94 (MQ=60)
TGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAC < SRR4302535.3165065/94‑1 (MQ=60)
AGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAC < SRR4302535.2373624/94‑1 (MQ=60)
GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC < SRR4302535.1619600/94‑1 (MQ=60)
GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC < SRR4302535.2890749/94‑1 (MQ=60)
GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC < SRR4302535.3983334/94‑1 (MQ=60)
GATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCA > SRR4302535.4275553/1‑94 (MQ=60)
ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA > SRR4302535.1699632/1‑94 (MQ=60)
ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA > SRR4302535.1774111/1‑94 (MQ=60)
ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA > SRR4302535.1200895/1‑94 (MQ=60)
TGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAA > SRR4302535.238677/1‑94 (MQ=60)
GCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAA < SRR4302535.394733/94‑1 (MQ=60)
GCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAA < SRR4302535.1296664/94‑1 (MQ=60)
CACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAAC > SRR4302535.2609851/1‑94 (MQ=60)
ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA > SRR4302535.1315131/1‑94 (MQ=60)
ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA > SRR4302535.2334858/1‑94 (MQ=60)
CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA > SRR4302535.1412225/1‑94 (MQ=60)
TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG < SRR4302535.569881/94‑1 (MQ=60)
TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG > SRR4302535.148934/1‑94 (MQ=60)
AACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGG < SRR4302535.4141647/94‑1 (MQ=60)
CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA < SRR4302535.2714545/94‑1 (MQ=60)
CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGGTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA < SRR4302535.1276673/94‑1 (MQ=60)
CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCAAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA > SRR4302535.175194/1‑94 (MQ=60)
CGCGCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA < SRR4302535.3350847/94‑1 (MQ=60)
CTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGTAAGAACCAACACAAGGCATC > SRR4302535.3148111/1‑94 (MQ=60)
CTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATC < SRR4302535.1795694/94‑1 (MQ=60)
TCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCA < SRR4302535.2615715/94‑1 (MQ=60)
ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG > SRR4302535.4384457/1‑94 (MQ=60)
CCAATCACCATGGGAGTAAATGGATTACCAGCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGG < SRR4302535.1417988/94‑1 (MQ=60)
CAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGTAAGAACCAAAACAAGGCATCACTGGC > SRR4302535.4399469/1‑94 (MQ=60)
CAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGC > SRR4302535.3634627/1‑94 (MQ=60)
CAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGC < SRR4302535.387922/94‑1 (MQ=60)
CAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGC < SRR4302535.2518477/94‑1 (MQ=60)
CACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTG > SRR4302535.1674532/1‑94 (MQ=60)
CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA < SRR4302535.3742865/94‑1 (MQ=60)
CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA < SRR4302535.2642894/94‑1 (MQ=60)
CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT > SRR4302535.2850817/1‑94 (MQ=60)
CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT < SRR4302535.3666117/94‑1 (MQ=60)
CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT < SRR4302535.1329088/94‑1 (MQ=60)
CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT > SRR4302535.1737730/1‑94 (MQ=60)
ATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATA < SRR4302535.4713474/94‑1 (MQ=60)
TGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAA < SRR4302535.4525238/94‑1 (MQ=60)
GGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAA > SRR4302535.205318/1‑94 (MQ=60)
CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT > SRR4302535.823597/1‑94 (MQ=60)
CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT < SRR4302535.3382951/94‑1 (MQ=60)
CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT < SRR4302535.570672/94‑1 (MQ=60)
CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATAGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT < SRR4302535.4376095/94‑1 (MQ=60)
AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT > SRR4302535.684237/1‑94 (MQ=60)
AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT > SRR4302535.2589462/1‑94 (MQ=60)
GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTA < SRR4302535.4544892/94‑1 (MQ=60)
AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGTAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT < SRR4302535.2536837/94‑1 (MQ=60)
AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT < SRR4302535.1433751/94‑1 (MQ=60)
AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT > SRR4302535.1173682/1‑94 (MQ=60)
TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA < SRR4302535.1979691/94‑1 (MQ=60)
GGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAG < SRR4302535.3114663/94‑1 (MQ=60)
GGATTACCACCGAAGCGTTTACCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAG > SRR4302535.1306112/1‑94 (MQ=60)
GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT < SRR4302535.2149005/94‑1 (MQ=60)
GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT > SRR4302535.4600246/1‑94 (MQ=60)
GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT > SRR4302535.3390950/1‑94 (MQ=60)
GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT < SRR4302535.3518508/94‑1 (MQ=60)
ATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA < SRR4302535.1041710/94‑1 (MQ=60)
TTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC > SRR4302535.3105376/1‑94 (MQ=60)
TACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC < SRR4302535.3200443/94‑1 (MQ=60)
CACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT < SRR4302535.3949411/94‑1 (MQ=60)
|
CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT > NC_000913/3902629‑3902814
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
