Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I2 R1 | 1873 | 183.1 | 9376148 | 98.2% | 9207377 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,991,607 | G→A | D22D (GAC→GAT) V49I (GTC→ATC) |
cyaY ← b3808 → |
hypothetical protein hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,991,607 | 0 | G | A | 100.0% | 841.0 / NA | 232 | D22D (GAC→GAT) V49I (GTC→ATC) | cyaY b3808 | hypothetical protein hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (106/126); total (106/126) | |||||||||||
Only 100 of 242 total aligned reads displayed.
GTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAT > NC_000913/3991517‑3991696 | gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc < 1:2885126/93‑1 (MQ=255)gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc > 1:2249849/1‑93 (MQ=255) ttGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATcc < 2:1488558/93‑1 (MQ=255) tGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCa < 1:4221746/93‑1 (MQ=255) gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg > 2:396518/1‑93 (MQ=255) gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg > 2:1009165/1‑93 (MQ=255) gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg < 2:1875354/93‑1 (MQ=255) tAATGATTTTTCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGc < 2:761806/93‑1 (MQ=255) tAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGc > 1:1839739/1‑93 (MQ=255) aaTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCg < 2:2640239/93‑1 (MQ=255) aaTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCg > 1:4320414/1‑93 (MQ=255) aaTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCg < 1:48146/93‑1 (MQ=255) ataaTTTTGCTGCCTCTCTCAAATGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGt < 1:2423381/90‑1 (MQ=255) tGATTTTGCTGCCCGTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGtt < 1:3198054/93‑1 (MQ=255) tGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGtt > 2:2192506/1‑93 (MQ=255) tGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGtt > 2:3065500/1‑93 (MQ=255) gATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc < 1:4613747/93‑1 (MQ=255) gATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc < 2:1930104/93‑1 (MQ=255) gATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc > 1:4015044/1‑93 (MQ=255) gATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc < 2:4257420/93‑1 (MQ=255) aTTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttct < 1:3133482/93‑1 (MQ=255) ttttGCTGCCACTCTCAAAGGGAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCACGCGttcct > 2:4087310/1‑91 (MQ=255) ttGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCa > 1:907098/1‑93 (MQ=255) gctgcCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAAt < 1:411689/93‑1 (MQ=255) tgcCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATgg > 2:3519651/1‑93 (MQ=255) tgcCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATgg < 1:2187535/93‑1 (MQ=255) actctcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAg > 1:3364495/3‑93 (MQ=255) ctctcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGc > 1:1339605/2‑93 (MQ=255) ctcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCa < 1:3745314/93‑1 (MQ=255) ctcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCa > 2:1748059/1‑93 (MQ=255) tcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCag > 2:2596693/1‑93 (MQ=255) cAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCaga < 1:2946628/93‑1 (MQ=255) aaaGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCagag > 1:1712109/1‑93 (MQ=255) aaaGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCagag < 1:150511/93‑1 (MQ=255) aaGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGt < 1:1572005/93‑1 (MQ=255) aGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGtt < 1:2537570/93‑1 (MQ=255) tAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGAt < 1:362528/93‑1 (MQ=255) aaTGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATc < 2:3915238/93‑1 (MQ=255) aTGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCa < 1:2118119/93‑1 (MQ=255) aTGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCa > 1:4291189/1‑93 (MQ=255) gTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGcc > 1:1028188/1‑93 (MQ=255) gTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGcc < 2:943752/93‑1 (MQ=255) tCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCa < 1:192286/93‑1 (MQ=255) cAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAg < 1:4554504/93‑1 (MQ=255) cAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAg < 2:2914622/93‑1 (MQ=255) cAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAg < 2:3447736/93‑1 (MQ=255) aGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAgg > 2:4347528/1‑93 (MQ=255) aGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTAAATGGTCAGCCAGAGTTGATCAGCCAgg > 2:3769210/1‑93 (MQ=255) gTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGc > 1:2825011/1‑93 (MQ=255) tACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCg > 2:581611/1‑93 (MQ=255) cgccgcCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTTTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGAt < 2:1166268/93‑1 (MQ=255) ccgccgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGa > 1:855259/1‑93 (MQ=255) cgccgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGaa > 2:1303731/1‑93 (MQ=255) cgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAtt > 2:503240/1‑93 (MQ=255) gTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAtta > 2:1916573/1‑92 (MQ=255) gTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTc < 2:3086626/93‑1 (MQ=255) cttGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCAGCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTc < 1:3478708/92‑1 (MQ=255) ttGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCa > 1:4526479/1‑93 (MQ=255) tGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCAc < 2:4484571/93‑1 (MQ=255) tGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCAc < 2:1395560/93‑1 (MQ=255) tGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCAc < 1:673811/93‑1 (MQ=255) tGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCAc < 1:4349766/93‑1 (MQ=255) gATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACt < 1:2234114/93‑1 (MQ=255) gATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACt > 2:269959/1‑93 (MQ=255) aTTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTg > 2:4031149/1‑93 (MQ=255) ttCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTc < 2:4175977/93‑1 (MQ=255) tCGCAGTCGATATCGCTGTTGCCATCCCAGTCATCCAGGCGTTTTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGACGAAATTCACTGTCg > 2:4679225/1‑93 (MQ=255) gCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGtt > 2:4124646/1‑93 (MQ=255) cAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTc > 1:53071/1‑93 (MQ=255) aGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCa > 2:717648/1‑93 (MQ=255) gTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAt < 1:780932/93‑1 (MQ=255) cGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttg < 2:4589592/93‑1 (MQ=255) gATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgt < 1:3282232/93‑1 (MQ=255) gATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgt < 1:2164766/93‑1 (MQ=255) gATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgt > 2:3726541/1‑93 (MQ=255) atatCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgtt > 2:2526309/1‑93 (MQ=255) tatCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgttg > 1:4604071/1‑93 (MQ=255) atCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATtgttgt < 1:272816/93‑1 (MQ=255) atCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATtgttgt < 1:1194801/93‑1 (MQ=255) tCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTa < 2:3466242/93‑1 (MQ=255) tCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTa > 1:2475494/1‑93 (MQ=255) tCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTa < 2:2850867/93‑1 (MQ=255) gCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATc < 1:1263642/93‑1 (MQ=255) gCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATc < 1:2596278/93‑1 (MQ=255) cTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATct > 1:2395366/1‑92 (MQ=255) tGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCt > 2:2109071/1‑93 (MQ=255) gTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTg < 2:88088/93‑1 (MQ=255) gTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTg < 1:1125121/93‑1 (MQ=255) gTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTg > 1:635988/1‑93 (MQ=255) gTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTg < 2:2274281/93‑1 (MQ=255) gCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGttt < 2:4207855/93‑1 (MQ=255) ccATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGtttt < 2:4418090/93‑1 (MQ=255) ccATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGtttt > 2:2432249/1‑93 (MQ=255) aTCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTa > 1:2757699/1‑93 (MQ=255) aTCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTa > 1:379888/1‑93 (MQ=255) aTCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTa < 1:4639528/93‑1 (MQ=255) tCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTaa > 1:340672/1‑93 (MQ=255) ccAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGt < 2:3685698/93‑1 (MQ=255) aGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGa > 1:4272285/1‑93 (MQ=255) gtcatcCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAt < 2:3767398/93‑1 (MQ=255) | GTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAT > NC_000913/3991517‑3991696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
GCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGCG > NC_000913/3991514‑3991700 | GCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCA < SRR4302535.4134483/94‑1 (MQ=60)GCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCA < SRR4302535.3245946/94‑1 (MQ=60) CGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCAT > SRR4302535.3848101/1‑94 (MQ=60) GGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATC > SRR4302535.2265868/1‑94 (MQ=60) GTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCC < SRR4302535.2905537/94‑1 (MQ=60) TTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCA > SRR4302535.3425956/1‑94 (MQ=60) TTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCA < SRR4302535.2497620/94‑1 (MQ=60) TGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAG > SRR4302535.3563032/1‑94 (MQ=60) TGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAG < SRR4302535.4250634/94‑1 (MQ=60) GATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGG < SRR4302535.2447068/94‑1 (MQ=60) ATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGC > SRR4302535.1853010/1‑94 (MQ=60) TAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCG > SRR4302535.4349969/1‑94 (MQ=60) TAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCG < SRR4302535.4567636/94‑1 (MQ=60) AATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGT < SRR4302535.48507/94‑1 (MQ=60) ATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTT > SRR4302535.2591231/1‑94 (MQ=60) ATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTT < SRR4302535.430829/94‑1 (MQ=60) ATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTT > SRR4302535.2188512/1‑94 (MQ=60) ATAATTTTGCTGCCTCTCTCAAATGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTT < SRR4302535.2440838/94‑1 (MQ=60) TGATTTTGCTGCCCGTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTC < SRR4302535.3220183/94‑1 (MQ=60) TGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTC > SRR4302535.4042504/1‑94 (MQ=60) GATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCT < SRR4302535.1097132/94‑1 (MQ=60) GATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCT < SRR4302535.4645093/94‑1 (MQ=60) ATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTT < SRR4302535.3155300/94‑1 (MQ=60) TTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCA > SRR4302535.913538/1‑94 (MQ=60) TGCTGCCCCTCTCAAAGGTAATGGTCAGTGCGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAAT < SRR4302535.905702/94‑1 (MQ=60) TGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAAT > SRR4302535.4617386/1‑94 (MQ=60) GCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATG < SRR4302535.414580/94‑1 (MQ=60) GCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATG > SRR4302535.4087538/1‑94 (MQ=60) CTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGG < SRR4302535.3258722/94‑1 (MQ=60) TGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGT < SRR4302535.2203117/94‑1 (MQ=60) CCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTTATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCA < SRR4302535.2442783/94‑1 (MQ=60) CACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAG > SRR4302535.3387906/1‑94 (MQ=60) ACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGC > SRR4302535.1349165/1‑94 (MQ=60) CTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCC > SRR4302535.53267/1‑94 (MQ=60) TCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCA < SRR4302535.938437/94‑1 (MQ=60) CCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCA < SRR4302535.3934304/94‑1 (MQ=60) CTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAG < SRR4302535.3771228/94‑1 (MQ=60) CTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAG > SRR4302535.203208/1‑94 (MQ=60) TCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGA < SRR4302535.2264693/94‑1 (MQ=60) CAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAG < SRR4302535.2967334/94‑1 (MQ=60) CAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAG > SRR4302535.1724488/1‑94 (MQ=60) AAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGT > SRR4302535.1250385/1‑94 (MQ=60) AAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGT > SRR4302535.1188442/1‑94 (MQ=60) AAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGT < SRR4302535.151563/94‑1 (MQ=60) AAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTT < SRR4302535.1732557/94‑1 (MQ=60) AAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTT < SRR4302535.1583352/94‑1 (MQ=60) AAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTT < SRR4302535.1549734/94‑1 (MQ=60) AGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTG < SRR4302535.2555849/94‑1 (MQ=60) GGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGA < SRR4302535.4637640/94‑1 (MQ=60) GGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGA < SRR4302535.2309993/94‑1 (MQ=60) GTAATGGTCAGTACGCCGCCTTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGAT < SRR4302535.1461422/94‑1 (MQ=60) GTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGAT < SRR4302535.122758/94‑1 (MQ=60) TAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATC < SRR4302535.365029/94‑1 (MQ=60) AATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCA < SRR4302535.581930/94‑1 (MQ=60) AATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCA > SRR4302535.4320557/1‑94 (MQ=60) ATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAG < SRR4302535.798462/94‑1 (MQ=60) ATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAG < SRR4302535.2133397/94‑1 (MQ=60) ATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAG < SRR4302535.4661163/94‑1 (MQ=60) GGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCC > SRR4302535.1035488/1‑94 (MQ=60) GGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCC < SRR4302535.1661094/94‑1 (MQ=60) GTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCA > SRR4302535.698031/1‑94 (MQ=60) GTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCA < SRR4302535.1410636/94‑1 (MQ=60) TCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAG < SRR4302535.193613/94‑1 (MQ=60) CAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGG < SRR4302535.4585617/94‑1 (MQ=60) AGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGC > SRR4302535.2845065/1‑94 (MQ=60) TACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGA > SRR4302535.2658906/1‑94 (MQ=60) ACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGAT > SRR4302535.4483950/1‑94 (MQ=60) ACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGAT > SRR4302535.2947368/1‑94 (MQ=60) CGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATG < SRR4302535.4365686/94‑1 (MQ=60) CGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATG < SRR4302535.6684/94‑1 (MQ=60) GCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGA > SRR4302535.861287/1‑94 (MQ=60) CCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAA < SRR4302535.194829/94‑1 (MQ=60) GCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAT < SRR4302535.3518766/94‑1 (MQ=60) GCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAT > SRR4302535.4614749/1‑94 (MQ=60) CCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATT > SRR4302535.4332631/1‑94 (MQ=60) CGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTC > SRR4302535.2195880/1‑94 (MQ=60) GTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCA > SRR4302535.3106566/1‑94 (MQ=60) GTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCA > SRR4302535.4148525/1‑94 (MQ=60) GTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCA > SRR4302535.4557486/1‑94 (MQ=60) CTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCAGCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCA < SRR4302535.3502878/94‑1 (MQ=60) TTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCAC < SRR4302535.2709716/94‑1 (MQ=60) TGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACT > SRR4302535.3294833/1‑94 (MQ=60) TGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACT < SRR4302535.4379522/94‑1 (MQ=60) TGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACT < SRR4302535.678516/94‑1 (MQ=60) GATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTG < SRR4302535.2250006/94‑1 (MQ=60) ATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGT > SRR4302535.954277/1‑94 (MQ=60) ATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGT > SRR4302535.622288/1‑94 (MQ=60) ATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGT > SRR4302535.3428596/1‑94 (MQ=60) TTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTC < SRR4302535.316430/94‑1 (MQ=60) GCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTC > SRR4302535.53461/1‑94 (MQ=60) CAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCA < SRR4302535.3928911/94‑1 (MQ=60) GTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATT > SRR4302535.3325023/1‑94 (MQ=60) GTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATT > SRR4302535.4299886/1‑94 (MQ=60) GTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATT < SRR4302535.786415/94‑1 (MQ=60) GTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATT < SRR4302535.47448/94‑1 (MQ=60) CGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGT > SRR4302535.1855160/1‑94 (MQ=60) CGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGT < SRR4302535.4474378/94‑1 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT < SRR4302535.4181992/94‑1 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT < SRR4302535.3305027/94‑1 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT > SRR4302535.1739934/1‑94 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT < SRR4302535.2180290/94‑1 (MQ=60) ATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTG > SRR4302535.4635372/1‑94 (MQ=60) TATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGT > SRR4302535.133948/1‑94 (MQ=60) ATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTA < SRR4302535.1203359/94‑1 (MQ=60) ATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTA > SRR4302535.2493348/1‑94 (MQ=60) ATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTA < SRR4302535.274714/94‑1 (MQ=60) ATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTAGTTCATTGTTGTT > SRR4302535.2761581/1‑94 (MQ=60) TCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTAT < SRR4302535.2234674/94‑1 (MQ=60) TCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTAA < SRR4302535.2165982/94‑1 (MQ=60) CGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATC < SRR4302535.3439859/94‑1 (MQ=60) GCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCT > SRR4302535.2412583/1‑94 (MQ=60) GCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCC < SRR4302535.2614925/94‑1 (MQ=60) GCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCC < SRR4302535.2787670/94‑1 (MQ=60) GCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCC < SRR4302535.1272683/94‑1 (MQ=60) CTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCT > SRR4302535.2273899/1‑94 (MQ=60) CTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCT > SRR4302535.294761/1‑94 (MQ=60) TGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTG < SRR4302535.243542/94‑1 (MQ=60) TGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTG > SRR4302535.476376/1‑94 (MQ=60) TGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTG < SRR4302535.3803082/94‑1 (MQ=60) TGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTG > SRR4302535.640423/1‑94 (MQ=60) GTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGT < SRR4302535.1133152/94‑1 (MQ=60) GTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGT > SRR4302535.4334470/1‑94 (MQ=60) GTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGGTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGT > SRR4302535.3694999/1‑94 (MQ=60) CATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTA > SRR4302535.382518/1‑94 (MQ=60) CATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTA > SRR4302535.2777350/1‑94 (MQ=60) ATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAA > SRR4302535.343035/1‑94 (MQ=60) ATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAA < SRR4302535.289601/94‑1 (MQ=60) ATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAA < SRR4302535.4670989/94‑1 (MQ=60) CAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGA > SRR4302535.4301531/1‑94 (MQ=60) CAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGA > SRR4302535.2822775/1‑94 (MQ=60) AGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAT < SRR4302535.713695/94‑1 (MQ=60) TCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGG < SRR4302535.1605449/94‑1 (MQ=60) TCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGG < SRR4302535.2538402/94‑1 (MQ=60) CATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGC < SRR4302535.56461/94‑1 (MQ=60) ATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGCG > SRR4302535.4604235/1‑94 (MQ=60) | GCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGCG > NC_000913/3991514‑3991700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |