Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	3,951,167	+GCG	coding (36/1818 nt)	ilvD →	dihydroxyacid dehydratase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3951166	10 (0.060)	133 (0.750) +GGC	76/176	0.7	93.2%	coding (35/1818 nt)	ilvD	dihydroxyacid dehydratase
*	?	NC_000913	3951167 =	10 (0.050)	133 (0.750) +GGC	76/176	0.7	93.2%	coding (36/1818 nt)	ilvD	dihydroxyacid dehydratase

Only 100 of 134 total aligned reads displayed.

AGACAGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3951075‑3951166

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCC  >  NC_000913/3951167‑3951252

|||

AGACAGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGGCGGGCGCTGTGGG                                                                                          >  1:862998/1‑93

       CACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCGCCac                                                                                   <  2:2359060/93‑3

         CTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGGCGTGGGGCGCCgccg                                                                                 >  1:4101370/1‑89

           GGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGA                                                                              <  1:2582171/93‑1

            GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAA                                                                             <  1:2016868/93‑1

            GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAA                                                                             <  1:1862416/93‑1

            GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTTGGGTGTGGCGCGCCCCCCGGA                                                                              >  2:818375/1‑93

             GAGTAAATAAAGTATGCCTAAGTACCGTTCTGCCTCCACCACTCATGGTCGTAATATGTCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAAT                                                                            <  2:4352926/93‑1

             GAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAAT                                                                            <  2:2733213/93‑1

             GAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAAT                                                                            <  1:1710014/93‑1

               GTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTTATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGA                                                                          <  1:2514428/93‑1

               GTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGA                                                                          <  1:1461103/93‑1

               GTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGA                                                                          <  2:3442597/93‑1

               GTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGCTGTGGGGCGCCACCCGGgcga                                                                           >  2:3198068/1‑89

                 AAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACC                                                                        <  1:2580357/93‑1

                   ATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGA                                                                      <  1:3774570/93‑1

                   ATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGA                                                                      <  2:2552032/93‑1

                   ATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGA                                                                      <  2:4441387/93‑1

                    TAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGAC                                                                     <  2:150120/93‑1

                     AAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACG                                                                    <  1:426568/93‑1

                      AAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGC                                                                   <  1:2597083/93‑1

                      AAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGC                                                                   <  2:4202934/93‑1

                         TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGA                                                                <  2:1373749/93‑1

                         TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGA                                                                <  2:1844005/93‑1

                         TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGA                                                                <  2:2236422/93‑1

                          ATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGAT                                                               <  1:2956675/93‑1

                           TGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGCTGTGGCGCG‑CCACCCGGATGAGCGACGCCGAat                                                              >  2:1527028/1‑91

                            GCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTT                                                             <  1:4442782/93‑1

                             CCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTC                                                            <  2:3832188/93‑1

                             CCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTC                                                            <  1:568542/93‑1

                             CCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTC                                                            <  1:2078426/93‑1

                              CTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCG                                                           <  1:4581764/93‑1

                               TAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGGGCTGTGGGGCGCCCCCCGGAA‑GACCGGCGCCGCTTTtcg                                                          >  2:3879453/1‑90

                                AAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGT                                                         <  1:653542/93‑1

                                  GTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAA                                                       <  1:1285815/93‑1

                                  GTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAA                                                       <  2:2820909/93‑1

                                  GTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAA                                                       <  2:3576927/93‑1

                                  GTACCATTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAA                                                       <  2:713075/93‑1

                                   TACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAG                                                      <  1:2253934/93‑1

                                   TACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAG                                                      <  1:24522/93‑1

                                    ACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGC                                                     <  1:4454120/93‑1

                                       GTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGA                                                  <  1:1617350/93‑1

                                        TTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGAT                                                 <  1:3361877/93‑1

                                        TTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGAT                                                 <  1:3379314/93‑1

                                          CCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                               <  2:4225999/93‑1

                                           CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTAT                                              <  2:4628964/93‑1

                                            cCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                             <  2:4027101/92‑1

                                            GCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                             <  1:2298397/93‑1

                                            GCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                             <  2:4027100/93‑1

                                            GCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                             <  2:675469/93‑1

                                              CACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGC                                           <  2:2770848/93‑1

                                                CCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGG                                         <  2:2466285/93‑1

                                                 CACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGT                                        <  2:342621/93‑1

                                                  ACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTT                                       <  2:575273/93‑1

                                                   CCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTG                                      <  1:2823594/93‑1

                                                    CACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGT                                     <  1:4365435/93‑1

                                                      CTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGA                                   <  1:3870589/93‑1

                                                      CTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGA                                   <  1:2304713/93‑1

                                                       TCATGGTCGTAATATGGCGGGTTCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAA                                  <  2:1564162/93‑1

                                                        CATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAC                                 <  1:913430/93‑1

                                                         ATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                                <  2:3729962/93‑1

                                                         ATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                                <  2:243691/93‑1

                                                          TGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTC                               <  2:813042/93‑1

                                                           GGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCG                              <  2:1971165/93‑1

                                                             TCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTT                            <  2:4362260/93‑1

                                                             TCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTT                            <  1:605988/93‑1

                                                              CGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTC                           <  2:1230502/93‑1

                                                              CGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTC                           <  1:1673345/93‑1

                                                              CGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTC                           <  1:4295431/93‑1

                                                               GTAATATGGCGGGTGCGCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCA                          <  1:1247479/93‑1

                                                                TAATATGGCCGGTGCTCGTGCGCTGTGGCGCG‑CCACTGGAATGACCGACGCTGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCtc                         <  2:4386900/93‑3

                                                                   TATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCA                      >  1:3727332/1‑93

                                                                    ATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAA                     <  2:302894/93‑1

                                                                     TGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAT                    <  1:2538681/93‑1

                                                                      GGCGGGTGCTCGTGCGCTGGGGCGCG‑CCACCGGGATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGGTGTGAACTCGTTCACCCAAct                   >  2:2205896/1‑91

                                                                       GCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTT                  >  2:424934/1‑93

                                                                         GGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGT                <  2:615285/93‑1

                                                                          GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA               <  1:1527600/93‑1

                                                                          GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA               <  2:689301/93‑1

                                                                          GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA               >  1:3944938/1‑93

                                                                          GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA               <  2:3128664/93‑1

                                                                           GTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC              <  2:1701057/93‑1

                                                                           GTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC              <  2:2098270/93‑1

                                                                           GTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC              <  2:1293473/93‑1

                                                                           GTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC              <  1:2943917/93‑1

                                                                            TGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC             >  1:903632/1‑93

                                                                            TGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC             <  1:1804770/93‑1

                                                                             GCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCG            >  2:400363/1‑93

                                                                               TCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGATCACCCAATTTGTACCGGG          <  2:4583986/93‑1

                                                                                CGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGT         <  2:1053976/93‑1

                                                                                 GTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTC        >  1:468030/1‑93

                                                                                 GTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTC        <  2:738465/93‑1

                                                                                 GTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTC        <  2:10696/93‑1

                                                                                    CGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGCTTATCGCGGTTGTGATCTCGTTCACCCAATTTGTACCGGGTCACG     <  2:346280/93‑1

                                                                                     GCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGT    >  1:3303307/1‑93

                                                                                      CTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTC   <  1:362250/93‑1

                                                                                      CTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTC   <  1:584000/93‑1

                                                                                      CTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTGGTGAATTCGTTCACCCAATTTGTACCGGGTCACGTC   >  1:547357/1‑93

                                                                                       TGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGCACTCGTTCACCCAATTTGTACCGGGTCACGTCC  >  1:1091047/1‑93

                                                                                       TGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCC  >  2:3518971/1‑93

|||

AGACAGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3951075‑3951166

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCC  >  NC_000913/3951167‑3951252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A