Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,907,388 |
T→C |
E213E (GAA→GAG) |
pstC ← |
PstC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,907,388 | 0 | T | C | 100.0%
| 774.9
/ NA
| 243 | E213E (GAA→GAG) | pstC | PstC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (116/127); total (116/127) |
Only 100 of 254 total aligned reads displayed.
CATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACTTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTA > NC_000913/3907298‑3907477
|
tgttttCCCCGAGCGCGCGGCCCAGCCCCAGCATGAGGCCCCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTccc < 2:2701042/90‑1 (MQ=255)
tGGTTTCACCGAGCGCGCGGCCCCGCCCCCGCATGATGCCGCCGATAACACCATTTTTTGTGGACGGAAGAAAGATACGCCAGATAAACTccc > 2:4031475/1‑93 (MQ=255)
tGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTccc < 1:1863028/93‑1 (MQ=255)
ggTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCa < 2:1797491/93‑1 (MQ=255)
gTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAg < 1:2028827/93‑1 (MQ=255)
gTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAg > 2:2927258/1‑93 (MQ=255)
gTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAg < 1:1846268/93‑1 (MQ=255)
ttCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAggt < 2:3213752/93‑1 (MQ=255)
tCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAggtg < 1:1907454/93‑1 (MQ=255)
cACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAggtgg < 1:93408/93‑1 (MQ=255)
cccGAGCGCGCGGCCAAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAggtggt < 2:4171001/92‑1 (MQ=255)
aCCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAggtggg > 2:3802557/1‑92 (MQ=255)
ccGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCGCAGgttgtg > 2:2285133/1‑93 (MQ=255)
ccGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGgtggtg < 1:147952/93‑1 (MQ=255)
gAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCa > 1:745386/1‑93 (MQ=255)
gAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCa < 1:3556156/93‑1 (MQ=255)
aGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAg < 1:3470207/93‑1 (MQ=255)
aGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAg > 2:2853106/1‑93 (MQ=255)
cgcgGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCaa < 1:1107966/93‑1 (MQ=255)
cgGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAAtc > 1:2302161/1‑92 (MQ=255)
cgGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATa < 1:4537240/93‑1 (MQ=255)
ggCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATAc < 1:4366683/93‑1 (MQ=255)
ggCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATAc > 1:4492955/1‑93 (MQ=255)
cacccccagaATGAAGCCTCCGATAACACCATTGTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTa < 1:383074/90‑1 (MQ=255)
agccccagcATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAg < 2:2786220/93‑1 (MQ=255)
cagcATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGa > 2:3016487/1‑93 (MQ=255)
agcATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGAc < 1:1225535/93‑1 (MQ=255)
agcATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGAc < 2:752363/93‑1 (MQ=255)
cATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGActc > 1:2803169/1‑93 (MQ=255)
cATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGActc < 1:2135718/93‑1 (MQ=255)
atgatgCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGActct > 1:582877/1‑93 (MQ=255)
atgatgCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGActct < 2:1100184/93‑1 (MQ=255)
tgatgCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCtt > 2:3148259/1‑93 (MQ=255)
tgatgCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCtt > 2:1607219/1‑93 (MQ=255)
gatgCCGCTGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCttt < 2:1167033/93‑1 (MQ=255)
gatgCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCttt > 1:2257791/1‑93 (MQ=255)
atgCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTtc < 1:1350965/93‑1 (MQ=255)
ccgccgATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTtcatc < 2:2729056/93‑1 (MQ=255)
ccgccgATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTtcatc < 1:2393288/93‑1 (MQ=255)
cgccgATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTtcatca < 1:316785/93‑1 (MQ=255)
gccgATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTtcatcat < 2:3062078/93‑1 (MQ=255)
gccgATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTtcatcat < 2:4636614/93‑1 (MQ=255)
cgATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTtcatcatca > 1:2465703/1‑93 (MQ=255)
gATAACACCATTTGTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATCCCGTAGGCCGACTCTTTCATCATCAc < 1:1730085/93‑1 (MQ=255)
aTAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCAcc < 1:595638/93‑1 (MQ=255)
aTAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCAcc > 2:2865961/1‑93 (MQ=255)
tAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCg < 2:3934247/93‑1 (MQ=255)
tAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCg > 2:2101767/1‑93 (MQ=255)
tAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCg > 2:626237/1‑93 (MQ=255)
tAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCg > 2:660505/1‑93 (MQ=255)
acacCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCggg < 2:1945003/93‑1 (MQ=255)
acacCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCggg < 2:112630/93‑1 (MQ=255)
acacCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAAGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCggg > 1:470680/1‑93 (MQ=255)
cacCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCgggg > 2:1572998/1‑93 (MQ=255)
acCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGt > 1:2963588/1‑93 (MQ=255)
ccATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGtt > 1:763950/1‑93 (MQ=255)
cATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCCTCATCACCGGGGttt > 2:4093190/1‑93 (MQ=255)
cATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGttt > 1:88907/1‑93 (MQ=255)
aTTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTg > 2:4338248/1‑93 (MQ=255)
ttttGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGtt < 1:2668698/93‑1 (MQ=255)
ttttGGTGAACGAAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGtt < 2:2405010/93‑1 (MQ=255)
ttGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCg < 1:2625144/93‑1 (MQ=255)
tGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGCCTCTTTCATCATCACCGGGGTTTGTTCGa < 1:3289772/93‑1 (MQ=255)
ggTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGaa < 1:4393625/93‑1 (MQ=255)
gTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGGTTGTTCGAac > 2:3345486/1‑93 (MQ=255)
gTGAACGAAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAac < 2:80387/93‑1 (MQ=255)
gTGAACAGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAac < 2:2389810/93‑1 (MQ=255)
tGAACGGAACAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAaca < 1:1270342/93‑1 (MQ=255)
gAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAacac < 2:1362784/93‑1 (MQ=255)
gAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAacac < 2:3855768/93‑1 (MQ=255)
aaCGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAAcaca > 2:2465444/1‑93 (MQ=255)
aCGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGATTGTTCGAACACAt > 1:4660475/1‑93 (MQ=255)
cGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATc < 1:2548997/93‑1 (MQ=255)
ggAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCa > 2:3652379/1‑93 (MQ=255)
gaagaaCGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCAc > 1:1312549/1‑93 (MQ=255)
gaagaaCGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCAc > 2:1714463/1‑93 (MQ=255)
agaaCGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGc < 2:1264868/93‑1 (MQ=255)
agaaCGATACGCCAGATAACCTCCCAGGTGGGGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGc < 1:2557055/93‑1 (MQ=255)
agaaCGAGACGCCAGATACCCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGc < 2:1754511/93‑1 (MQ=255)
gaaCGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCa < 1:4422524/93‑1 (MQ=255)
gaaCGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCa < 1:1912801/93‑1 (MQ=255)
cGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTa > 2:1851532/1‑93 (MQ=255)
gATACGCCAGATACCCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAc < 1:1687856/93‑1 (MQ=255)
gATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAc < 2:2499848/93‑1 (MQ=255)
gATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAc > 2:4459422/1‑93 (MQ=255)
gATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAc > 2:3600945/1‑93 (MQ=255)
gATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAc < 2:2384032/93‑1 (MQ=255)
aaTACGCCAGATAGCCTCCCAGGTGGTTCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAc < 2:4191041/92‑1 (MQ=255)
aTACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAcc > 2:2028944/1‑93 (MQ=255)
aTACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAcc > 1:1930563/1‑93 (MQ=255)
tACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAccg > 1:1017679/1‑93 (MQ=255)
aCGACAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAccgc < 1:1208567/93‑1 (MQ=255)
gCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAccgccg < 2:504738/93‑1 (MQ=255)
ccAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACcgccgc > 1:3652197/1‑93 (MQ=255)
cAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCa > 1:3196975/1‑93 (MQ=255)
aGATAACCTCCCAGGTGGGGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCaa < 2:2575101/93‑1 (MQ=255)
gATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAAt < 1:3686390/93‑1 (MQ=255)
aTAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATg > 2:3448740/1‑93 (MQ=255)
tAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGt > 2:846231/1‑93 (MQ=255)
aaCCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTa < 1:4089091/93‑1 (MQ=255)
|
CATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACTTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTA > NC_000913/3907298‑3907477
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACTTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACGGA > NC_000913/3907295‑3907481
|
CGCCATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACC > SRR4302535.3095207/1‑94 (MQ=60)
CGCCATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACC < SRR4302535.3789390/94‑1 (MQ=60)
CCATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTC > SRR4302535.4451159/1‑94 (MQ=60)
ATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCC > SRR4302535.2408420/1‑94 (MQ=60)
TGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCA < SRR4302535.1876462/94‑1 (MQ=60)
GTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCGTTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGG < SRR4302535.2524520/94‑1 (MQ=60)
GTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGG < SRR4302535.1859575/94‑1 (MQ=60)
GTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGG < SRR4302535.2043452/94‑1 (MQ=60)
GTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGG < SRR4302535.108134/94‑1 (MQ=60)
TTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGT > SRR4302535.2599987/1‑94 (MQ=60)
TTTCACCGAGCCCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGT < SRR4302535.1348107/94‑1 (MQ=60)
TTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTG > SRR4302535.1732984/1‑94 (MQ=60)
TCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGG < SRR4302535.1921205/94‑1 (MQ=60)
CACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGT < SRR4302535.3804001/94‑1 (MQ=60)
CACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGT < SRR4302535.94071/94‑1 (MQ=60)
CCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGC < SRR4302535.148985/94‑1 (MQ=60)
CGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCA > SRR4302535.750625/1‑94 (MQ=60)
CGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCA < SRR4302535.1978306/94‑1 (MQ=60)
GAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAG < SRR4302535.3580821/94‑1 (MQ=60)
GAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAG > SRR4302535.1921232/1‑94 (MQ=60)
AGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGC < SRR4302535.3494321/94‑1 (MQ=60)
AGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGC > SRR4302535.181017/1‑94 (MQ=60)
CGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAAT < SRR4302535.1115878/94‑1 (MQ=60)
CGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAAT < SRR4302535.138835/94‑1 (MQ=60)
GCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATC > SRR4302535.2318634/1‑94 (MQ=60)
GCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATA > SRR4302535.969225/1‑94 (MQ=60)
CGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATAC < SRR4302535.2242500/94‑1 (MQ=60)
CGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATAC > SRR4302535.4523795/1‑94 (MQ=60)
CGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATAC < SRR4302535.4568279/94‑1 (MQ=60)
GGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACC < SRR4302535.925424/94‑1 (MQ=60)
GGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACC < SRR4302535.4396565/94‑1 (MQ=60)
GGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACC > SRR4302535.475990/1‑94 (MQ=60)
CCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTA < SRR4302535.516890/94‑1 (MQ=60)
CAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATACCCTCCCAGGTGGTGCAGCCAATACCGTAG < SRR4302535.4431263/94‑1 (MQ=60)
CAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAG < SRR4302535.471834/94‑1 (MQ=60)
CACCCCCAGAATGAAGCCTCCGATAACACCATTGTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAG < SRR4302535.385726/94‑1 (MQ=60)
AGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGG < SRR4302535.192479/94‑1 (MQ=60)
AGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGG < SRR4302535.1242799/94‑1 (MQ=60)
CCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCG > SRR4302535.3215467/1‑94 (MQ=60)
CAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGAC > SRR4302535.4482159/1‑94 (MQ=60)
CAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGAC > SRR4302535.3394836/1‑94 (MQ=60)
AGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACT < SRR4302535.1234301/94‑1 (MQ=60)
AGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACT < SRR4302535.1877185/94‑1 (MQ=60)
AGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACT > SRR4302535.1323226/1‑94 (MQ=60)
GCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTC > SRR4302535.2823104/1‑94 (MQ=60)
CATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCT > SRR4302535.586965/1‑94 (MQ=60)
CATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCT < SRR4302535.2151106/94‑1 (MQ=60)
ATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTT > SRR4302535.1822765/1‑94 (MQ=60)
ATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTT > SRR4302535.2692742/1‑94 (MQ=60)
TGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTT > SRR4302535.2273862/1‑94 (MQ=60)
TGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTT > SRR4302535.2651909/1‑94 (MQ=60)
GATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTC < SRR4302535.2479969/94‑1 (MQ=60)
GATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTC < SRR4302535.4334172/94‑1 (MQ=60)
GATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGGGCAGCCAATACCGTAGGCCGACTCTTTC > SRR4302535.33087/1‑94 (MQ=60)
ATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCA < SRR4302535.1863224/94‑1 (MQ=60)
ATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCA < SRR4302535.1360638/94‑1 (MQ=60)
TGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCAT < SRR4302535.1199596/94‑1 (MQ=60)
GCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATC < SRR4302535.4074513/94‑1 (MQ=60)
GCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATC < SRR4302535.76185/94‑1 (MQ=60)
CCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCA < SRR4302535.1298831/94‑1 (MQ=60)
CCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCA < SRR4302535.2410489/94‑1 (MQ=60)
CGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCAT < SRR4302535.318985/94‑1 (MQ=60)
CGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCAT < SRR4302535.2896510/94‑1 (MQ=60)
CCCCGATAACACCATTTTTGGTAACCGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATGCCGTAGGCCGACTCTTTCATCAT < SRR4302535.2896511/94‑1 (MQ=60)
CCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCA > SRR4302535.2483480/1‑94 (MQ=60)
CGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCAC > SRR4302535.3632902/1‑94 (MQ=60)
GATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACC > SRR4302535.2612911/1‑94 (MQ=60)
GATAACACCATTTGTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATCCCGTAGGCCGACTCTTTCATCATCACC < SRR4302535.1742591/94‑1 (MQ=60)
ATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCG > SRR4302535.4410336/1‑94 (MQ=60)
ATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCG < SRR4302535.599813/94‑1 (MQ=60)
AACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGG > SRR4302535.4628146/1‑94 (MQ=60)
AACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAAGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGG > SRR4302535.473973/1‑94 (MQ=60)
CACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGT > SRR4302535.851218/1‑94 (MQ=60)
CACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGT > SRR4302535.2984388/1‑94 (MQ=60)
ACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTT > SRR4302535.2180481/1‑94 (MQ=60)
ACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTT > SRR4302535.769332/1‑94 (MQ=60)
GCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTT < SRR4302535.4533624/94‑1 (MQ=60)
CCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTT > SRR4302535.89535/1‑94 (MQ=60)
CCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTT < SRR4302535.1220630/94‑1 (MQ=60)
CATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTG > SRR4302535.3651007/1‑94 (MQ=60)
ATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGT < SRR4302535.3565533/94‑1 (MQ=60)
ATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGT > SRR4302535.873695/1‑94 (MQ=60)
ATTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGT > SRR4302535.3147405/1‑94 (MQ=60)
TTTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTT > SRR4302535.2278358/1‑94 (MQ=60)
TTTTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTC < SRR4302535.2687799/94‑1 (MQ=60)
TTGTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTC < SRR4302535.645618/94‑1 (MQ=60)
TTGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGA < SRR4302535.2643958/94‑1 (MQ=60)
TGGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGCCTCTTTCATCATCACCGGGGTTTGTTCGAA < SRR4302535.3312645/94‑1 (MQ=60)
GGTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAAC < SRR4302535.4423689/94‑1 (MQ=60)
GTGAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACA > SRR4302535.202427/1‑94 (MQ=60)
TGAACGGAACAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACAC < SRR4302535.1279419/94‑1 (MQ=60)
GAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACA < SRR4302535.1668371/94‑1 (MQ=60)
GAACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACA > SRR4302535.2567713/1‑94 (MQ=60)
AACGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGATTGTTCGAACACAT > SRR4302535.4691997/1‑94 (MQ=60)
CGGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCA < SRR4302535.2567339/94‑1 (MQ=60)
GGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCAC < SRR4302535.3856652/94‑1 (MQ=60)
GGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCAC > SRR4302535.1321932/1‑94 (MQ=60)
GGAAGAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCAC < SRR4302535.2724916/94‑1 (MQ=60)
GGAAGAACGATACGCCAGAGACCCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCAC < SRR4302535.587957/94‑1 (MQ=60)
AGAACGATACGCCAGATAACCTCCCAGGTGGGGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCA < SRR4302535.2575464/94‑1 (MQ=60)
GAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCAT < SRR4302535.1926586/94‑1 (MQ=60)
GAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCAT < SRR4302535.4380517/94‑1 (MQ=60)
GAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCAT < SRR4302535.4452812/94‑1 (MQ=60)
GAACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCAT < SRR4302535.1917641/94‑1 (MQ=60)
ACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTA > SRR4302535.1142709/1‑94 (MQ=60)
ACGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTA < SRR4302535.1691607/94‑1 (MQ=60)
CGATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTAC > SRR4302535.1252202/1‑94 (MQ=60)
GATACGCCAGATACCCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACC < SRR4302535.1700074/94‑1 (MQ=60)
GATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACC < SRR4302535.2083632/94‑1 (MQ=60)
GATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACC > SRR4302535.1944475/1‑94 (MQ=60)
GATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACC < SRR4302535.3678218/94‑1 (MQ=60)
GATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACC < SRR4302535.3216386/94‑1 (MQ=60)
ATACGCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCG > SRR4302535.1024913/1‑94 (MQ=60)
ACGACAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCC < SRR4302535.1217252/94‑1 (MQ=60)
GCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGC > SRR4302535.3677485/1‑94 (MQ=60)
GCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGA > SRR4302535.4510626/1‑94 (MQ=60)
GCCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACAGGCGC > SRR4302535.234708/1‑94 (MQ=60)
CCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCA > SRR4302535.3219098/1‑94 (MQ=60)
CCAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGGTTGTTCGAACACATCACGCATTACCGCCGCA > SRR4302535.3385817/1‑94 (MQ=60)
CAGATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAA > SRR4302535.2905507/1‑94 (MQ=60)
GATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATG < SRR4302535.1930549/94‑1 (MQ=60)
GATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATG < SRR4302535.3711894/94‑1 (MQ=60)
ATAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGT > SRR4302535.2501186/1‑94 (MQ=60)
TAACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTA > SRR4302535.4615054/1‑94 (MQ=60)
AACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTAC < SRR4302535.4117070/94‑1 (MQ=60)
AACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTAC < SRR4302535.650251/94‑1 (MQ=60)
ACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACG < SRR4302535.3198086/94‑1 (MQ=60)
ACCTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACG > SRR4302535.2382675/1‑94 (MQ=60)
CCTCCCAGGTGGTGCAGCCAATACCGTATGCCGCCTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACGG < SRR4302535.4259245/94‑1 (MQ=60)
CATCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACGG > SRR4302535.4453126/1‑94 (MQ=60)
CTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACGGA > SRR4302535.4032312/1‑94 (MQ=60)
CTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACGGA > SRR4302535.3758462/1‑94 (MQ=60)
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CGCCATGGTTTCACCGAGCGCGCGGCCCAGCCCCAGCATGATGCCGCCGATAACACCATTTTTGGTGAACGGAAGAACGATACGCCAGATAACTTCCCAGGTGGTGCAGCCAATACCGTAGGCCGACTCTTTCATCATCACCGGGGTTTGTTCGAACACATCACGCATTACCGCCGCAATGTACGGA > NC_000913/3907295‑3907481
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
