Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,935,727	C→T	P270S (CCA→TCA)	rbsK →	ribokinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,935,727	0	C	T	100.0%	956.5 / NA	264	P270S (CCA→TCA)	rbsK	ribokinase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (145/119); total (145/119)

Only 100 of 267 total aligned reads displayed.

GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAA  >  NC_000913/3935637‑3935816

gTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCa                                                                                         >  2:3620251/1‑93 (MQ=255)

 ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAcatcat                                                                                        >  1:2685040/1‑93 (MQ=255)

 ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAt                                                                                        >  1:3138917/1‑93 (MQ=255)

 ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAt                                                                                        <  2:650118/93‑1 (MQ=255)

 ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAt                                                                                        >  1:1559075/1‑93 (MQ=255)

 ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAt                                                                                        >  1:1834957/1‑93 (MQ=255)

 ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAt                                                                                        >  1:980081/1‑93 (MQ=255)

 ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAt                                                                                        >  1:832967/1‑93 (MQ=255)

  tCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAtt                                                                                       <  1:1680594/93‑1 (MQ=255)

   ccTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTg                                                                                      <  2:2854485/93‑1 (MQ=255)

    cTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGc                                                                                     <  1:2620333/93‑1 (MQ=255)

    cTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGc                                                                                     >  1:2140267/1‑93 (MQ=255)

     tGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGcc                                                                                    >  2:3545168/1‑93 (MQ=255)

      ggATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCa                                                                                   >  2:4259728/1‑93 (MQ=255)

        gttCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCaga                                                                                 <  1:1533714/92‑1 (MQ=255)

        aTTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCaga                                                                                 <  1:3272528/93‑1 (MQ=255)

         ttCCGGGTGCAGGCTGTCGATACCATTGCTGTCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCagag                                                                                <  2:282420/93‑1 (MQ=255)

         ttCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCagag                                                                                <  2:310100/93‑1 (MQ=255)

             gggTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGa                                                                            >  1:688683/1‑93 (MQ=255)

             gggTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGa                                                                            >  2:2182788/1‑93 (MQ=255)

              ggTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGAt                                                                           <  1:4141467/93‑1 (MQ=255)

              ggTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGAt                                                                           >  1:3658159/1‑93 (MQ=255)

                tGCAGTCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGACATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTc                                                                         <  2:2523934/93‑1 (MQ=255)

                tGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTc                                                                         >  2:1148663/1‑93 (MQ=255)

                tGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTc                                                                         >  2:2296238/1‑93 (MQ=255)

                 gCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAGCGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCg                                                                        <  1:1054764/93‑1 (MQ=255)

                 gCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCg                                                                        >  2:240502/1‑93 (MQ=255)

                 gCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCg                                                                        >  1:3734451/1‑93 (MQ=255)

                  cAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGt                                                                       <  1:2248317/93‑1 (MQ=255)

                   aGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGtt                                                                      >  1:3202706/1‑93 (MQ=255)

                    ggCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGttt                                                                     <  2:3752827/93‑1 (MQ=255)

                    ggCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGttt                                                                     <  1:4268045/93‑1 (MQ=255)

                    ggCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGttt                                                                     >  1:560717/1‑93 (MQ=255)

                        gTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGcc                                                                 >  2:3663680/1‑93 (MQ=255)

                          cGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCa                                                               <  2:3394744/93‑1 (MQ=255)

                           gATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAt                                                              >  2:10687/1‑93 (MQ=255)

                            aTACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAtg                                                             >  1:917498/1‑93 (MQ=255)

                            aTACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAtg                                                             >  1:763686/1‑93 (MQ=255)

                             tACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAtgc                                                            <  2:2043067/93‑1 (MQ=255)

                              aCCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAtgct                                                           >  2:153593/1‑93 (MQ=255)

                               ccATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAtgctg                                                          >  2:4485002/1‑93 (MQ=255)

                               ccATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAtgctg                                                          <  1:3989079/93‑1 (MQ=255)

                                cATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAtgctgc                                                         >  1:1005384/1‑93 (MQ=255)

                                 aTTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGcc                                                        <  2:1252826/93‑1 (MQ=255)

                                 aTTGCTGCCGGAGATACCTTGAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGcc                                                        <  2:838393/93‑1 (MQ=255)

                                  ttGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCg                                                       >  2:4241409/1‑93 (MQ=255)

                                  ttGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCg                                                       >  2:1893530/1‑93 (MQ=255)

                                  ttGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCg                                                       >  2:3267103/1‑93 (MQ=255)

                                  ttGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCg                                                       >  2:2710489/1‑93 (MQ=255)

                                    gctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCt                                                     >  2:3470088/1‑93 (MQ=255)

                                     ctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTg                                                    >  1:1247000/1‑93 (MQ=255)

                                       gcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCg                                                  >  1:628133/1‑93 (MQ=255)

                                          ggAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGAtt                                               >  2:2601303/1‑93 (MQ=255)

                                            agaTACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGc                                             <  2:4224796/93‑1 (MQ=255)

                                             gaTACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGcc                                            >  2:1607394/1‑93 (MQ=255)

                                             gaTACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGcc                                            >  1:1911124/1‑93 (MQ=255)

                                              aTACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCg                                           <  2:1475105/93‑1 (MQ=255)

                                              aTACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCg                                           >  2:2152379/1‑93 (MQ=255)

                                               tACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGt                                          >  1:1449418/1‑93 (MQ=255)

                                               tACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGt                                          >  2:3723066/1‑93 (MQ=255)

                                               tACCTTTAACGGTGCGTTAATCACAGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGt                                          >  2:3150510/1‑93 (MQ=255)

                                                 ccTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTaa                                        >  2:183042/1‑93 (MQ=255)

                                                  cTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAac                                       <  2:1390001/93‑1 (MQ=255)

                                                  cTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAac                                       >  2:264394/1‑93 (MQ=255)

                                                  cTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAac                                       <  1:4645034/93‑1 (MQ=255)

                                                   tttAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAaca                                      <  1:30708/93‑1 (MQ=255)

                                                   tttAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAaca                                      <  1:2477770/93‑1 (MQ=255)

                                                     tAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACg                                    <  2:1303648/93‑1 (MQ=255)

                                                       aCGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGGCCATGCTGCCGCTGCGATTGCCGTAACACGTa                                  >  2:1884421/1‑93 (MQ=255)

                                                       aCGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTa                                  <  2:3804320/93‑1 (MQ=255)

                                                         ggTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTaaa                                >  2:2499673/1‑93 (MQ=255)

                                                         ggTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTaaa                                <  2:333222/93‑1 (MQ=255)

                                                          gTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAg                               <  2:534609/93‑1 (MQ=255)

                                                          gTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAg                               <  2:2932145/93‑1 (MQ=255)

                                                           tGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAgg                              >  1:3931783/1‑93 (MQ=255)

                                                            gCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGgc                             <  1:1196174/93‑1 (MQ=255)

                                                            gCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGgc                             <  1:3019274/93‑1 (MQ=255)

                                                             cGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGgcg                            <  2:3979459/93‑1 (MQ=255)

                                                              gTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGgcgc                           >  1:2694800/1‑93 (MQ=255)

                                                               ttAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGca                          >  1:286735/1‑93 (MQ=255)

                                                               ttAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGca                          <  1:3795010/93‑1 (MQ=255)

                                                                  aTCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACaa                       >  2:913378/1‑93 (MQ=255)

                                                                  aTCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACaa                       >  1:3412427/1‑93 (MQ=255)

                                                                   tCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAAc                      >  1:2104682/1‑93 (MQ=255)

                                                                     aCGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCt                    >  2:4345585/1‑93 (MQ=255)

                                                                      cGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGTCGCACAACCtt                   <  2:671673/93‑1 (MQ=255)

                                                                        gCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTcc                 <  1:3836336/93‑1 (MQ=255)

                                                                        gCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTcc                 >  1:1871036/1‑93 (MQ=255)

                                                                         cATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCg                >  1:4421593/1‑93 (MQ=255)

                                                                          aTTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGt               >  2:3528456/1‑93 (MQ=255)

                                                                           ttGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTa              <  2:463879/93‑1 (MQ=255)

                                                                           ttGCTGAAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTa              <  1:2787566/93‑1 (MQ=255)

                                                                             gCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTAcc            <  2:2247319/93‑1 (MQ=255)

                                                                                tgaagaaAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTg         <  1:1085201/92‑1 (MQ=255)

                                                                                  aagaaAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGc       >  2:1360581/1‑93 (MQ=255)

                                                                                   agaaAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCg      <  2:2072318/93‑1 (MQ=255)

                                                                                    gaaAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGt     >  1:4199457/1‑93 (MQ=255)

                                                                                    gaaAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGt     >  1:3580037/1‑93 (MQ=255)

                                                                                       aaaTCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGaa  <  1:1998184/93‑1 (MQ=255)

                                                                                       aaaTCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGaa  <  2:1810705/93‑1 (MQ=255)

GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAA  >  NC_000913/3935637‑3935816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGA  >  NC_000913/3935634‑3935820

CGCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAAT                                                                                               >  SRR4302535.4713864/1‑94 (MQ=60)

 GCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATC                                                                                              >  SRR4302535.2044528/1‑94 (MQ=60)

  CGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGATGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCA                                                                                             <  SRR4302535.4237741/94‑1 (MQ=60)

   GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAACATCAT                                                                                            >  SRR4302535.2704238/1‑94 (MQ=60)

   GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAT                                                                                            >  SRR4302535.987047/1‑94 (MQ=60)

   GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAT                                                                                            >  SRR4302535.1570316/1‑94 (MQ=60)

   GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAT                                                                                            >  SRR4302535.1848197/1‑94 (MQ=60)

   GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAT                                                                                            >  SRR4302535.3160760/1‑94 (MQ=60)

   GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAT                                                                                            <  SRR4302535.769118/94‑1 (MQ=60)

   GTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCAT                                                                                            >  SRR4302535.838805/1‑94 (MQ=60)

    TTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATT                                                                                           >  SRR4302535.2137949/1‑94 (MQ=60)

     TCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTG                                                                                          <  SRR4302535.1692767/94‑1 (MQ=60)

      CCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGC                                                                                         <  SRR4302535.2617860/94‑1 (MQ=60)

      CCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGC                                                                                         >  SRR4302535.2155676/1‑94 (MQ=60)

       CTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCC                                                                                        <  SRR4302535.2639117/94‑1 (MQ=60)

       CTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCC                                                                                        <  SRR4302535.202498/94‑1 (MQ=60)

       CTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCC                                                                                        >  SRR4302535.1907125/1‑94 (MQ=60)

         GGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAG                                                                                      >  SRR4302535.3089320/1‑94 (MQ=60)

           GTTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAG                                                                                    <  SRR4302535.1544764/94‑1 (MQ=60)

           ATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAG                                                                                    <  SRR4302535.2239228/94‑1 (MQ=60)

           ATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAG                                                                                    <  SRR4302535.3295261/94‑1 (MQ=60)

             TCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGC                                                                                  <  SRR4302535.676470/94‑1 (MQ=60)

              CCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCG                                                                                 <  SRR4302535.1529875/94‑1 (MQ=60)

              CCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCG                                                                                 <  SRR4302535.3874180/94‑1 (MQ=60)

               CGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGA                                                                                >  SRR4302535.693506/1‑94 (MQ=60)

               CGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGA                                                                                >  SRR4302535.4336555/1‑94 (MQ=60)

                GGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGAT                                                                               >  SRR4302535.3683482/1‑94 (MQ=60)

                 GGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATT                                                                              <  SRR4302535.685810/94‑1 (MQ=60)

                 GGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATT                                                                              <  SRR4302535.4169827/94‑1 (MQ=60)

                  GTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTC                                                                             <  SRR4302535.469564/94‑1 (MQ=60)

                   TGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCG                                                                            >  SRR4302535.3760298/1‑94 (MQ=60)

                    GCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAGCGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGT                                                                           <  SRR4302535.1062265/94‑1 (MQ=60)

                     CAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTT                                                                          >  SRR4302535.3224880/1‑94 (MQ=60)

                     CAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTT                                                                          <  SRR4302535.2264322/94‑1 (MQ=60)

                     CAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTT                                                                          >  SRR4302535.2691206/1‑94 (MQ=60)

                      AGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTT                                                                         >  SRR4302535.2119885/1‑94 (MQ=60)

                      AGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTT                                                                         <  SRR4302535.323377/94‑1 (MQ=60)

                      AGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTT                                                                         >  SRR4302535.1848285/1‑94 (MQ=60)

                      AGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTT                                                                         >  SRR4302535.564639/1‑94 (MQ=60)

                      AGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTT                                                                         <  SRR4302535.1626011/94‑1 (MQ=60)

                       GGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTT                                                                        <  SRR4302535.3682845/94‑1 (MQ=60)

                       GGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTT                                                                        <  SRR4302535.4297265/94‑1 (MQ=60)

                       GGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTT                                                                        <  SRR4302535.2746472/94‑1 (MQ=60)

                        GCTGTCGATACCAGTTCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTG                                                                       <  SRR4302535.3243243/94‑1 (MQ=60)

                         CTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGTGATTCGTTTTGC                                                                      >  SRR4302535.2850611/1‑94 (MQ=60)

                           GTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCC                                                                    >  SRR4302535.3984946/1‑94 (MQ=60)

                           GTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCC                                                                    <  SRR4302535.1048157/94‑1 (MQ=60)

                             CGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCAT                                                                  <  SRR4302535.3677661/94‑1 (MQ=60)

                              GATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATG                                                                 >  SRR4302535.4657293/1‑94 (MQ=60)

                              GATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATG                                                                 >  SRR4302535.3159360/1‑94 (MQ=60)

                              GATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATG                                                                 >  SRR4302535.769066/1‑94 (MQ=60)

                              GATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATG                                                                 >  SRR4302535.924005/1‑94 (MQ=60)

                               ATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGC                                                                >  SRR4302535.883356/1‑94 (MQ=60)

                                 ACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTG                                                              >  SRR4302535.3144278/1‑94 (MQ=60)

                                  CCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGC                                                             >  SRR4302535.1012529/1‑94 (MQ=60)

                                  CCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGC                                                             <  SRR4302535.4016362/94‑1 (MQ=60)

                                      TGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCT                                                         <  SRR4302535.305898/94‑1 (MQ=60)

                                       GCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTG                                                        >  SRR4302535.1255896/1‑94 (MQ=60)

                                         TGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCG                                                      >  SRR4302535.632509/1‑94 (MQ=60)

                                            CGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATT                                                   <  SRR4302535.3860107/94‑1 (MQ=60)

                                            CGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATT                                                   <  SRR4302535.978775/94‑1 (MQ=60)

                                             GGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTG                                                  <  SRR4302535.2958240/94‑1 (MQ=60)

                                             GGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTG                                                  >  SRR4302535.1084759/1‑94 (MQ=60)

                                               AGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCC                                                >  SRR4302535.1924897/1‑94 (MQ=60)

                                               AGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCC                                                <  SRR4302535.2667541/94‑1 (MQ=60)

                                               AGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCC                                                <  SRR4302535.1552550/94‑1 (MQ=60)

                                               AGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCC                                                >  SRR4302535.189228/1‑94 (MQ=60)

                                                 ATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGT                                              >  SRR4302535.1459782/1‑94 (MQ=60)

                                                  TACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTA                                             >  SRR4302535.613694/1‑94 (MQ=60)

                                                   ACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAA                                            >  SRR4302535.901182/1‑94 (MQ=60)

                                                   ACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAA                                            >  SRR4302535.2759218/1‑94 (MQ=60)

                                                    CCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAAC                                           <  SRR4302535.3774959/94‑1 (MQ=60)

                                                     CTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACA                                          <  SRR4302535.4676513/94‑1 (MQ=60)

                                                      TTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACAC                                         <  SRR4302535.30944/94‑1 (MQ=60)

                                                      TTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACAC                                         <  SRR4302535.2495640/94‑1 (MQ=60)

                                                       TTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACG                                        <  SRR4302535.727485/94‑1 (MQ=60)

                                                          ACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAA                                     >  SRR4302535.1654882/1‑94 (MQ=60)

                                                            GGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAG                                   <  SRR4302535.4288049/94‑1 (MQ=60)

                                                            GGTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAG                                   <  SRR4302535.2386915/94‑1 (MQ=60)

                                                             GTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGG                                  >  SRR4302535.4158463/1‑94 (MQ=60)

                                                             GTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGG                                  >  SRR4302535.3958624/1‑94 (MQ=60)

                                                             GTGCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGG                                  >  SRR4302535.2604103/1‑94 (MQ=60)

                                                               GCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTACAGGCG                                >  SRR4302535.4191483/1‑94 (MQ=60)

                                                               GCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCG                                >  SRR4302535.4166132/1‑94 (MQ=60)

                                                               GCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCG                                <  SRR4302535.1204744/94‑1 (MQ=60)

                                                               GCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCG                                <  SRR4302535.3040421/94‑1 (MQ=60)

                                                               GCGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCG                                <  SRR4302535.1321435/94‑1 (MQ=60)

                                                                CGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGC                               >  SRR4302535.3404873/1‑94 (MQ=60)

                                                                CGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGC                               >  SRR4302535.4196011/1‑94 (MQ=60)

                                                                CGTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGC                               >  SRR4302535.2714061/1‑94 (MQ=60)

                                                                CGTTAATCACGGCATTGCTGGAAGAAAAATCATTGACAGAGGAGATTCGTTTTGGCCATGCTGCCGCTGCCATTGAGGTAAGACGTAAAGGCGC                               >  SRR4302535.2714060/1‑94 (MQ=60)

                                                                 GTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCA                              <  SRR4302535.2251085/94‑1 (MQ=60)

                                                                 GTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCA                              >  SRR4302535.288741/1‑94 (MQ=60)

                                                                 GTTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCA                              >  SRR4302535.434020/1‑94 (MQ=60)

                                                                  TTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCAC                             <  SRR4302535.3821171/94‑1 (MQ=60)

                                                                  TTAATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCAC                             >  SRR4302535.2825370/1‑94 (MQ=60)

                                                                    AATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAA                           <  SRR4302535.149713/94‑1 (MQ=60)

                                                                    AATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAA                           >  SRR4302535.3436172/1‑94 (MQ=60)

                                                                     ATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAAC                          >  SRR4302535.4475166/1‑94 (MQ=60)

                                                                     ATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAAC                          >  SRR4302535.317965/1‑94 (MQ=60)

                                                                     ATCACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAAC                          >  SRR4302535.2119861/1‑94 (MQ=60)

                                                                       CACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCT                        >  SRR4302535.1329108/1‑94 (MQ=60)

                                                                       CACGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCT                        <  SRR4302535.1976241/94‑1 (MQ=60)

                                                                         CGGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTC                      >  SRR4302535.111846/1‑94 (MQ=60)

                                                                          GGCATTGCTGGAAGAAAAATCATTGCCAGGGGCGATTCTTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCC                     <  SRR4302535.3743177/94‑1 (MQ=60)

                                                                          GGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCC                     >  SRR4302535.1934185/1‑94 (MQ=60)

                                                                          GGCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCC                     >  SRR4302535.1884521/1‑94 (MQ=60)

                                                                           GCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCG                    >  SRR4302535.804292/1‑94 (MQ=60)

                                                                           GCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCG                    <  SRR4302535.3862788/94‑1 (MQ=60)

                                                                           GCATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCG                    >  SRR4302535.4451872/1‑94 (MQ=60)

                                                                             ATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTA                  >  SRR4302535.390381/1‑94 (MQ=60)

                                                                             ATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTA                  >  SRR4302535.1828450/1‑94 (MQ=60)

                                                                             ATTGCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTA                  >  SRR4302535.3847802/1‑94 (MQ=60)

                                                                              TTGCTGAAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTAC                 <  SRR4302535.2807400/94‑1 (MQ=60)

                                                                                GCTGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCG               <  SRR4302535.373409/94‑1 (MQ=60)

                                                                                  TGGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTG             <  SRR4302535.2704367/94‑1 (MQ=60)

                                                                                   TGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGG            <  SRR4302535.1092915/94‑1 (MQ=60)

                                                                                   GGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGCTTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGG            >  SRR4302535.609838/1‑94 (MQ=60)

                                                                                   GGAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGG            >  SRR4302535.1190286/1‑94 (MQ=60)

                                                                                    GAAGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGC           >  SRR4302535.3308788/1‑94 (MQ=60)

                                                                                      AGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGT         >  SRR4302535.1741236/1‑94 (MQ=60)

                                                                                      AGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGT         >  SRR4302535.4228195/1‑94 (MQ=60)

                                                                                      AGAAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGT         >  SRR4302535.3604850/1‑94 (MQ=60)

                                                                                        AAAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGA       <  SRR4302535.3438166/94‑1 (MQ=60)

                                                                                         AAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAA      >  SRR4302535.1226128/1‑94 (MQ=60)

                                                                                         AAAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAA      >  SRR4302535.1077923/1‑94 (MQ=60)

                                                                                          AAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAG     >  SRR4302535.1361288/1‑94 (MQ=60)

                                                                                          AAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAG     <  SRR4302535.2012575/94‑1 (MQ=60)

                                                                                          AAATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAG     >  SRR4302535.304764/1‑94 (MQ=60)

                                                                                            ATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAG   <  SRR4302535.828675/94‑1 (MQ=60)

                                                                                            ATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAG   <  SRR4302535.3646014/94‑1 (MQ=60)

                                                                                            ATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAG   >  SRR4302535.1117057/1‑94 (MQ=60)

                                                                                            ATCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAG   >  SRR4302535.2550229/1‑94 (MQ=60)

                                                                                             TCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGA  >  SRR4302535.3075907/1‑94 (MQ=60)

CGCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGA  >  NC_000913/3935634‑3935820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`