Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,902,722	G→A	G168G (GGC→GGT)	bglF ←	PTS system beta‑glucosides‑specific enzyme IIABC component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,902,722	0	G	A	99.4%	1262.8 / ‑5.3	358	G168G (GGC→GGT)	bglF	PTS system beta‑glucosides‑specific enzyme IIABC component
Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (184/172); total (186/172)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 382 total aligned reads displayed.

CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC  >  NC_000913/3902632‑3902811

 gcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTaccacca                                                                                        >  1:707094/1‑92 (MQ=255)

 gcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAccaccg                                                                                        >  1:5198645/1‑93 (MQ=255)

 gcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAccaccg                                                                                        <  1:1734263/93‑1 (MQ=255)

 gcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAccaccg                                                                                        >  2:2258008/1‑93 (MQ=255)

    tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg                                                                                     >  2:3305917/1‑93 (MQ=255)

     ccGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGc                                                                                    <  2:2440692/93‑1 (MQ=255)

        cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                 <  1:1630699/93‑1 (MQ=255)

        cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                 <  2:1224931/93‑1 (MQ=255)

         tttttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGttt                                                                                <  2:3447511/93‑1 (MQ=255)

          ttttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTc                                                                               <  1:792544/93‑1 (MQ=255)

           tttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTcc                                                                              <  1:2266192/93‑1 (MQ=255)

             tGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTcccc                                                                            >  1:6034047/1‑93 (MQ=255)

              gCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTccccc                                                                           >  2:2028765/1‑92 (MQ=255)

              gCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcg                                                                           >  2:692467/1‑93 (MQ=255)

              gCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcg                                                                           <  2:666599/93‑1 (MQ=255)

               cccGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcgc                                                                          <  1:102894/93‑1 (MQ=255)

                 cGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCgg                                                                        <  2:6744430/93‑1 (MQ=255)

                 cGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCgg                                                                        >  1:3545892/1‑93 (MQ=255)

                  gTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGgt                                                                       >  2:2558671/1‑93 (MQ=255)

                      tcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAt                                                                   >  2:3598033/1‑93 (MQ=255)

                      tcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAt                                                                   >  2:5297496/1‑93 (MQ=255)

                        gAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATcc                                                                 <  1:6363634/93‑1 (MQ=255)

                        gAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATcc                                                                 >  1:4047974/1‑93 (MQ=255)

                         aaaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATccc                                                                >  1:7883068/1‑93 (MQ=255)

                         aaaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATccc                                                                >  2:7293664/1‑93 (MQ=255)

                         aaaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATccc                                                                <  1:450649/93‑1 (MQ=255)

                          aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa                                                               >  2:3117565/1‑93 (MQ=255)

                          aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa                                                               >  2:6431087/1‑93 (MQ=255)

                           aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg                                                              <  1:6965450/93‑1 (MQ=255)

                           aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg                                                              <  2:4728934/93‑1 (MQ=255)

                             cAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGa                                                            <  1:6816987/93‑1 (MQ=255)

                              aGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAt                                                           >  2:6629020/1‑93 (MQ=255)

                              aGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAt                                                           <  1:2907650/93‑1 (MQ=255)

                               gTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAtt                                                          >  2:6513296/1‑93 (MQ=255)

                                tCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTa                                                         >  1:535883/1‑93 (MQ=255)

                                     aTTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCggg                                                    >  2:5181393/1‑93 (MQ=255)

                                      ttAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGga                                                   >  1:4274958/1‑93 (MQ=255)

                                      ttAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGga                                                   >  2:3221510/1‑93 (MQ=255)

                                        aaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaag                                                 >  1:3882660/1‑93 (MQ=255)

                                          tGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa                                               >  1:6180023/1‑93 (MQ=255)

                                          tGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa                                               >  1:5399162/1‑93 (MQ=255)

                                          tGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa                                               <  2:2761996/93‑1 (MQ=255)

                                           ggATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAc                                              <  1:2776039/93‑1 (MQ=255)

                                            gATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAcc                                             >  2:1787551/1‑93 (MQ=255)

                                             aTGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCa                                            >  1:2172597/1‑93 (MQ=255)

                                               gCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaa                                          >  1:2507569/1‑93 (MQ=255)

                                                 aCTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAAc                                        >  2:4658883/1‑93 (MQ=255)

                                                  cTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACa                                       >  1:2350374/1‑93 (MQ=255)

                                                  cTAACGCTCCACCAATCACCATGGCAGTAAATGGATCACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACa                                       >  1:2417000/1‑93 (MQ=255)

                                                   tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                      >  1:4965365/1‑93 (MQ=255)

                                                   tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                      >  1:6479080/1‑93 (MQ=255)

                                                   tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                      <  2:1437561/93‑1 (MQ=255)

                                                    aaCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAg                                     >  1:70221/1‑93 (MQ=255)

                                                     aCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAgg                                    <  1:3725763/93‑1 (MQ=255)

                                                     aCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAACCCAGGATTATCGGGAAGAACCAAAACAAgg                                    <  1:3693097/93‑1 (MQ=255)

                                                      cGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGc                                   <  2:4463722/93‑1 (MQ=255)

                                                      cGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGc                                   <  1:525315/93‑1 (MQ=255)

                                                       gCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCa                                  >  1:56381/1‑93 (MQ=255)

                                                        cTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAt                                 >  1:5901020/1‑93 (MQ=255)

                                                        cTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAt                                 <  1:4099981/93‑1 (MQ=255)

                                                        cTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAt                                 <  2:1099977/93‑1 (MQ=255)

                                                        cTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGAAt                                 <  2:7017484/93‑1 (MQ=255)

                                                          ccaccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCa                               <  1:1349533/93‑1 (MQ=255)

                                                           caccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAGCAAGGCATCAc                              <  1:7420350/93‑1 (MQ=255)

                                                           caccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAc                              >  2:42815/1‑93 (MQ=255)

                                                            accaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACt                             >  2:846858/1‑93 (MQ=255)

                                                            accaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCACAGGATTATCGGGAAGAACCAAAACAAGGCATCACt                             >  2:4595766/1‑93 (MQ=255)

                                                              caATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTgg                           <  2:4328784/93‑1 (MQ=255)

                                                              caATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTgg                           >  1:628442/1‑93 (MQ=255)

                                                               aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc                          >  2:1906311/1‑93 (MQ=255)

                                                                aTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcg                         >  2:6204465/1‑93 (MQ=255)

                                                                 tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc                        >  1:7666575/1‑93 (MQ=255)

                                                                  cACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCt                       <  2:6034046/93‑1 (MQ=255)

                                                                  cACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCt                       >  1:2025741/1‑93 (MQ=255)

                                                                   aCCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTg                      <  2:7874143/93‑1 (MQ=255)

                                                                   aCCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTg                      >  1:4609171/1‑93 (MQ=255)

                                                                    ccATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGa                     <  1:1896887/93‑1 (MQ=255)

                                                                     cATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGaa                    <  1:7295104/93‑1 (MQ=255)

                                                                      aTGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAt                   >  1:2702344/1‑93 (MQ=255)

                                                                       tGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATa                  <  2:3869147/93‑1 (MQ=255)

                                                                       tGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGAGCTGAATa                  >  2:2948/1‑93 (MQ=255)

                                                                           aGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt              >  1:929939/1‑93 (MQ=255)

                                                                              aaaTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaa           <  1:3237010/93‑1 (MQ=255)

                                                                               aaTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaaa          >  2:5001449/1‑93 (MQ=255)

                                                                                aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt         >  2:4872471/1‑93 (MQ=255)

                                                                                aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt         <  1:7568940/93‑1 (MQ=255)

                                                                                aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt         >  2:6856618/1‑93 (MQ=255)

                                                                                aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt         >  1:2399835/1‑93 (MQ=255)

                                                                                 tGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAATGGCGCTGAATAAAATTAAATa        <  1:1392917/93‑1 (MQ=255)

                                                                                  tgATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACAAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa       <  2:5837293/92‑1 (MQ=255)

                                                                                  ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa       >  2:5440915/1‑93 (MQ=255)

                                                                                  ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa       >  1:671061/1‑93 (MQ=255)

                                                                                  ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa       >  2:4128824/1‑93 (MQ=255)

                                                                                  ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa       <  2:7641623/93‑1 (MQ=255)

                                                                                     ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa    >  1:308284/1‑93 (MQ=255)

                                                                                     ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa    <  1:4621150/93‑1 (MQ=255)

                                                                                     ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa    >  2:1610467/1‑93 (MQ=255)

                                                                                     ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa    <  1:116489/93‑1 (MQ=255)

                                                                                      tACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAc   <  2:7141953/93‑1 (MQ=255)

                                                                                       accaccGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAcc  <  2:7473670/93‑1 (MQ=255)

CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC  >  NC_000913/3902632‑3902811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 211 total aligned reads displayed.

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTT  >  NC_000913/3902629‑3902815

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                               <  SRR4302543.4592166/94‑1 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                               <  SRR4302543.7370144/94‑1 (MQ=60)

 AGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCAC                                                                                              >  SRR4302543.703629/1‑94 (MQ=60)

  GCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACC                                                                                             <  SRR4302543.3620267/94‑1 (MQ=60)

   CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCG                                                                                            >  SRR4302543.5245517/1‑94 (MQ=60)

    GCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGA                                                                                           >  SRR4302543.2944931/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                          <  SRR4302543.954562/94‑1 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                          >  SRR4302543.2758190/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                          >  SRR4302543.6076777/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGGCAGAATTAATGGATGCACTAACGCTCCACCAATCACGATGGCAGTAAATGGATTACCACCAAA                                                                                          >  SRR4302543.2515012/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCGCTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                         >  SRR4302543.1128461/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                         >  SRR4302543.4119880/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                         <  SRR4302543.2226337/94‑1 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                         >  SRR4302543.707037/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                         >  SRR4302543.7966951/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                         >  SRR4302543.5622670/1‑94 (MQ=60)

       TCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGC                                                                                        >  SRR4302543.7412782/1‑94 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                    <  SRR4302543.2750424/94‑1 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                    >  SRR4302543.6851756/1‑94 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                    <  SRR4302543.1645235/94‑1 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                    <  SRR4302543.1620906/94‑1 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                    <  SRR4302543.7472353/94‑1 (MQ=60)

             TTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCC                                                                                  <  SRR4302543.799508/94‑1 (MQ=60)

              TTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCC                                                                                 <  SRR4302543.2286879/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                                <  SRR4302543.5380272/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                                >  SRR4302543.6090732/1‑94 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                                >  SRR4302543.7330550/1‑94 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                                <  SRR4302543.7154334/94‑1 (MQ=60)

                TGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCG                                                                               >  SRR4302543.1805503/1‑94 (MQ=60)

                 GCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGC                                                                              <  SRR4302543.2558427/94‑1 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                             <  SRR4302543.103845/94‑1 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                             >  SRR4302543.4494871/1‑94 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                             >  SRR4302543.856595/1‑94 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                             >  SRR4302543.2161497/1‑94 (MQ=60)

                   CCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGG                                                                            >  SRR4302543.3577375/1‑94 (MQ=60)

                   CCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGG                                                                            >  SRR4302543.7158311/1‑94 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGT                                                                           >  SRR4302543.5013217/1‑94 (MQ=60)

                     GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTG                                                                          <  SRR4302543.1438492/94‑1 (MQ=60)

                     GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTG                                                                          <  SRR4302543.7128824/94‑1 (MQ=60)

                     GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTG                                                                          >  SRR4302543.2145279/1‑94 (MQ=60)

                       TCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTA                                                                        <  SRR4302543.2430600/94‑1 (MQ=60)

                        CTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAT                                                                       >  SRR4302543.6704256/1‑94 (MQ=60)

                          CGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCC                                                                     >  SRR4302543.4084196/1‑94 (MQ=60)

                          CGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCC                                                                     <  SRR4302543.6216567/94‑1 (MQ=60)

                          CGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCC                                                                     >  SRR4302543.622693/1‑94 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                    >  SRR4302543.4109898/1‑94 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                    <  SRR4302543.5444928/94‑1 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                    <  SRR4302543.5444926/94‑1 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                    >  SRR4302543.7957242/1‑94 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                    <  SRR4302543.6423474/94‑1 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCTGCGGTGTATCCCA                                                                   <  SRR4302543.7048918/94‑1 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                   >  SRR4302543.1977712/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                   <  SRR4302543.454859/94‑1 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                   <  SRR4302543.460080/94‑1 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                   >  SRR4302543.6528644/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                   >  SRR4302543.1977711/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGCAAATGGAGTACCGCCGAAGCGCTTCCCCGCGGTGCATCCCA                                                                   >  SRR4302543.7108608/1‑94 (MQ=60)

                             AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG                                                                  <  SRR4302543.4038415/94‑1 (MQ=60)

                             AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG                                                                  >  SRR4302543.3710795/1‑94 (MQ=60)

                              AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                 <  SRR4302543.7030999/94‑1 (MQ=60)

                                CAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT                                                               >  SRR4302543.1659912/1‑94 (MQ=60)

                                CAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT                                                               <  SRR4302543.6881343/94‑1 (MQ=60)

                                CAGTCAGAATTAAGGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT                                                               <  SRR4302543.6881344/94‑1 (MQ=60)

                                 AGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT                                                              <  SRR4302543.2934084/94‑1 (MQ=60)

                                 AGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT                                                              >  SRR4302543.2507324/1‑94 (MQ=60)

                                  GTCAGAATTAGTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                             >  SRR4302543.2354167/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                             >  SRR4302543.2920204/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                             >  SRR4302543.540849/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                             >  SRR4302543.585403/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                             >  SRR4302543.7661270/1‑94 (MQ=60)

                                    CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC                                                           <  SRR4302543.6268257/94‑1 (MQ=60)

                                    CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC                                                           >  SRR4302543.3882745/1‑94 (MQ=60)

                                    CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC                                                           <  SRR4302543.4586458/94‑1 (MQ=60)

                                     AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG                                                          >  SRR4302543.6626324/1‑94 (MQ=60)

                                     AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG                                                          >  SRR4302543.4796196/1‑94 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                         <  SRR4302543.3240775/94‑1 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                         <  SRR4302543.6863161/94‑1 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                         <  SRR4302543.4183632/94‑1 (MQ=60)

                                       AATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGG                                                        <  SRR4302543.1650681/94‑1 (MQ=60)

                                       AATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGG                                                        <  SRR4302543.5210082/94‑1 (MQ=60)

                                        ATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGA                                                       >  SRR4302543.4313811/1‑94 (MQ=60)

                                        ATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACAACCGCAGCGTTTCCCCGCGGTGTATCCCAGGATTACCGGGA                                                       >  SRR4302543.6398138/1‑94 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                      <  SRR4302543.1371259/94‑1 (MQ=60)

                                         ATAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                      <  SRR4302543.1371258/94‑1 (MQ=60)

                                          TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                     <  SRR4302543.7711952/94‑1 (MQ=60)

                                          TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                     >  SRR4302543.3916939/1‑94 (MQ=60)

                                          TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                     >  SRR4302543.4287872/1‑94 (MQ=60)

                                          TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                     <  SRR4302543.2931373/94‑1 (MQ=60)

                                          TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                     >  SRR4302543.4622959/1‑94 (MQ=60)

                                           AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA                                                    <  SRR4302543.5424120/94‑1 (MQ=60)

                                            ATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAA                                                   >  SRR4302543.5448259/1‑94 (MQ=60)

                                            ATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAA                                                   <  SRR4302543.2570035/94‑1 (MQ=60)

                                            ATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAA                                                   >  SRR4302543.6238441/1‑94 (MQ=60)

                                              GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC                                                 <  SRR4302543.5677279/94‑1 (MQ=60)

                                              GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC                                                 <  SRR4302543.2801315/94‑1 (MQ=60)

                                              GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC                                                 >  SRR4302543.6101803/1‑94 (MQ=60)

                                               GATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCA                                                >  SRR4302543.2192060/1‑94 (MQ=60)

                                                ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA                                               >  SRR4302543.1748530/1‑94 (MQ=60)

                                                ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA                                               <  SRR4302543.3349527/94‑1 (MQ=60)

                                                ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA                                               <  SRR4302543.1192685/94‑1 (MQ=60)

                                                ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA                                               >  SRR4302543.6321468/1‑94 (MQ=60)

                                                 TGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAA                                              >  SRR4302543.2530337/1‑94 (MQ=60)

                                                 TGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAA                                              <  SRR4302543.5260683/94‑1 (MQ=60)

                                                 TGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAA                                              <  SRR4302543.2831610/94‑1 (MQ=60)

                                                   CACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAAC                                            >  SRR4302543.2127145/1‑94 (MQ=60)

                                                   CACTAACGCTCCACCAATCACCATGGCAGGAAATGGATTATCACCGAAGCGTTTACCCGCGGAGTATCCCAGGATTATCGGGCAGAACCAAAAC                                            >  SRR4302543.4278400/1‑94 (MQ=60)

                                                    ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA                                           >  SRR4302543.2371687/1‑94 (MQ=60)

                                                    ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATCACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA                                           >  SRR4302543.2438829/1‑94 (MQ=60)

                                                     CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA                                          >  SRR4302543.6540128/1‑94 (MQ=60)

                                                     CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA                                          >  SRR4302543.7054759/1‑94 (MQ=60)

                                                     CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA                                          >  SRR4302543.5010562/1‑94 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                         <  SRR4302543.1045452/94‑1 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                         >  SRR4302543.70860/1‑94 (MQ=60)

                                                       AACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGG                                        >  SRR4302543.1599070/1‑94 (MQ=60)

                                                       AACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGG                                        <  SRR4302543.1375971/94‑1 (MQ=60)

                                                       AACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGC                                        >  SRR4302543.2201349/1‑94 (MQ=60)

                                                        ACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGC                                       >  SRR4302543.6531792/1‑94 (MQ=60)

                                                        ACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGC                                       <  SRR4302543.2207409/94‑1 (MQ=60)

                                                        ACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGC                                       <  SRR4302543.3396508/94‑1 (MQ=60)

                                                        ACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGC                                       <  SRR4302543.3758525/94‑1 (MQ=60)

                                                        ACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGC                                       <  SRR4302543.3758524/94‑1 (MQ=60)

                                                        ACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAACCCAGGATTATCGGGAAGAACCAAAACAAGGC                                       <  SRR4302543.3725558/94‑1 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                      <  SRR4302543.530171/94‑1 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                      <  SRR4302543.2303678/94‑1 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                      <  SRR4302543.6039782/94‑1 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                      >  SRR4302543.56879/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                     >  SRR4302543.3236820/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                     >  SRR4302543.5954852/1‑94 (MQ=60)

                                                           CTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATC                                    >  SRR4302543.3743437/1‑94 (MQ=60)

                                                           CTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATC                                    >  SRR4302543.3743436/1‑94 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                  >  SRR4302543.809795/1‑94 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                  >  SRR4302543.4100039/1‑94 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                  >  SRR4302543.3676579/1‑94 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                  <  SRR4302543.1361608/94‑1 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                  <  SRR4302543.1361607/94‑1 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                  <  SRR4302543.5140009/94‑1 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAGCAAGGCATCACT                                 <  SRR4302543.7491524/94‑1 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                 >  SRR4302543.5852557/1‑94 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                 <  SRR4302543.7814710/94‑1 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                 <  SRR4302543.4820548/94‑1 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                 >  SRR4302543.5337342/1‑94 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                 <  SRR4302543.674110/94‑1 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                 >  SRR4302543.2484457/1‑94 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                 <  SRR4302543.6388881/94‑1 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                                <  SRR4302543.4898380/94‑1 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                                >  SRR4302543.3195315/1‑94 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                                >  SRR4302543.6310634/1‑94 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                                <  SRR4302543.1980174/94‑1 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                                >  SRR4302543.3819698/1‑94 (MQ=60)

                                                                  AATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCG                             <  SRR4302543.5330679/94‑1 (MQ=60)

                                                                   ATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCTTGTTGTACCAAAACAAGGCATCACTGcgga                            >  SRR4302543.6788349/1‑90 (MQ=60)

                                                                   ATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGC                            <  SRR4302543.931633/94‑1 (MQ=60)

                                                                   ATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGC                            >  SRR4302543.7739234/1‑94 (MQ=60)

                                                                   ATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGC                            >  SRR4302543.6513059/1‑94 (MQ=60)

                                                                    TCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCT                           >  SRR4302543.2043944/1‑94 (MQ=60)

                                                                    TCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCT                           >  SRR4302543.7572355/1‑94 (MQ=60)

                                                                     CACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTG                          >  SRR4302543.4651046/1‑94 (MQ=60)

                                                                     CACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTG                          <  SRR4302543.7605150/94‑1 (MQ=60)

                                                                     CACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTG                          >  SRR4302543.4651042/1‑94 (MQ=60)

                                                                      ACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGA                         <  SRR4302543.7800381/94‑1 (MQ=60)

                                                                       CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA                        <  SRR4302543.1913950/94‑1 (MQ=60)

                                                                       CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA                        <  SRR4302543.3900787/94‑1 (MQ=60)

                                                                       CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA                        <  SRR4302543.1239124/94‑1 (MQ=60)

                                                                        CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT                       <  SRR4302543.603640/94‑1 (MQ=60)

                                                                        CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT                       >  SRR4302543.7736965/1‑94 (MQ=60)

                                                                        CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT                       >  SRR4302543.2726857/1‑94 (MQ=60)

                                                                        CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT                       <  SRR4302543.7365496/94‑1 (MQ=60)

                                                                        CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT                       >  SRR4302543.3071180/1‑94 (MQ=60)

                                                                         ATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATA                      <  SRR4302543.1905828/94‑1 (MQ=60)

                                                                         ATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATA                      >  SRR4302543.6941996/1‑94 (MQ=60)

                                                                         ATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATA                      >  SRR4302543.5695351/1‑94 (MQ=60)

                                                                         ATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATA                      >  SRR4302543.2396571/1‑94 (MQ=60)

                                                                          TGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAA                     <  SRR4302543.5298359/94‑1 (MQ=60)

                                                                          TGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAA                     <  SRR4302543.2426093/94‑1 (MQ=60)

                                                                             CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT                  >  SRR4302543.938067/1‑94 (MQ=60)

                                                                             CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT                  >  SRR4302543.2411711/1‑94 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                 <  SRR4302543.3282581/94‑1 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                 >  SRR4302543.7974240/1‑94 (MQ=60)

                                                                                TAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAA               <  SRR4302543.5263267/94‑1 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA              >  SRR4302543.2681932/1‑94 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA              <  SRR4302543.3266289/94‑1 (MQ=60)

                                                                                  AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT             >  SRR4302543.2421537/1‑94 (MQ=60)

                                                                                   ATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATA            <  SRR4302543.7640952/94‑1 (MQ=60)

                                                                                   ATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATA            <  SRR4302543.4374461/94‑1 (MQ=60)

                                                                                   ATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATA            <  SRR4302543.2397122/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA           >  SRR4302543.677234/1‑94 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA           <  SRR4302543.4422368/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAATGGCGCTGAATAAAATTAAATAA           <  SRR4302543.1405459/94‑1 (MQ=60)

                                                                                      GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT         <  SRR4302543.7465273/94‑1 (MQ=60)

                                                                                       ATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA        >  SRR4302543.311067/1‑94 (MQ=60)

                                                                                       ATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA        <  SRR4302543.4078211/94‑1 (MQ=60)

                                                                                        TTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC       <  SRR4302543.4663134/94‑1 (MQ=60)

                                                                                        TTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC       <  SRR4302543.117543/94‑1 (MQ=60)

                                                                                         TACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC      <  SRR4302543.7865219/94‑1 (MQ=60)

                                                                                          ACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCA     <  SRR4302543.4659504/94‑1 (MQ=60)

                                                                                           CCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCAC    <  SRR4302543.4520208/94‑1 (MQ=60)

                                                                                           CCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCAC    >  SRR4302543.649793/1‑94 (MQ=60)

                                                                                            CACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT   <  SRR4302543.4077200/94‑1 (MQ=60)

                                                                                             ACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTT  <  SRR4302543.1884292/94‑1 (MQ=60)

                                                                                             ACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTT  <  SRR4302543.317896/94‑1 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTT  >  NC_000913/3902629‑3902815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`