Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,551 |
+T |
intergenic (‑120/‑741) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,550 | 1 | . | T | 99.3%
| 547.0
/ ‑4.3
| 152 | intergenic (‑119/‑742) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (75/76); total (75/77) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 163 total aligned reads displayed.
TTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957469‑3957626
|
aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑T‑ccc < 1:1707689/93‑2 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑T‑ccct > 2:4653394/1‑91 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑T‑ccctca > 2:3178309/1‑89 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgg < 2:4503788/93‑1 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgg < 1:4443476/93‑1 (MQ=255)
ttcGCAGATGCTAACGTAAGTGTCAGTCAGGCAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAggg < 1:3731099/91‑1 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAggg > 2:4453096/1‑93 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGCGCATATATGGCAAAAGCCC‑GGGAAAT‑C‑C‑‑G‑GGCC‑TAGCAGG‑TCCCTCAAggg > 1:761578/1‑93 (MQ=255)
ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgggg < 2:1534196/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGga > 2:2369905/1‑93 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgggggg > 1:1666371/1‑91 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACAGATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgag > 1:3295042/1‑93 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgag > 1:2855760/1‑93 (MQ=255)
cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTTCCTATATCGCAAAAGCCCGGGAAAAA‑C‑G‑‑G‑G‑‑CGTCGCAGG‑TCCCTCAAAGGgaga > 1:4587355/1‑93 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgagga > 1:3216590/1‑91 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACCTATATGGCAAAAGCCCGGGAAAAT‑CGG‑‑G‑G‑‑T‑TCGCAGG‑TCCCTCAAGGGGGGaaa > 2:2847323/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaa > 2:3502267/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaa > 1:296912/1‑93 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAc < 1:309468/93‑1 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt > 1:366775/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGGAC‑CCTCAAGGGGAGAAAACtt > 1:1284556/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 2:381637/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 1:4197072/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt < 1:1873936/93‑1 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 2:2663876/1‑93 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa < 2:2275360/93‑1 (MQ=255)
tAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa < 1:850636/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg < 2:1949860/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg < 1:2895069/93‑1 (MQ=255)
cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg > 2:4257265/1‑93 (MQ=255)
tAATTGTCNGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 2:3986503/93‑1 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CGGG‑G‑‑T‑TCGCAGG‑TCCCCCAAGGGGAGAAAACTTAggggc > 2:2508064/1‑91 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 1:2078765/93‑1 (MQ=255)
atggtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 2:677083/90‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 2:3892165/93‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 1:1020261/93‑1 (MQ=255)
ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctct > 2:3941193/1‑93 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4150698/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:3208865/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:1273965/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 1:3544901/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:130383/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt > 1:4657640/1‑93 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGGCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCCATg > 2:1630245/1‑93 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg < 1:538367/93‑1 (MQ=255)
catacagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAC‑C‑C‑‑G‑GGTT‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 2:4000893/89‑1 (MQ=255)
gtcagGGAGTGGCTGGTACGTATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 2:480700/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 2:2999988/93‑1 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAATCC‑C‑‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGGAAACTTAGGGCCTCTATGGGCt > 2:2409313/1‑93 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt < 1:1350816/93‑1 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:409295/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 1:3931279/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:3007812/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGAAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 2:1212677/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:1766907/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:241424/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 1:1499344/1‑93 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:3307295/93‑1 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 1:36160/93‑1 (MQ=255)
aGTGGCTTGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 2:1418735/93‑1 (MQ=255)
gTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 2:4116896/93‑1 (MQ=255)
gTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt > 2:956580/1‑93 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:2242147/1‑93 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:98210/1‑93 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 2:3399515/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 2:3068860/1‑93 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:1675130/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:2609307/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 2:4242645/1‑93 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:395835/93‑1 (MQ=255)
gCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt > 2:4421348/1‑93 (MQ=255)
tGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 2:1197357/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:705295/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 1:3286258/1‑93 (MQ=255)
aCATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg > 2:3427336/1‑93 (MQ=255)
aCATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:1031198/93‑1 (MQ=255)
aCATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg > 2:180963/1‑93 (MQ=255)
cATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 2:1485055/1‑93 (MQ=255)
cATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:3476472/93‑1 (MQ=255)
atatatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:375972/93‑1 (MQ=255)
atatatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:4603493/1‑93 (MQ=255)
atatatGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:476473/1‑93 (MQ=255)
atatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:265810/93‑1 (MQ=255)
tatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 1:1297822/1‑93 (MQ=255)
tatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 2:510672/1‑93 (MQ=255)
atGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg > 2:36648/1‑93 (MQ=255)
tGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3827508/1‑93 (MQ=255)
tGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3797286/1‑93 (MQ=255)
tGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3142560/1‑93 (MQ=255)
cAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 1:4016532/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGCTGGttatt > 1:2239000/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:4373075/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:3342342/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt < 1:1949039/93‑1 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 2:3647666/1‑93 (MQ=255)
aaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt > 1:1421316/1‑93 (MQ=255)
aGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:1014414/93‑1 (MQ=255)
gCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 1:4028533/1‑93 (MQ=255)
ccc‑GGAAAAT‑C‑CG‑G‑G‑‑CGTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:3258482/93‑1 (MQ=255)
cc‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:3605119/1‑93 (MQ=255)
|
TTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957469‑3957626
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCTG‑‑CT‑CGCA‑GG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATA > NC_000913/3957478‑3957643
|
TTCGCAGATGCTAACGTAAGTGTCAGTCAGGCAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGG < SRR4302535.3756935/94‑1 (MQ=60)
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGG < SRR4302535.3756803/94‑1 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAG < SRR4302535.1249612/94‑1 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACAGATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAG > SRR4302535.3317948/1‑94 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAG > SRR4302535.2875995/1‑94 (MQ=60)
GCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGA > SRR4302535.2227627/1‑94 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAA < SRR4302535.3293805/94‑1 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAA > SRR4302535.298982/1‑94 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACT > SRR4302535.369306/1‑94 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACT < SRR4302535.311616/94‑1 (MQ=60)
GCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGGAAATCCGGGCTT‑CGCA‑CG‑TCCCTCAAGGGGAGAAAACTT > SRR4302535.1683059/1‑94 (MQ=60)
GCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GGAC‑CCTCAAGGGGAGAAAACTT > SRR4302535.1293711/1‑94 (MQ=60)
GCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTT > SRR4302535.4225791/1‑94 (MQ=60)
GCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATACGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTT > SRR4302535.2008279/1‑94 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTA < SRR4302535.1887438/94‑1 (MQ=60)
TAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAG < SRR4302535.856625/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGG < SRR4302535.2915547/94‑1 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGC < SRR4302535.789766/94‑1 (MQ=60)
GTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCC > SRR4302535.3945368/1‑94 (MQ=60)
TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCT > SRR4302535.3353064/1‑94 (MQ=60)
TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCT < SRR4302535.2093740/94‑1 (MQ=60)
AATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTC > SRR4302535.566793/1‑94 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302535.3036239/94‑1 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302535.1027511/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT > SRR4302535.4689153/1‑94 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGACCGGAAAATCCGGGCTT‑CGCAGGG‑C‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATG > SRR4302535.325908/1‑94 (MQ=57)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG < SRR4302535.3569518/94‑1 (MQ=60)
TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG < SRR4302535.542125/94‑1 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA < SRR4302535.1360465/94‑1 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC < SRR4302535.2407991/94‑1 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302535.3028881/1‑94 (MQ=60)
AGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACA < SRR4302535.3958120/94‑1 (MQ=60)
AGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACA > SRR4302535.1510130/1‑94 (MQ=60)
AGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACA < SRR4302535.3132008/94‑1 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG < SRR4302535.1426960/94‑1 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG < SRR4302535.36438/94‑1 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC > SRR4302535.98904/1‑94 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC < SRR4302535.4317237/94‑1 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC > SRR4302535.2258097/1‑94 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCACGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302535.3469552/94‑1 (MQ=60)
GGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT < SRR4302535.1687257/94‑1 (MQ=60)
GGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT < SRR4302535.2628030/94‑1 (MQ=60)
GGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT < SRR4302535.398608/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC > SRR4302535.3309100/1‑94 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC > SRR4302535.3583971/1‑94 (MQ=60)
GGTACATATATGGCAAAAGACCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302535.1584346/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG > SRR4302535.4708485/1‑94 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG < SRR4302535.1038522/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG > SRR4302535.479815/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG > SRR4302535.4634793/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG > SRR4302535.1000298/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302535.3500632/94‑1 (MQ=60)
ATATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGA > SRR4302535.1335191/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG > SRR4302535.1307079/1‑94 (MQ=60)
ATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT > SRR4302535.3823461/1‑94 (MQ=60)
ATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT > SRR4302535.3164425/1‑94 (MQ=60)
ATGGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT > SRR4302535.3853911/1‑94 (MQ=60)
GGCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTA < SRR4302535.4023845/94‑1 (MQ=60)
GCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT > SRR4302535.4044001/1‑94 (MQ=60)
GCAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302535.4496203/94‑1 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGCTGGTTATT > SRR4302535.2254930/1‑94 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302535.4402995/1‑94 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302535.2966436/1‑94 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302535.287497/1‑94 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302535.3365632/1‑94 (MQ=60)
AAAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT < SRR4302535.1963068/94‑1 (MQ=60)
AAAGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT > SRR4302535.1431463/1‑94 (MQ=60)
AGCCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTAT > SRR4302535.4056095/1‑94 (MQ=60)
CCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302535.3655840/1‑94 (MQ=60)
CCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302535.3630127/1‑94 (MQ=60)
CCCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302535.3826397/94‑1 (MQ=60)
CCCGGAAAATCCGGGCGT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302535.3281128/94‑1 (MQ=60)
CCGGAAAATCCGGGCTT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > SRR4302535.2409955/1‑94 (MQ=60)
ggaaaatcggggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA < SRR4302535.858240/80‑1 (MQ=60)
ggaaaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA < SRR4302535.3901562/80‑1 (MQ=60)
gaaaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAA > SRR4302535.1696793/14‑94 (MQ=60)
gaaaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAA < SRR4302535.4377179/81‑1 (MQ=60)
aaaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT < SRR4302535.4039682/82‑1 (MQ=60)
aaaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT < SRR4302535.1872417/82‑1 (MQ=60)
aaaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT < SRR4302535.444853/82‑1 (MQ=60)
aaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302535.2557043/12‑94 (MQ=60)
aaatccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT < SRR4302535.4485946/83‑1 (MQ=60)
atccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA < SRR4302535.3756131/85‑1 (MQ=60)
gccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT < SRR4302535.865585/86‑1 (MQ=60)
ccgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302535.1594667/87‑1 (MQ=60)
cgggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA < SRR4302535.646449/88‑1 (MQ=60)
gggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302535.3177973/89‑1 (MQ=60)
gggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302535.2723112/89‑1 (MQ=60)
gggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG > SRR4302535.3464621/6‑94 (MQ=60)
gggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302535.1417281/89‑1 (MQ=60)
ggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC > SRR4302535.4180007/5‑94 (MQ=60)
ggctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC > SRR4302535.1135118/5‑94 (MQ=60)
G‑‑CTGCGCA‑GG‑TCCCTCAAGGGGAGAAACCTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302535.978911/94‑1 (MQ=60)
gctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302535.3152455/91‑1 (MQ=60)
gctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG > SRR4302535.3476299/4‑94 (MQ=60)
ctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGT > SRR4302535.3887931/3‑94 (MQ=60)
ctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302535.3190428/3‑94 (MQ=60)
ctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302535.2620133/3‑94 (MQ=60)
ctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302535.3882985/3‑94 (MQ=60)
ctT‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302535.380303/3‑94 (MQ=60)
T‑CGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATA < SRR4302535.3115404/94‑1 (MQ=60)
|
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCTG‑‑CT‑CGCA‑GG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATA > NC_000913/3957478‑3957643
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
