Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,165	C→T	V89V (GTG→GTA)	ppiC ←	peptidyl‑prolyl cis‑trans isomerase C

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,165	0	C	T	99.7%	1302.4 / ‑5.8	372	V89V (GTG→GTA)	ppiC	peptidyl‑prolyl cis‑trans isomerase C
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (198/173); total (198/174)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.32e-01

Only 100 of 385 total aligned reads displayed.

ATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGG  >  NC_000913/3957077‑3957254

aTGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTCGCGAAGGCCTTGCTATTAGTTGCGGTACAGCa                                                                                          >  2:1372492/1‑93 (MQ=21)

     cTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTa                                                                                     >  1:722109/1‑93 (MQ=25)

      tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa                                                                                    <  2:3416009/93‑1 (MQ=25)

      tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa                                                                                    <  2:2522403/93‑1 (MQ=25)

      tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa                                                                                    >  1:7648439/1‑93 (MQ=25)

       cACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat                                                                                   >  1:1637316/1‑93 (MQ=25)

       cACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat                                                                                   >  2:5248539/1‑93 (MQ=37)

             gaccctctCCCCCAGGGGGAGGGAGAAAACACTCAAA‑GCCTTCTCCTGGAGAAGGGCTTGCTATTAGTTGCGGGACAGTACCTTAATGAtttg                                                                             >  2:2251075/5‑93 (MQ=255)

             gaccctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGGCTTGCTATTAGTTGCGGTACAGTACCTTAATGAtgtg                                                                             >  2:7565311/5‑93 (MQ=38)

              accctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGa                                                                            <  2:4433766/90‑1 (MQ=38)

              accctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGa                                                                            >  1:7716766/4‑93 (MQ=38)

              accctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGa                                                                            <  1:3379505/90‑1 (MQ=38)

               ccctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGat                                                                           <  1:2279135/91‑1 (MQ=38)

                cctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata                                                                          <  1:1109746/92‑1 (MQ=39)

                cctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata                                                                          >  1:1708125/2‑93 (MQ=39)

                cctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata                                                                          >  1:2094018/2‑93 (MQ=39)

                 ctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGatat                                                                         >  2:4808518/1‑93 (MQ=255)

                 ctctCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGatat                                                                         >  1:7339230/1‑93 (MQ=255)

                   ctcCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATcc                                                                       <  2:3925715/93‑1 (MQ=255)

                    tcCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg                                                                      <  1:7290944/93‑1 (MQ=255)

                    tcCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg                                                                      >  1:7474902/1‑93 (MQ=255)

                    tcCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg                                                                      >  1:4190471/1‑93 (MQ=255)

                    tcCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGGTGCGGTACAGTACCTTAATGATGTGATATCCg                                                                      >  1:2900624/1‑93 (MQ=255)

                    ccccACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg                                                                      <  2:5868741/92‑1 (MQ=255)

                      ccACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGaa                                                                    <  1:675440/93‑1 (MQ=255)

                      ccACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGaa                                                                    <  2:5829797/93‑1 (MQ=255)

                       cacaGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAAc                                                                   <  2:1866729/93‑1 (MQ=255)

                        acaGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACt                                                                  >  1:3592343/1‑93 (MQ=255)

                        acaGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACt                                                                  >  1:439506/1‑93 (MQ=255)

                          agggagagggagAAAACACTC‑AATGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTgg                                                                <  2:4274989/93‑1 (MQ=255)

                           gggagagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTggg                                                               <  1:3886679/93‑1 (MQ=255)

                           gggagagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTggg                                                               >  1:4215571/1‑93 (MQ=255)

                           gggagagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTggg                                                               >  1:5560521/1‑93 (MQ=255)

                           gggagagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTACTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTggg                                                               <  1:4654605/93‑1 (MQ=255)

                             gagagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtg                                                             <  1:6502674/93‑1 (MQ=255)

                             gagagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtg                                                             <  1:4976138/93‑1 (MQ=255)

                             gagagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtg                                                             >  2:2598855/1‑93 (MQ=255)

                              agagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtgt                                                            >  1:3808719/1‑93 (MQ=255)

                              agagggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtgt                                                            <  2:7219774/93‑1 (MQ=255)

                                 gggagaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCa                                                         <  1:6335355/93‑1 (MQ=255)

                                     gaAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg                                                     <  2:4500612/93‑1 (MQ=255)

                                       aagcacTC‑AAGGCGTCCTCCTGGAGACGGCATTGCTATGAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc                                                   <  1:5372885/90‑1 (MQ=255)

                                       aaaCACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc                                                   >  1:5500478/1‑93 (MQ=255)

                                       aaaCACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc                                                   >  2:6108260/1‑93 (MQ=255)

                                       aaaCACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc                                                   >  1:7512297/1‑93 (MQ=255)

                                       aaaCACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGCGGGGCAGCGGGc                                                   >  1:2471842/1‑93 (MQ=255)

                                         acacTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg                                                 <  2:5474092/93‑1 (MQ=255)

                                          cacTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCgg                                                >  2:1683118/1‑93 (MQ=255)

                                           acTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt                                               <  2:2117424/93‑1 (MQ=255)

                                            cTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc                                              >  2:958030/1‑93 (MQ=255)

                                                aaggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGc                                           >  2:1176033/4‑93 (MQ=255)

                                                 aggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTCGGTGTGCAGCGGGCCGGTCGGCt                                          >  2:4298993/3‑93 (MQ=255)

                                                  ggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTc                                         >  2:4044649/2‑93 (MQ=255)

                                                  ggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTc                                         >  1:5088601/2‑93 (MQ=255)

                                                   gCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTcc                                        <  1:5719506/93‑1 (MQ=255)

                                                   gCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTcc                                        >  2:7893679/1‑93 (MQ=255)

                                                    ccTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCa                                       <  1:6157104/93‑1 (MQ=255)

                                                    ccTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCa                                       <  1:4756836/93‑1 (MQ=255)

                                                     cTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAg                                      <  2:1939713/93‑1 (MQ=255)

                                                     cTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAg                                      >  1:3119567/1‑93 (MQ=255)

                                                     cTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAg                                      <  1:3251358/93‑1 (MQ=255)

                                                      ttCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGt                                     >  1:997001/1‑93 (MQ=255)

                                                       tctcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTa                                    >  1:7035870/1‑93 (MQ=255)

                                                         tcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTAcc                                  >  1:7868876/1‑93 (MQ=255)

                                                             ggAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGaa                              >  1:2657489/1‑92 (MQ=255)

                                                               agaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACaa                            <  2:3148480/93‑1 (MQ=255)

                                                               agaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACaa                            >  1:3345208/1‑93 (MQ=255)

                                                                gaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAag                           >  2:1517121/1‑93 (MQ=255)

                                                                gaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAag                           >  1:1853281/1‑93 (MQ=255)

                                                                 aaGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAaga                          >  1:3137233/1‑93 (MQ=255)

                                                                 aaGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAaga                          >  1:3559149/1‑93 (MQ=255)

                                                                   ggCCTTGCTATTAGTTGTGGCACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAgaga                        >  1:6031266/1‑93 (MQ=255)

                                                                    gCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaa                       >  2:2870479/1‑93 (MQ=255)

                                                                     ccTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaa                      >  1:1002653/1‑93 (MQ=255)

                                                                      cTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaaa                     >  2:5120443/1‑93 (MQ=255)

                                                                      cTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaaa                     >  1:5159689/1‑93 (MQ=255)

                                                                         gCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCa                  >  1:928877/1‑93 (MQ=255)

                                                                          cTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAc                 >  1:1477933/1‑93 (MQ=255)

                                                                          cTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAc                 <  2:2745536/93‑1 (MQ=255)

                                                                          cTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAc                 <  2:7757420/93‑1 (MQ=255)

                                                                          cTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAc                 >  2:1461823/1‑93 (MQ=255)

                                                                            aTTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACtt               <  2:6986390/93‑1 (MQ=255)

                                                                            aTTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACtt               >  2:8869/1‑93 (MQ=255)

                                                                            aTTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACtt               <  2:4617293/93‑1 (MQ=255)

                                                                             ttAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACttt              >  2:6386984/1‑93 (MQ=255)

                                                                             ttAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACttt              <  1:2035935/93‑1 (MQ=255)

                                                                              tAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTa             <  2:5667471/93‑1 (MQ=255)

                                                                              tAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTa             <  1:4057616/93‑1 (MQ=255)

                                                                                gTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATc           >  1:693438/1‑93 (MQ=255)

                                                                                gTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATc           <  2:2390838/93‑1 (MQ=255)

                                                                                 ttGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTCCCGGCCAAGAGAAAACCACTTTATca          >  1:282349/1‑92 (MQ=255)

                                                                                 ttGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCg          >  1:1338999/1‑93 (MQ=255)

                                                                                 ttGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCg          >  2:4936082/1‑93 (MQ=255)

                                                                                   gCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGaa        >  2:6180874/1‑93 (MQ=255)

                                                                                   gCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGaa        <  2:6561232/93‑1 (MQ=255)

                                                                                    cGGTACAGTACGTTACTGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAAc       <  2:3808877/93‑1 (MQ=255)

                                                                                     ggTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACg      >  2:7319981/1‑93 (MQ=255)

                                                                                     ggTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACg      <  2:3073772/93‑1 (MQ=255)

                                                                                      gTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGc     >  1:5285600/1‑93 (MQ=255)

                                                                                       tACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGcc    >  1:3085028/1‑93 (MQ=255)

ATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGG  >  NC_000913/3957077‑3957254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 232 total aligned reads displayed.

TGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAAC  >  NC_000913/3957075‑3957257

TGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGT                                                                                              <  SRR4302543.7543732/94‑1 (MQ=60)

 GATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTA                                                                                             <  SRR4302543.3385563/94‑1 (MQ=60)

  ATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAC                                                                                            <  SRR4302543.6561730/94‑1 (MQ=60)

   TGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC                                                                                           <  SRR4302543.6533330/94‑1 (MQ=60)

     CCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTT                                                                                         <  SRR4302543.3484691/94‑1 (MQ=60)

      CCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA                                                                                        <  SRR4302543.3216931/94‑1 (MQ=60)

      CCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA                                                                                        >  SRR4302543.728624/1‑94 (MQ=60)

      CCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA                                                                                        >  SRR4302543.3614555/1‑94 (MQ=60)

      CCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA                                                                                        >  SRR4302543.7974190/1‑94 (MQ=60)

       CTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA                                                                                       >  SRR4302543.7720959/1‑94 (MQ=60)

       CTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA                                                                                       >  SRR4302543.5307675/1‑94 (MQ=60)

       CTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA                                                                                       >  SRR4302543.2763231/1‑94 (MQ=60)

        cccccccgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAAT                                                                                      <  SRR4302543.5655231/83‑1 (MQ=60)

        TCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAAT                                                                                      >  SRR4302543.1651924/1‑94 (MQ=60)

         CACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG                                                                                     >  SRR4302543.4784970/1‑94 (MQ=60)

          cccccgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGA                                                                                    <  SRR4302543.650515/85‑1 (MQ=60)

           CCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                   <  SRR4302543.368378/94‑1 (MQ=60)

           CCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                   <  SRR4302543.7530265/94‑1 (MQ=60)

           CCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                   >  SRR4302543.2794093/1‑94 (MQ=60)

           CCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                   <  SRR4302543.3912960/94‑1 (MQ=60)

           CCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAAAGTACCTTAATGAT                                                                                   >  SRR4302543.2794092/1‑94 (MQ=60)

            CCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATG                                                                                  <  SRR4302543.1437286/94‑1 (MQ=60)

            CCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATG                                                                                  <  SRR4302543.4802131/94‑1 (MQ=60)

              cgaccCTCTCCCACAGGGAGAGTGAGAAACCACTCAA‑GCCCTTCTCCTGGAGAAGCCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTG                                                                                <  SRR4302543.56592/89‑1 (MQ=60)

              cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTG                                                                                <  SRR4302543.7660665/89‑1 (MQ=60)

               gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGA                                                                               >  SRR4302543.7789746/5‑94 (MQ=60)

                accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT                                                                              <  SRR4302543.2113585/91‑1 (MQ=60)

                accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT                                                                              <  SRR4302543.3409831/91‑1 (MQ=60)

                accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT                                                                              <  SRR4302543.3966464/91‑1 (MQ=60)

                C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                            <  SRR4302543.6343516/94‑1 (MQ=60)

                C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                            <  SRR4302543.1119761/94‑1 (MQ=60)

                C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                            <  SRR4302543.3869823/94‑1 (MQ=60)

                C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                            >  SRR4302543.7409835/1‑94 (MQ=60)

                 ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA                                                                             >  SRR4302543.2112731/3‑94 (MQ=60)

                 ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA                                                                             <  SRR4302543.2299976/92‑1 (MQ=60)

                 ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA                                                                             <  SRR4302543.4340073/92‑1 (MQ=60)

                 ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA                                                                             >  SRR4302543.2112732/3‑94 (MQ=60)

                 ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA                                                                             >  SRR4302543.1596285/3‑94 (MQ=60)

                   CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATC                                                                           >  SRR4302543.7418397/1‑94 (MQ=60)

                   CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATC                                                                           <  SRR4302543.700984/94‑1 (MQ=60)

                   CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTCGCGGTACAGTACCTTAATGATGTGATATC                                                                           >  SRR4302543.5122537/1‑94 (MQ=60)

                   CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCCCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATC                                                                           >  SRR4302543.6987013/1‑94 (MQ=60)

                     CTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCG                                                                         >  SRR4302543.7546472/1‑94 (MQ=60)

                     CTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCG                                                                         >  SRR4302543.7546471/1‑94 (MQ=60)

                     CTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGGTGCGGTACAGTACCTTAATGATGTGATATCCG                                                                         >  SRR4302543.2926995/1‑94 (MQ=60)

                      TCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGA                                                                        <  SRR4302543.7361313/94‑1 (MQ=60)

                       CCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAA                                                                       >  SRR4302543.1672230/1‑94 (MQ=60)

                       CCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAA                                                                       >  SRR4302543.3389259/1‑94 (MQ=60)

                        CCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAAC                                                                      <  SRR4302543.3407883/94‑1 (MQ=60)

                        CCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAAC                                                                      <  SRR4302543.4114382/94‑1 (MQ=60)

                         CACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACT                                                                     >  SRR4302543.3624054/1‑94 (MQ=60)

                         CACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACT                                                                     >  SRR4302543.1111413/1‑94 (MQ=60)

                          ACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTG                                                                    >  SRR4302543.774077/1‑94 (MQ=60)

                          ACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTG                                                                    >  SRR4302543.1671873/1‑94 (MQ=60)

                           CAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGG                                                                   <  SRR4302543.4169972/94‑1 (MQ=60)

                            AGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG                                                                  >  SRR4302543.5611087/1‑94 (MQ=60)

                            AGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG                                                                  >  SRR4302543.5611085/1‑94 (MQ=60)

                            AGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG                                                                  >  SRR4302543.4253794/1‑94 (MQ=60)

                            AGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG                                                                  <  SRR4302543.3849099/94‑1 (MQ=60)

                             GGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGT                                                                 <  SRR4302543.3920989/94‑1 (MQ=60)

                             GGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGT                                                                 >  SRR4302543.729251/1‑94 (MQ=60)

                             GGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTACTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGT                                                                 <  SRR4302543.4696991/94‑1 (MQ=60)

                               GAGAGGGAGAAAACCCTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGT                                                               <  SRR4302543.3128441/94‑1 (MQ=60)

                               GAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGT                                                               >  SRR4302543.2472915/1‑94 (MQ=60)

                               GAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGT                                                               <  SRR4302543.5021432/94‑1 (MQ=60)

                               GAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGT                                                               <  SRR4302543.6563930/94‑1 (MQ=60)

                                AGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTTGGTGTG                                                              <  SRR4302543.3744071/94‑1 (MQ=60)

                                AGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTG                                                              <  SRR4302543.4574551/94‑1 (MQ=60)

                                AGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTG                                                              <  SRR4302543.7598112/94‑1 (MQ=60)

                                  AGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCA                                                            <  SRR4302543.7408943/94‑1 (MQ=60)

                                   GGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAG                                                           <  SRR4302543.6394936/94‑1 (MQ=60)

                                    GGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC                                                          <  SRR4302543.7639659/94‑1 (MQ=60)

                                     GAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCG                                                         <  SRR4302543.2092124/94‑1 (MQ=60)

                                       GAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGCACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG                                                       <  SRR4302543.938636/94‑1 (MQ=60)

                                        AAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC                                                      <  SRR4302543.1732065/94‑1 (MQ=60)

                                        AAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC                                                      >  SRR4302543.7584053/1‑94 (MQ=60)

                                        AAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC                                                      >  SRR4302543.5550390/1‑94 (MQ=60)

                                        AAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGCGGGGCAGCGGGC                                                      >  SRR4302543.2494160/1‑94 (MQ=60)

                                         AACCACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCC                                                     <  SRR4302543.1694374/94‑1 (MQ=60)

                                         AAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCC                                                     <  SRR4302543.7857223/94‑1 (MQ=60)

                                          aagcactcaaggcgtcCTCCTGGAGACGGCATTGCTATGAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCC                                                     <  SRR4302543.5421545/78‑1 (MQ=60)

                                          AACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCGG                                                    >  SRR4302543.2604499/1‑94 (MQ=60)

                                          AACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCCTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG                                                    <  SRR4302543.4944904/94‑1 (MQ=60)

                                           ACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGG                                                   <  SRR4302543.4232376/94‑1 (MQ=60)

                                             ACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC                                                 >  SRR4302543.4160380/1‑94 (MQ=60)

                                             ACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC                                                 <  SRR4302543.5071758/94‑1 (MQ=60)

                                             ACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC                                                 >  SRR4302543.5403770/1‑94 (MQ=60)

                                             ACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC                                                 <  SRR4302543.3135939/94‑1 (MQ=60)

                                              CTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTTG                                                >  SRR4302543.1982546/1‑94 (MQ=60)

                                                CAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC                                              >  SRR4302543.6157268/1‑94 (MQ=60)

                                                 AG‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTC                                            >  SRR4302543.5134720/1‑94 (MQ=60)

                                                  G‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC                                           >  SRR4302543.4538423/1‑94 (MQ=60)

                                                  G‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC                                           <  SRR4302543.4039095/94‑1 (MQ=60)

                                                  G‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC                                           >  SRR4302543.3874285/1‑94 (MQ=60)

                                                    G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA                                          <  SRR4302543.5771695/94‑1 (MQ=60)

                                                      CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAG                                         >  SRR4302543.3147628/1‑94 (MQ=60)

                                                      CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAG                                         >  SRR4302543.7132707/1‑94 (MQ=60)

                                                      CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAG                                         >  SRR4302543.3826671/1‑94 (MQ=60)

                                                       CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGT                                        <  SRR4302543.5206152/94‑1 (MQ=60)

                                                       CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGT                                        >  SRR4302543.5750258/1‑94 (MQ=60)

                                                       CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGT                                        >  SRR4302543.1005808/1‑94 (MQ=60)

                                                        TTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTA                                       >  SRR4302543.7564359/1‑94 (MQ=60)

                                                        TTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTA                                       >  SRR4302543.7255267/1‑94 (MQ=60)

                                                        TTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTA                                       >  SRR4302543.7103637/1‑94 (MQ=60)

                                                          CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                     >  SRR4302543.7812906/1‑94 (MQ=60)

                                                          CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                     >  SRR4302543.1231803/1‑94 (MQ=60)

                                                          CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                     >  SRR4302543.7942970/1‑94 (MQ=60)

                                                          CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                     <  SRR4302543.901116/94‑1 (MQ=60)

                                                          CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATATGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                     <  SRR4302543.1724920/94‑1 (MQ=60)

                                                           TCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCG                                    >  SRR4302543.1942922/1‑94 (MQ=60)

                                                            CCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGG                                   >  SRR4302543.6343741/1‑94 (MQ=60)

                                                            CCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGG                                   >  SRR4302543.4249379/1‑94 (MQ=60)

                                                             CTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGA                                  <  SRR4302543.3777656/94‑1 (MQ=60)

                                                             CTGGAGAAGGCCTGGCTATTAGTTGCGGTACAGTACGTTAAGGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGA                                  <  SRR4302543.3777654/94‑1 (MQ=60)

                                                              TGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGAA                                 >  SRR4302543.2681581/1‑94 (MQ=60)

                                                               GGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACA                                <  SRR4302543.5489683/94‑1 (MQ=60)

                                                               GGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACA                                >  SRR4302543.6141551/1‑94 (MQ=60)

                                                               GGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACA                                >  SRR4302543.7792160/1‑94 (MQ=60)

                                                                GAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAA                               >  SRR4302543.3375326/1‑94 (MQ=60)

                                                                GAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAA                               >  SRR4302543.3375327/1‑94 (MQ=60)

                                                                 AGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAG                              >  SRR4302543.6575138/1‑94 (MQ=60)

                                                                 AGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAG                              >  SRR4302543.1869944/1‑94 (MQ=60)

                                                                 AGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAG                              >  SRR4302543.7503576/1‑94 (MQ=60)

                                                                 AGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAG                              <  SRR4302543.3341629/94‑1 (MQ=60)

                                                                  GAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCTGTCGGCTCCAGTACCGGACAAGA                             <  SRR4302543.4786241/94‑1 (MQ=60)

                                                                  GAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGA                             <  SRR4302543.291537/94‑1 (MQ=60)

                                                                  GAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGA                             >  SRR4302543.3165451/1‑94 (MQ=60)

                                                                  GAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGA                             >  SRR4302543.3165449/1‑94 (MQ=60)

                                                                  GAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGA                             >  SRR4302543.3590672/1‑94 (MQ=60)

                                                                  GAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGA                             >  SRR4302543.3165450/1‑94 (MQ=60)

                                                                   AAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAG                            <  SRR4302543.2668904/94‑1 (MQ=60)

                                                                    AGGCCTTGCTATTAGTTGTGGCACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGA                           >  SRR4302543.6087733/1‑94 (MQ=60)

                                                                    AGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGACCTGGGTGTGCAGCGGGCCGGCCGGCTCCAGTACCGGACCAGAGA                           >  SRR4302543.884897/1‑94 (MQ=60)

                                                                    AGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGA                           >  SRR4302543.7352074/1‑94 (MQ=60)

                                                                    AGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGA                           >  SRR4302543.4868275/1‑94 (MQ=60)

                                                                      GCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAA                         >  SRR4302543.1011515/1‑94 (MQ=60)

                                                                      GCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAA                         <  SRR4302543.4239229/94‑1 (MQ=60)

                                                                      GCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAA                         >  SRR4302543.1011516/1‑94 (MQ=60)

                                                                       CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAATAGAAAA                        <  SRR4302543.3272178/94‑1 (MQ=60)

                                                                       CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAA                        <  SRR4302543.7400663/94‑1 (MQ=60)

                                                                       CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAA                        >  SRR4302543.5206316/1‑94 (MQ=60)

                                                                       CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACAGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAA                        <  SRR4302543.5388332/94‑1 (MQ=60)

                                                                        CTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGTGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAC                       >  SRR4302543.3169597/1‑94 (MQ=60)

                                                                        CTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAC                       >  SRR4302543.684144/1‑94 (MQ=60)

                                                                        CTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAC                       >  SRR4302543.556942/1‑94 (MQ=60)

                                                                         TTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACC                      <  SRR4302543.1566947/94‑1 (MQ=60)

                                                                          TGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCA                     >  SRR4302543.936996/1‑94 (MQ=60)

                                                                           GCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAC                    <  SRR4302543.5786354/94‑1 (MQ=60)

                                                                           GCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAC                    <  SRR4302543.5990391/94‑1 (MQ=60)

                                                                           GCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAC                    <  SRR4302543.5012565/94‑1 (MQ=60)

                                                                           GCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCAC                    >  SRR4302543.1491253/1‑94 (MQ=60)

                                                                            CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                   >  SRR4302543.4709161/1‑94 (MQ=60)

                                                                            CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                   <  SRR4302543.177349/94‑1 (MQ=60)

                                                                            CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                   >  SRR4302543.7680660/1‑94 (MQ=60)

                                                                            CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                   >  SRR4302543.3458402/1‑94 (MQ=60)

                                                                            CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                   >  SRR4302543.6681892/1‑94 (MQ=60)

                                                                            CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                   >  SRR4302543.4010188/1‑94 (MQ=60)

                                                                            CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                   <  SRR4302543.517143/94‑1 (MQ=60)

                                                                             TATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTT                  >  SRR4302543.557487/1‑94 (MQ=60)

                                                                             TATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTT                  >  SRR4302543.2442171/1‑94 (MQ=60)

                                                                              ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTT                 >  SRR4302543.1424443/1‑94 (MQ=60)

                                                                              ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTT                 <  SRR4302543.1455747/94‑1 (MQ=60)

                                                                              ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTT                 <  SRR4302543.1467506/94‑1 (MQ=60)

                                                                              ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTT                 <  SRR4302543.5160463/94‑1 (MQ=60)

                                                                              ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTT                 >  SRR4302543.7568214/1‑94 (MQ=60)

                                                                               TTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTA                <  SRR4302543.6890553/94‑1 (MQ=60)

                                                                               TTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTA                <  SRR4302543.2054212/94‑1 (MQ=60)

                                                                                TAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT               <  SRR4302543.7743141/94‑1 (MQ=60)

                                                                                TAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT               <  SRR4302543.4093944/94‑1 (MQ=60)

                                                                                TAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT               >  SRR4302543.2879177/1‑94 (MQ=60)

                                                                                 AGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATC              >  SRR4302543.699796/1‑94 (MQ=60)

                                                                                  GTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTCCCGGCCAAGAGAAAACCACTTTATCA             >  SRR4302543.284853/1‑94 (MQ=60)

                                                                                  GTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCG             >  SRR4302543.2162720/1‑94 (MQ=60)

                                                                                  GTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCG             <  SRR4302543.5738245/94‑1 (MQ=60)

                                                                                  GTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCG             >  SRR4302543.1350953/1‑94 (MQ=60)

                                                                                  GTGGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCG             >  SRR4302543.7098087/1‑94 (MQ=60)

                                                                                    TGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGCA           >  SRR4302543.286838/1‑94 (MQ=60)

                                                                                    TGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAA           <  SRR4302543.2331098/94‑1 (MQ=60)

                                                                                    TGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAA           <  SRR4302543.7238533/94‑1 (MQ=60)

                                                                                     GCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAAC          <  SRR4302543.4745468/94‑1 (MQ=60)

                                                                                     GCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAAC          <  SRR4302543.6166754/94‑1 (MQ=60)

                                                                                      CGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGTCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACG         <  SRR4302543.2062089/94‑1 (MQ=60)

                                                                                       GGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACACGAGAAAACCACTTTATCGAACGC        <  SRR4302543.5294933/94‑1 (MQ=60)

                                                                                       GGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGC        >  SRR4302543.6575468/1‑94 (MQ=60)

                                                                                       GGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGC        >  SRR4302543.2747418/1‑94 (MQ=60)

                                                                                       GGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGC        >  SRR4302543.5333305/1‑94 (MQ=60)

                                                                                       GGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGC        <  SRR4302543.2945777/94‑1 (MQ=60)

                                                                                        GTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCC       <  SRR4302543.554258/94‑1 (MQ=60)

                                                                                        GTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCC       >  SRR4302543.3112770/1‑94 (MQ=60)

                                                                                        GTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCC       >  SRR4302543.3112772/1‑94 (MQ=60)

                                                                                        GTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCC       >  SRR4302543.345989/1‑94 (MQ=60)

                                                                                         TACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCG      >  SRR4302543.6496265/1‑94 (MQ=60)

                                                                                         TACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCG      >  SRR4302543.3317801/1‑94 (MQ=60)

                                                                                         TACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGACAAAACCACTTTATCGAACGCCG      >  SRR4302543.6355592/1‑94 (MQ=60)

                                                                                          ACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGG     <  SRR4302543.1232621/94‑1 (MQ=60)

                                                                                          ACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACAGGACAAGAGAAAACCACTTTATCGAACGCCGG     >  SRR4302543.4281215/1‑94 (MQ=60)

                                                                                            AGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAA   >  SRR4302543.6236179/1‑94 (MQ=60)

                                                                                             GTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAAC  <  SRR4302543.3122195/94‑1 (MQ=60)

                                                                                             GTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAAC  >  SRR4302543.6206635/1‑94 (MQ=60)

                                                                                             GTACCTTAATGATGAGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAAC  <  SRR4302543.3122196/94‑1 (MQ=60)

TGATGCCCTCACCCCGA‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAAC  >  NC_000913/3957075‑3957257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`