Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,124 |
+G |
intergenic (+58/+26) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,123 | 1 | . | G | 98.8%
| 461.5
/ ‑1.5
| 168 | intergenic (+57/+27) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (32/134); total (33/135) |
| Fisher's exact test for biased strand distribution p-value = 3.55e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 182 total aligned reads displayed.
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957034‑3957210
|
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 1:4068166/93‑1 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACCGGGAGAGGGAGAAAACACT‑C‑AA‑ggcc > 2:705210/1‑90 (MQ=21)
atGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 2:4422825/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 1:985067/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 2:560493/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 1:2604471/93‑1 (MQ=18)
aggAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 1:3394723/91‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTcc < 1:1021635/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTcc < 2:2060299/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTcc < 1:749614/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCt < 1:844497/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 2:3923726/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 2:2491726/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTgg < 2:1454695/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGga < 1:4268882/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGga < 2:2636398/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGga < 2:1276195/93‑1 (MQ=18)
tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgag < 2:3431472/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 2:3295827/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 1:4495315/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 2:2127137/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 2:2859983/93‑1 (MQ=18)
cTGTTGCAGGTTAAGCGTGCGCTGATACCACTACT‑CCG‑‑A‑‑CCGTCTCCTACAGGGAGAGGGAGAAAAAACT‑CGAG‑GCATGCTCCTGGAGAAGGc < 2:1596728/93‑1 (MQ=12)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:2772129/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:4620925/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCGTCTCCTGGAGAAGGCCt < 2:760563/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCC‑‑ACCC‑‑TCTCCCACAGGGGGAGGGAGAAAAAACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCt > 2:1604277/1‑93 (MQ=18)
ttGCGGTTTAAGTGCGCGCTGATCCCCTCCCC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 2:814734/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:1904503/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGTCTTCTCCTGGAGAAGGCCTTGc < 1:3569633/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:3801561/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:2471310/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:1236878/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:2939972/93‑1 (MQ=18)
aaGGGCGCGCTGATGCCCTCACC‑CCGGCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:936676/93‑1 (MQ=17)
aGTGCGCGCTGGTGTCCTCACCGTCG‑‑AC‑C‑‑TCTCCGCCAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCCCCGGGAGAGGCCCTTGCTATTAgct < 2:734400/93‑3 (MQ=12)
aGTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:504056/93‑1 (MQ=18)
aGTGCGCGCGGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:2958789/93‑1 (MQ=18)
gTGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:236676/93‑1 (MQ=18)
tGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:3772101/93‑1 (MQ=21)
tGCGCGCTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:3366499/93‑1 (MQ=21)
gccgcgcAGATGCCCTCCCC‑CCG‑‑ACCC‑‑TCTCCGACAGGGATAGAGAGAAAACACA‑C‑AAGGCCTTCTCCTGGAGAAGTCCTTGCTATTAGTTGc < 2:2475745/91‑1 (MQ=255)
gcgcgcTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:682766/93‑1 (MQ=21)
cgcgcTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:3637716/93‑1 (MQ=21)
gcTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:2040369/93‑1 (MQ=21)
gcTGATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:1408232/93‑1 (MQ=21)
gATGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAgt < 2:2389347/93‑2 (MQ=25)
tGCCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAc < 1:3936794/93‑1 (MQ=25)
cccTCACC‑CCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCt < 2:1689805/93‑1 (MQ=21)
cTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTa < 2:4279387/93‑1 (MQ=25)
tCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa < 2:4464045/93‑1 (MQ=25)
ccACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCTGTACAGTACCTTaa < 2:863369/92‑1 (MQ=25)
cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:1326695/93‑1 (MQ=25)
gccc‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGa < 1:3633506/90‑1 (MQ=38)
accc‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGa < 1:1402529/90‑1 (MQ=38)
cc‑‑tctCCCACAGGGAGAGGGAGAAAACACTCC‑AG‑GCGTTCGCCTGGAGGAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata > 2:3088120/2‑93 (MQ=37)
cc‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata < 1:3186614/92‑1 (MQ=39)
cc‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata > 1:2979697/2‑93 (MQ=39)
cc‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata < 1:2859201/92‑1 (MQ=39)
cc‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata < 2:2284714/92‑1 (MQ=39)
cc‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTGCTCCTGTAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata < 2:4284422/92‑1 (MQ=38)
c‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGatat > 1:2126522/1‑93 (MQ=255)
c‑‑tctCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGatat > 2:2106175/1‑93 (MQ=255)
tctcCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATc < 2:484780/93‑1 (MQ=255)
tctcCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATc > 2:196185/1‑93 (MQ=255)
tctcCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATc < 1:2754923/93‑1 (MQ=255)
ctcCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATcc < 2:3582810/93‑1 (MQ=255)
tcCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg > 1:2500930/1‑93 (MQ=255)
tcCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg > 2:1540502/1‑93 (MQ=255)
ccACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGaa > 1:3675466/1‑93 (MQ=255)
cacaGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAAc > 1:1416010/1‑93 (MQ=255)
agggagagggagAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTgg < 2:2216831/93‑1 (MQ=255)
agggagagggagAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTgg < 1:1081728/93‑1 (MQ=255)
agggagagggagAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTgg < 2:2002035/93‑1 (MQ=255)
agggagagggagAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTgg < 2:1063886/93‑1 (MQ=255)
gggagagggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTggg < 2:3241252/93‑1 (MQ=255)
ggagagggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgt < 2:2956522/93‑1 (MQ=255)
gagagggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtg > 2:962813/1‑93 (MQ=255)
gagagggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtg < 1:1502669/93‑1 (MQ=255)
agagggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtgt < 2:1131661/93‑1 (MQ=255)
agagggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtgt > 1:4163294/1‑93 (MQ=255)
gagggagaCAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGtgtg > 2:4560337/1‑93 (MQ=255)
gagggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGtgtg > 1:1026224/1‑93 (MQ=255)
agggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGc < 1:4023189/93‑1 (MQ=255)
ggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAg < 1:4592480/93‑1 (MQ=255)
ggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAg < 2:3939911/93‑1 (MQ=255)
ggagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAg < 1:4563580/93‑1 (MQ=255)
gagaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGc > 2:3659898/1‑93 (MQ=255)
agaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCg < 1:183794/93‑1 (MQ=255)
agaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCg < 1:3598720/93‑1 (MQ=255)
gaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg > 1:3685896/1‑93 (MQ=255)
gaAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg > 2:1141631/1‑93 (MQ=255)
aaaCACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc > 1:2411811/1‑93 (MQ=255)
aaaCACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc > 1:21929/1‑93 (MQ=255)
aaaCACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc < 2:4147799/93‑1 (MQ=255)
acacT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg > 1:1781579/1‑93 (MQ=255)
acacT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg < 1:914659/93‑1 (MQ=255)
acT‑C‑AAGGCCTTCTCCTTGAGAAGGCCTTGCTATTAGTTGCGGTACAGTCCCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 1:3371484/93‑1 (MQ=255)
acT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 2:3115469/93‑1 (MQ=255)
acT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 1:1437352/93‑1 (MQ=255)
|
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACC‑CCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957034‑3957210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957034‑3957217
|
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GG < SRR4302535.4096007/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302535.1374788/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302535.2172055/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAAACTCAA‑Ggtctt > SRR4302535.773751/1‑89 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302535.992066/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302535.2623167/94‑1 (MQ=60)
AGGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302535.3418341/94‑1 (MQ=60)
AAACGTATTGCTTTTGCGGTTTAAGTGCGCGCTGAGGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.500524/94‑1 (MQ=35)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.1028894/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.192471/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.754896/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTG < SRR4302535.850427/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAG < SRR4302535.4298109/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302535.164129/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302535.4526171/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCT < SRR4302535.4224090/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302535.4652320/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302535.1918212/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302535.413993/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGTTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.28835/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGTCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.3594388/94‑1 (MQ=49)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.3437853/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.1033598/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302535.3853585/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302535.2304106/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302535.1885794/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302535.1244922/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302535.2489125/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302535.2613536/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302535.378999/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302535.507579/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302535.238311/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302535.3798121/94‑1 (MQ=60)
GCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGG < SRR4302535.687546/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302535.3662921/94‑1 (MQ=60)
GCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302535.2055064/94‑1 (MQ=60)
CTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302535.947233/94‑1 (MQ=60)
CGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGT < SRR4302535.4630892/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTA < SRR4302535.3664766/94‑1 (MQ=60)
TGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC < SRR4302535.3963648/94‑1 (MQ=60)
CGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC < SRR4302535.1416188/94‑1 (MQ=60)
CTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGTAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA < SRR4302535.2575898/94‑1 (MQ=60)
TCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAAT < SRR4302535.3650942/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.2443779/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.1336163/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.1487299/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.820150/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.2583125/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.4516102/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.1747177/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.3047238/94‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATG > SRR4302535.2016223/1‑94 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGT < SRR4302535.994321/94‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTG < SRR4302535.3746950/89‑1 (MQ=60)
gccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.3658686/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.3608560/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.3190565/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.1412537/91‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT > SRR4302535.2141853/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302535.3208651/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302535.2879455/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302535.3707738/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA > SRR4302535.3000603/3‑94 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCC < SRR4302535.2774562/94‑1 (MQ=60)
CTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCG < SRR4302535.2833734/94‑1 (MQ=60)
CTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCG > SRR4302535.2518967/1‑94 (MQ=60)
TCCCGCAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGA < SRR4302535.541852/94‑1 (MQ=60)
CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAA > SRR4302535.3700915/1‑94 (MQ=60)
CCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAAC > SRR4302535.1426118/1‑94 (MQ=60)
AGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCTGAACTGGG > SRR4302535.270142/1‑94 (MQ=60)
AGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG > SRR4302535.3414183/1‑94 (MQ=60)
AGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG < SRR4302535.1089419/94‑1 (MQ=60)
GGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGT < SRR4302535.3975286/94‑1 (MQ=60)
GAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGT > SRR4302535.4191797/1‑94 (MQ=60)
GAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGT < SRR4302535.1513479/94‑1 (MQ=60)
AGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTG > SRR4302535.1033512/1‑94 (MQ=60)
GAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGC < SRR4302535.1823416/94‑1 (MQ=60)
AGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCA < SRR4302535.4050714/94‑1 (MQ=60)
AGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCA < SRR4302535.75102/94‑1 (MQ=60)
GGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC < SRR4302535.4623741/94‑1 (MQ=60)
GGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC < SRR4302535.4594722/94‑1 (MQ=60)
AGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGG < SRR4302535.3623694/94‑1 (MQ=60)
AGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGG < SRR4302535.185059/94‑1 (MQ=60)
AGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGG > SRR4302535.3711396/1‑94 (MQ=60)
GAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG > SRR4302535.4581141/1‑94 (MQ=60)
AAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC > SRR4302535.2429171/1‑94 (MQ=60)
AAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC > SRR4302535.22092/1‑94 (MQ=60)
AACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG > SRR4302535.1794471/1‑94 (MQ=60)
ACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGG < SRR4302535.921155/94‑1 (MQ=60)
ACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGG < SRR4302535.2413665/94‑1 (MQ=60)
ACTCAAGGCCTTCTCCTTGAGAAGGCCTTGCTATTAGTTGCGGTACAGTCCCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC < SRR4302535.3394941/94‑1 (MQ=60)
ACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC < SRR4302535.1447625/94‑1 (MQ=60)
CTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTCCCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCG < SRR4302535.4362012/94‑1 (MQ=60)
TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG > SRR4302535.2050619/1‑94 (MQ=60)
TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG < SRR4302535.1164712/94‑1 (MQ=60)
TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG > SRR4302535.1666295/1‑94 (MQ=60)
aagGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT < SRR4302535.4417156/91‑1 (MQ=60)
AG‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTC > SRR4302535.1454916/1‑94 (MQ=60)
G‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC < SRR4302535.1386436/94‑1 (MQ=60)
G‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC > SRR4302535.4663979/1‑94 (MQ=60)
GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > SRR4302535.1198318/1‑94 (MQ=60)
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ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957034‑3957217
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
