Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,165	C→T	V89V (GTG→GTA)	ppiC ←	peptidyl‑prolyl cis‑trans isomerase C

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,165	0	C	T	100.0%	799.7 / NA	230	V89V (GTG→GTA)	ppiC	peptidyl‑prolyl cis‑trans isomerase C
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (97/133); total (97/133)

Only 100 of 232 total aligned reads displayed.

TGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACT‑CAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGG  >  NC_000913/3957078‑3957254

tGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAc                                                                                         <  1:3936794/93‑1 (MQ=25)

cgCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAc                                                                                         <  1:1406140/92‑1 (MQ=25)

  cccTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCt                                                                                       <  2:1689805/93‑1 (MQ=21)

  cccTCACCCCG‑‑ACCCTCTCCGACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCt                                                                                       <  2:2985590/93‑1 (MQ=25)

    cTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTa                                                                                     <  2:4279387/93‑1 (MQ=25)

     tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa                                                                                    <  1:3625814/93‑1 (MQ=25)

     tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa                                                                                    <  2:2362953/93‑1 (MQ=25)

      cACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat                                                                                   <  1:1476726/93‑1 (MQ=25)

      cACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat                                                                                   <  1:814439/93‑1 (MQ=25)

      cACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat                                                                                   <  1:1326695/93‑1 (MQ=25)

              gaccctctCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAtgtg                                                                             >  2:2887277/5‑93 (MQ=38)

               accctctCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGa                                                                            >  2:787722/4‑93 (MQ=38)

               accctctCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGa                                                                            <  1:3583705/90‑1 (MQ=38)

                 cctctCCCACAGGGAGAGGGAGAAAACACTCCAG‑GCGTTCGCCTGGAGGAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata                                                                          >  2:3088120/2‑93 (MQ=37)

                 cctctCCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGata                                                                          <  2:2284714/92‑1 (MQ=39)

                    ctcCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATcc                                                                       <  2:3582810/93‑1 (MQ=255)

                     tcCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg                                                                      >  2:1540502/1‑93 (MQ=255)

                     tcCCACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCg                                                                      >  2:4092667/1‑93 (MQ=255)

                       ccACAGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGaa                                                                    >  1:3675466/1‑93 (MQ=255)

                        cacaGGGAGAGGGAGAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAAc                                                                   <  2:849761/93‑1 (MQ=255)

                           agggagagggagAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTgg                                                                <  2:2216831/93‑1 (MQ=255)

                           agggagagggagAAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTgg                                                                <  1:1081728/93‑1 (MQ=255)

                            gggagagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTggg                                                               >  1:3390595/1‑93 (MQ=255)

                            gggagagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTggg                                                               <  2:3241252/93‑1 (MQ=255)

                             ggagagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgt                                                              <  2:2956522/93‑1 (MQ=255)

                              gagagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtg                                                             <  2:562450/93‑1 (MQ=255)

                               agagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtgt                                                            <  2:1131661/93‑1 (MQ=255)

                               agagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtgt                                                            >  2:2090383/1‑93 (MQ=255)

                               agagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGgtgt                                                            >  1:4163294/1‑93 (MQ=255)

                                gagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGtgtg                                                           >  1:1026224/1‑93 (MQ=255)

                                gagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGtgtg                                                           >  2:905227/1‑93 (MQ=255)

                                gagggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGtgtg                                                           <  1:1810322/93‑1 (MQ=255)

                                 agggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGc                                                          <  1:4023189/93‑1 (MQ=255)

                                  gggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGGACCTTAATGATGTGATATCCGAACTGGGTGTGCa                                                         >  2:1998943/1‑93 (MQ=255)

                                   ggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAg                                                        <  1:4592480/93‑1 (MQ=255)

                                   ggagaAAACACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAg                                                        <  1:4563580/93‑1 (MQ=255)

                                      gaAACCACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGTAGCgg                                                     <  2:3615522/93‑1 (MQ=255)

                                        aaaCACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc                                                   <  2:4147799/93‑1 (MQ=255)

                                        aaaCACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc                                                   >  1:21929/1‑93 (MQ=255)

                                        aaaCACT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc                                                   >  1:2411811/1‑93 (MQ=255)

                                            acT‑CAAGGCCTTCTCCTTGAGAAGGCCTTGCTATTAGTTGCGGTACAGTCCCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt                                               <  1:3371484/93‑1 (MQ=255)

                                            acT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt                                               <  1:1437352/93‑1 (MQ=255)

                                            acT‑CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt                                               <  2:3115469/93‑1 (MQ=255)

                                                caaggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCgg                                            >  1:2035954/5‑93 (MQ=255)

                                                caaggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCgg                                            >  1:1654326/5‑93 (MQ=255)

                                                    gCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTcc                                        <  2:3372912/93‑1 (MQ=255)

                                                      cTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAg                                      >  1:4248884/1‑93 (MQ=255)

                                                      cTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAg                                      <  1:390727/93‑1 (MQ=255)

                                                       ttCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGt                                     >  2:3129384/1‑93 (MQ=255)

                                                       ttCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGt                                     >  2:1527761/1‑93 (MQ=255)

                                                        tctcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTa                                    <  2:4404995/93‑1 (MQ=255)

                                                         ctcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTAc                                   <  1:4472283/93‑1 (MQ=255)

                                                         ctcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTAc                                   <  2:2702506/93‑1 (MQ=255)

                                                          tcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTAcc                                  >  2:3162280/1‑93 (MQ=255)

                                                             tGGAGAATGCTTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGa                               <  1:3295114/93‑1 (MQ=255)

                                                             tGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGa                               >  1:997174/1‑93 (MQ=255)

                                                             tGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGa                               <  2:3484048/93‑1 (MQ=255)

                                                              ggAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGAc                              <  2:187962/93‑1 (MQ=255)

                                                               gagaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACa                             >  2:1256349/1‑93 (MQ=255)

                                                               gagaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACa                             >  1:2264023/1‑93 (MQ=255)

                                                                agaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACaa                            <  2:2688873/93‑1 (MQ=255)

                                                                agaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACaa                            <  1:775854/93‑1 (MQ=255)

                                                                 gaAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAag                           <  2:733634/93‑1 (MQ=255)

                                                                  aaGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAaga                          <  2:4500881/93‑1 (MQ=255)

                                                                   aGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAagag                         >  1:269308/1‑93 (MQ=255)

                                                                   aGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAagag                         >  1:2596677/1‑93 (MQ=255)

                                                                   aGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAagag                         <  1:3353918/93‑1 (MQ=255)

                                                                    ggCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAgaga                        >  1:4037559/1‑93 (MQ=255)

                                                                     gCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaa                       <  2:3992957/93‑1 (MQ=255)

                                                                     gCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaa                       >  1:3105376/1‑93 (MQ=255)

                                                                      ccTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaa                      >  2:2578932/1‑93 (MQ=255)

                                                                      ccTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaa                      <  1:3725592/93‑1 (MQ=255)

                                                                       cTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaaa                     >  1:1770364/1‑93 (MQ=255)

                                                                       cTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaaa                     <  2:3853034/93‑1 (MQ=255)

                                                                       cTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaaa                     <  2:133512/93‑1 (MQ=255)

                                                                        ttGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAc                    >  1:2323709/1‑93 (MQ=255)

                                                                          gCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCa                  <  2:63130/93‑1 (MQ=255)

                                                                            tATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACt                >  2:1950765/1‑93 (MQ=255)

                                                                            tATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACt                >  1:4649251/1‑93 (MQ=255)

                                                                            tATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACt                >  1:2983349/1‑93 (MQ=255)

                                                                            tATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACt                <  1:2170607/93‑1 (MQ=255)

                                                                             aTTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACtt               >  1:3235856/1‑93 (MQ=255)

                                                                             aTTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACtt               >  2:482365/1‑93 (MQ=255)

                                                                             aTTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG‑CGGTCCGGTTCCGTAACCGGCAAGAGAAAACCACttt              >  2:119644/1‑93 (MQ=255)

                                                                              ttAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACttt              <  2:334424/93‑1 (MQ=255)

                                                                              ttAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACttt              >  1:340787/1‑93 (MQ=255)

                                                                              ttAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGCCTCCAGTACCGGACAAGAGAAAACCACttt              >  1:737955/1‑93 (MQ=255)

                                                                               tAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTa             <  2:2181587/93‑1 (MQ=255)

                                                                               tAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTa             <  1:60358/93‑1 (MQ=255)

                                                                               tAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTa             <  1:564163/93‑1 (MQ=255)

                                                                               tAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGAGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTa             <  1:3305661/93‑1 (MQ=255)

                                                                                 gTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATc           >  1:1983428/1‑93 (MQ=255)

                                                                                 gTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATc           <  1:2755365/93‑1 (MQ=255)

                                                                                  ttGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCg          >  2:4561075/1‑93 (MQ=255)

                                                                                     cGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAAc       <  1:1543247/93‑1 (MQ=255)

                                                                                     cGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAAc       <  1:1189062/93‑1 (MQ=255)

                                                                                      ggTACAGTACCTTAATGATGTGATATCCCAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACg      >  1:2461930/1‑93 (MQ=255)

                                                                                         aCAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCg   <  1:2939032/93‑1 (MQ=255)

                                                                                         aCAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCg   >  1:4338831/1‑93 (MQ=255)

                                                                                          cAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCgg  <  2:2157/93‑1 (MQ=255)

TGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACT‑CAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGG  >  NC_000913/3957078‑3957254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACC  >  NC_000913/3957075‑3957258

CGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGT                                                                                               <  SRR4302535.4630892/94‑1 (MQ=60)

 GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTA                                                                                              <  SRR4302535.3664766/94‑1 (MQ=60)

   TGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC                                                                                            <  SRR4302535.3963648/94‑1 (MQ=60)

   CGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC                                                                                            <  SRR4302535.1416188/94‑1 (MQ=60)

       CTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGTAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA                                                                                        <  SRR4302535.2575898/94‑1 (MQ=60)

        TCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAAT                                                                                       <  SRR4302535.3650942/94‑1 (MQ=60)

         CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG                                                                                      <  SRR4302535.2443779/94‑1 (MQ=60)

         CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG                                                                                      <  SRR4302535.1487299/94‑1 (MQ=60)

         CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG                                                                                      <  SRR4302535.1336163/94‑1 (MQ=60)

         CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG                                                                                      <  SRR4302535.820150/94‑1 (MQ=60)

           CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                    <  SRR4302535.2583125/94‑1 (MQ=60)

           CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                    <  SRR4302535.4516102/94‑1 (MQ=60)

           CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                    <  SRR4302535.3047238/94‑1 (MQ=60)

           CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT                                                                                    <  SRR4302535.1747177/94‑1 (MQ=60)

            CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATG                                                                                   >  SRR4302535.2016223/1‑94 (MQ=60)

             CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGT                                                                                  <  SRR4302535.994321/94‑1 (MQ=60)

                cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTG                                                                                 <  SRR4302535.3746950/89‑1 (MQ=60)

                  gccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT                                                                               <  SRR4302535.3658686/91‑1 (MQ=60)

                  accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT                                                                               <  SRR4302535.3608560/91‑1 (MQ=60)

                  accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT                                                                               <  SRR4302535.3190565/91‑1 (MQ=60)

                  accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT                                                                               <  SRR4302535.1412537/91‑1 (MQ=60)

                  C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                             <  SRR4302535.3208651/94‑1 (MQ=60)

                  C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                             <  SRR4302535.3707738/94‑1 (MQ=60)

                  C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                             <  SRR4302535.2879455/94‑1 (MQ=60)

                  C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT                                                                             >  SRR4302535.2141853/1‑94 (MQ=60)

                   ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA                                                                              >  SRR4302535.3000603/3‑94 (MQ=60)

                      TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCC                                                                           <  SRR4302535.2774562/94‑1 (MQ=60)

                       CTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCG                                                                          <  SRR4302535.2833734/94‑1 (MQ=60)

                       CTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCG                                                                          >  SRR4302535.2518967/1‑94 (MQ=60)

                        TCCCGCAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGA                                                                         <  SRR4302535.541852/94‑1 (MQ=60)

                         CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAA                                                                        >  SRR4302535.3700915/1‑94 (MQ=60)

                          CCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAAC                                                                       >  SRR4302535.1426118/1‑94 (MQ=60)

                              AGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCTGAACTGGG                                                                   >  SRR4302535.270142/1‑94 (MQ=60)

                              AGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG                                                                   <  SRR4302535.1089419/94‑1 (MQ=60)

                              AGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGG                                                                   >  SRR4302535.3414183/1‑94 (MQ=60)

                               GGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGT                                                                  <  SRR4302535.3975286/94‑1 (MQ=60)

                                 GAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGT                                                                <  SRR4302535.1513479/94‑1 (MQ=60)

                                 GAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGT                                                                >  SRR4302535.4191797/1‑94 (MQ=60)

                                  AGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTG                                                               >  SRR4302535.1033512/1‑94 (MQ=60)

                                   GAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGC                                                              <  SRR4302535.1823416/94‑1 (MQ=60)

                                    AGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCA                                                             <  SRR4302535.75102/94‑1 (MQ=60)

                                    AGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCA                                                             <  SRR4302535.4050714/94‑1 (MQ=60)

                                      GGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC                                                           <  SRR4302535.4623741/94‑1 (MQ=60)

                                      GGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGC                                                           <  SRR4302535.4594722/94‑1 (MQ=60)

                                        AGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGG                                                         <  SRR4302535.3623694/94‑1 (MQ=60)

                                        AGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGG                                                         >  SRR4302535.3711396/1‑94 (MQ=60)

                                        AGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGG                                                         <  SRR4302535.185059/94‑1 (MQ=60)

                                         GAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG                                                        >  SRR4302535.4581141/1‑94 (MQ=60)

                                          AAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC                                                       >  SRR4302535.2429171/1‑94 (MQ=60)

                                          AAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC                                                       >  SRR4302535.22092/1‑94 (MQ=60)

                                            AACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG                                                     >  SRR4302535.1794471/1‑94 (MQ=60)

                                             ACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGG                                                    <  SRR4302535.921155/94‑1 (MQ=60)

                                             ACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGG                                                    <  SRR4302535.2413665/94‑1 (MQ=60)

                                               ACTCAAGGCCTTCTCCTTGAGAAGGCCTTGCTATTAGTTGCGGTACAGTCCCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC                                                  <  SRR4302535.3394941/94‑1 (MQ=60)

                                               ACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC                                                  <  SRR4302535.1447625/94‑1 (MQ=60)

                                                CTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTCCCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCG                                                 <  SRR4302535.4362012/94‑1 (MQ=60)

                                                 TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG                                                >  SRR4302535.2050619/1‑94 (MQ=60)

                                                 TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG                                                >  SRR4302535.1666295/1‑94 (MQ=60)

                                                 TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG                                                <  SRR4302535.1164712/94‑1 (MQ=60)

                                                   aagGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT                                              <  SRR4302535.4417156/91‑1 (MQ=60)

                                                   AG‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTC                                             >  SRR4302535.1454916/1‑94 (MQ=60)

                                                    G‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC                                            <  SRR4302535.1386436/94‑1 (MQ=60)

                                                    G‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC                                            >  SRR4302535.4663979/1‑94 (MQ=60)

                                                      GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA                                           >  SRR4302535.1198318/1‑94 (MQ=60)

                                                       CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAG                                          >  SRR4302535.1621437/1‑94 (MQ=60)

                                                       CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAG                                          >  SRR4302535.4277984/1‑94 (MQ=60)

                                                       CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAG                                          >  SRR4302535.3547824/1‑94 (MQ=60)

                                                        CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGT                                         >  SRR4302535.4052768/1‑94 (MQ=60)

                                                        CTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGT                                         <  SRR4302535.393449/94‑1 (MQ=60)

                                                           CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                      <  SRR4302535.4502978/94‑1 (MQ=60)

                                                           CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                      <  SRR4302535.478589/94‑1 (MQ=60)

                                                           CTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACC                                      >  SRR4302535.1046797/1‑94 (MQ=60)

                                                            cccgGGAGAAGTCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCG                                     <  SRR4302535.3974813/90‑1 (MQ=60)

                                                             CCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGG                                    >  SRR4302535.3948855/1‑94 (MQ=60)

                                                              CTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGA                                   >  SRR4302535.1004253/1‑94 (MQ=60)

                                                               TGGAGAATGCTTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGAC                                  <  SRR4302535.3318020/94‑1 (MQ=60)

                                                               TGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGAC                                  <  SRR4302535.460121/94‑1 (MQ=60)

                                                                GGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACA                                 <  SRR4302535.799315/94‑1 (MQ=60)

                                                                GGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACA                                 >  SRR4302535.2280154/1‑94 (MQ=60)

                                                                GGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACA                                 >  SRR4302535.3330308/1‑94 (MQ=60)

                                                                  AGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAG                               <  SRR4302535.781309/94‑1 (MQ=60)

                                                                  AGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAG                               >  SRR4302535.57993/1‑94 (MQ=60)

                                                                    AAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAG                             <  SRR4302535.2298043/94‑1 (MQ=60)

                                                                    AAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAG                             >  SRR4302535.271180/1‑94 (MQ=60)

                                                                    AAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAG                             <  SRR4302535.748728/94‑1 (MQ=60)

                                                                    AAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAG                             >  SRR4302535.2615326/1‑94 (MQ=60)

                                                                    AAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAG                             <  SRR4302535.2228060/94‑1 (MQ=60)

                                                                    AAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGAGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAG                             <  SRR4302535.4586796/94‑1 (MQ=60)

                                                                     AGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGA                            >  SRR4302535.4065197/1‑94 (MQ=60)

                                                                     AGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGA                            <  SRR4302535.3099343/94‑1 (MQ=60)

                                                                     AGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGA                            <  SRR4302535.3377274/94‑1 (MQ=60)

                                                                      GGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAA                           >  SRR4302535.3126994/1‑94 (MQ=60)

                                                                      GGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAA                           >  SRR4302535.3383064/1‑94 (MQ=60)

                                                                       GCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTCGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAA                          <  SRR4302535.3320894/94‑1 (MQ=60)

                                                                        CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGCAAA                         >  SRR4302535.4229079/1‑94 (MQ=60)

                                                                        CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAA                         >  SRR4302535.3281775/1‑94 (MQ=60)

                                                                        CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAA                         <  SRR4302535.3751405/94‑1 (MQ=60)

                                                                        CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAA                         >  SRR4302535.681816/1‑94 (MQ=60)

                                                                        CCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAA                         >  SRR4302535.1783194/1‑94 (MQ=60)

                                                                         CTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAC                        >  SRR4302535.1095899/1‑94 (MQ=60)

                                                                         CTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAC                        >  SRR4302535.2340336/1‑94 (MQ=60)

                                                                         CTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAC                        >  SRR4302535.4249294/1‑94 (MQ=60)

                                                                         CTAGCTATTAGTTGCAGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGCCCGGTCGGCTCCAGTACCGGACAAGAGAAAAC                        <  SRR4302535.3468582/94‑1 (MQ=60)

                                                                           TGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCA                      >  SRR4302535.2334230/1‑94 (MQ=60)

                                                                           TGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCA                      >  SRR4302535.3423170/1‑94 (MQ=60)

                                                                           TGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCA                      <  SRR4302535.1804914/94‑1 (MQ=60)

                                                                           TGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCA                      <  SRR4302535.2135832/94‑1 (MQ=60)

                                                                             CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                    >  SRR4302535.2205616/1‑94 (MQ=60)

                                                                             CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                    >  SRR4302535.4680740/1‑94 (MQ=60)

                                                                             CTATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACT                    >  SRR4302535.3004272/1‑94 (MQ=60)

                                                                              TATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTT                   >  SRR4302535.3258317/1‑94 (MQ=60)

                                                                              TATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTT                   <  SRR4302535.2186147/94‑1 (MQ=60)

                                                                              TATTAGTTGCGGTACAGCACCTTAATGATGTGATCTCCGACCTGGGTGTGCATCGGCCAGGTCGGCTCCAGTACCtgaccacagaacaacactt                   >  SRR4302535.343847/1‑75 (MQ=60)

                                                                               ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTT                  >  SRR4302535.3414057/1‑94 (MQ=60)

                                                                               ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTT                  >  SRR4302535.343150/1‑94 (MQ=60)

                                                                               ATTAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGCCTCCAGTACCGGACAAGAGAAAACCACTTT                  >  SRR4302535.743142/1‑94 (MQ=60)

                                                                                 TAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT                <  SRR4302535.60805/94‑1 (MQ=60)

                                                                                 TAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT                <  SRR4302535.568114/94‑1 (MQ=60)

                                                                                 TAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT                <  SRR4302535.1499387/94‑1 (MQ=60)

                                                                                 TAGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGAGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT                <  SRR4302535.3328663/94‑1 (MQ=60)

                                                                                  AGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATC               <  SRR4302535.2576433/94‑1 (MQ=60)

                                                                                  AGTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATC               >  SRR4302535.1997709/1‑94 (MQ=60)

                                                                                   GTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCG              >  SRR4302535.1760050/1‑94 (MQ=60)

                                                                                   GTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCG              <  SRR4302535.4107222/94‑1 (MQ=60)

                                                                                   GTTGCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCG              <  SRR4302535.2775005/94‑1 (MQ=60)

                                                                                      GCGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAAC           <  SRR4302535.2043005/94‑1 (MQ=60)

                                                                                       CGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACG          <  SRR4302535.1554369/94‑1 (MQ=60)

                                                                                       CGGTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACG          <  SRR4302535.1197579/94‑1 (MQ=60)

                                                                                       CGGTACAGTACCTTAATGATGTGATATCCCAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACG          >  SRR4302535.2479679/1‑94 (MQ=60)

                                                                                         GTACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAACCCACTTTATCGAACGCC        >  SRR4302535.3394851/1‑94 (MQ=60)

                                                                                          TACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCG       >  SRR4302535.4368500/1‑94 (MQ=60)

                                                                                           ACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGG      <  SRR4302535.384156/94‑1 (MQ=60)

                                                                                           ACAGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGG      <  SRR4302535.2959704/94‑1 (MQ=60)

                                                                                             AGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAA    >  SRR4302535.2985622/1‑94 (MQ=60)

                                                                                             AGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAA    >  SRR4302535.4332985/1‑94 (MQ=60)

                                                                                             AGTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAA    <  SRR4302535.4683624/94‑1 (MQ=60)

                                                                                              GTACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAAC   >  SRR4302535.4603710/1‑94 (MQ=60)

                                                                                               TACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACC  >  SRR4302535.3439917/1‑94 (MQ=60)

TGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACC  >  NC_000913/3957075‑3957258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`