Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,006,407 |
C→T |
G19E (GGA→GAA) |
yigK ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,006,407 | 0 | C | T | 100.0%
| 702.4
/ NA
| 195 | G19E (GGA→GAA) | yigK | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (99/96); total (99/96) |
Only 100 of 203 total aligned reads displayed.
AAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCCAACCCCACGCCA > NC_000913/4006318‑4006495
|
aaaCTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCa > 1:1452954/1‑93 (MQ=255)
aaCTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAg > 1:1220745/1‑93 (MQ=255)
cgcgcgGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCaaa < 1:1753237/93‑1 (MQ=255)
cgcgcTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCaaa < 1:4054781/93‑1 (MQ=255)
ctgtGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATc < 2:2111218/90‑1 (MQ=255)
cgcTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGGTTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTACAGCCAAATc > 2:4045308/1‑93 (MQ=255)
cgcTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATc < 1:2742874/93‑1 (MQ=255)
cgcTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATc > 2:2491506/1‑93 (MQ=255)
gcTGGAACAAATGTCGACGTGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCa > 2:4526238/1‑93 (MQ=255)
gcTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCa > 2:394480/1‑93 (MQ=255)
gcTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCa > 2:3067698/1‑93 (MQ=255)
cTGGAACAAATGTCGACGCGATTGAGTAGATGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCaa > 1:3689929/1‑93 (MQ=255)
cTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCaa > 1:2354270/1‑93 (MQ=255)
tGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAg < 1:2929331/93‑1 (MQ=255)
tGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAg < 1:1346905/93‑1 (MQ=255)
tGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAg < 2:2663640/93‑1 (MQ=255)
ggAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCATCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGt < 1:3385768/93‑1 (MQ=255)
ggAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGt < 1:4460064/93‑1 (MQ=255)
gAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCACATCAAGTa > 2:1682171/1‑93 (MQ=255)
gAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTa < 1:859638/93‑1 (MQ=255)
aaCAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTaa < 2:2206975/93‑1 (MQ=255)
aCAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAg > 2:3439914/1‑93 (MQ=255)
aCAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAg < 2:1641143/93‑1 (MQ=255)
aCAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAg > 2:3568381/1‑93 (MQ=255)
cAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGc < 1:1425950/93‑1 (MQ=255)
aaaTGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGcc > 2:1613837/1‑93 (MQ=255)
aaaTGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGcc > 1:659269/1‑93 (MQ=255)
aaaTGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACCGCTGGATTTCCAGCCAAATCAAGTAAGcc > 1:2514922/1‑93 (MQ=255)
aaTGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCcg > 2:1021613/1‑93 (MQ=255)
aTGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCcgg > 2:2720284/1‑92 (MQ=255)
aTGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCcgc > 1:3545528/1‑93 (MQ=255)
aTGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCcgc < 1:726340/93‑1 (MQ=255)
tGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCcgcg > 2:3728625/1‑93 (MQ=255)
gTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCgcgc < 1:2826118/93‑1 (MQ=255)
tCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGcc < 2:2249402/93‑1 (MQ=255)
cGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCt > 1:4068049/1‑93 (MQ=255)
aCGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGc > 1:925481/1‑93 (MQ=255)
aCGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGc > 1:510549/1‑93 (MQ=255)
aCGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGc > 1:3506013/1‑93 (MQ=255)
gcgATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGccc < 1:1897060/93‑1 (MQ=255)
gcgATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGccc < 1:2077146/93‑1 (MQ=255)
gcgATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGccc > 2:1697282/1‑93 (MQ=255)
aTTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcact > 2:228637/1‑93 (MQ=255)
aTTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcact > 1:3777027/1‑93 (MQ=255)
aTTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcact < 2:144332/93‑1 (MQ=255)
aTTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGACACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcact > 2:3780890/1‑93 (MQ=255)
ttGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcactt > 2:3185058/1‑93 (MQ=255)
tGAGTAGAGGCCAGCGATTTAAGGTCATTTGCACCAGCGGCGCGCCTCTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcacttc < 2:2061387/93‑1 (MQ=255)
aGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcacttcaa < 2:4228575/93‑1 (MQ=255)
aGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcacttcaa < 2:1852893/93‑1 (MQ=255)
gTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcacttcaac > 1:1099552/1‑93 (MQ=255)
tAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCcacttcaaca > 2:4490742/1‑93 (MQ=255)
cAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCaaa > 1:1658485/1‑93 (MQ=255)
cAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCaaa < 1:4132564/93‑1 (MQ=255)
cAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCaaa < 1:593901/93‑1 (MQ=255)
cAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCaaa < 2:1813197/93‑1 (MQ=255)
aGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAAc > 2:1136379/1‑93 (MQ=255)
aGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAAc < 2:1660651/93‑1 (MQ=255)
gATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCa > 2:401752/1‑93 (MQ=255)
gATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCa > 2:138357/1‑93 (MQ=255)
aTTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCaa < 1:872441/93‑1 (MQ=255)
tttAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAt < 1:1557795/93‑1 (MQ=255)
tttAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAt < 1:2160591/93‑1 (MQ=255)
tttAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAt < 1:3032818/93‑1 (MQ=255)
tttAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAt > 1:3201618/1‑93 (MQ=255)
ttAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGGTTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATc > 1:2784501/1‑93 (MQ=255)
aaGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCAc < 2:2549311/93‑1 (MQ=255)
aGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACt > 2:478354/1‑93 (MQ=255)
aGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACt < 2:2583686/93‑1 (MQ=255)
gTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGa > 2:4581375/1‑93 (MQ=255)
gTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGa < 2:382607/93‑1 (MQ=255)
gTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGa < 2:2781202/93‑1 (MQ=255)
ttGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCggg > 2:612604/1‑93 (MQ=255)
gCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGaa > 2:2647808/1‑93 (MQ=255)
aCCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGaaaa > 1:2497146/1‑93 (MQ=255)
aCCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGaaaa > 1:963268/1‑93 (MQ=255)
aCCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGaaaa > 2:3014479/1‑93 (MQ=255)
ccAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAAt < 2:1262478/93‑1 (MQ=255)
ccAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAAt > 2:1086487/1‑93 (MQ=255)
ccAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAAt > 2:455010/1‑93 (MQ=255)
aGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAg < 1:4624888/93‑1 (MQ=255)
gcggcgCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGGAAATAGc > 1:1783699/1‑93 (MQ=255)
gcgcCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑ccc > 1:359914/1‑93 (MQ=255)
gcCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑cccca < 2:2726216/93‑3 (MQ=255)
ccACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑ccccaa > 2:4515322/1‑90 (MQ=255)
cACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑ccccaac > 2:602966/1‑89 (MQ=255)
cACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑ccccaac > 1:4303029/1‑89 (MQ=255)
ctgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCCCAaccc > 1:3281494/1‑93 (MQ=255)
ctgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCCCAaccc < 1:3830707/93‑1 (MQ=255)
tgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAAcccc < 1:2610419/93‑1 (MQ=255)
tgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAAcccc > 1:3123142/1‑93 (MQ=255)
tgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAAcccc > 1:596618/1‑93 (MQ=255)
gctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCa > 1:2420808/1‑93 (MQ=255)
gctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCa < 1:932464/93‑1 (MQ=255)
gctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCa > 1:4232544/1‑93 (MQ=255)
ctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAc > 1:1849921/1‑93 (MQ=255)
ctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAc > 1:4398980/1‑93 (MQ=255)
ggATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGc > 2:3367005/1‑93 (MQ=255)
ggATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGc < 1:2209185/93‑1 (MQ=255)
aTTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCa < 1:4172719/93‑1 (MQ=255)
|
AAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCCAACCCCACGCCA > NC_000913/4006318‑4006495
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACAAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCCAACCCCACGCCAACCA > NC_000913/4006314‑4006499
|
ACAAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTT < SRR4302535.2207420/94‑1 (MQ=60)
ACAAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTT < SRR4302535.2224950/94‑1 (MQ=60)
ACAAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTT < SRR4302535.3260930/94‑1 (MQ=60)
ACAAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTT > SRR4302535.547903/1‑94 (MQ=60)
CAAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTC < SRR4302535.432905/94‑1 (MQ=60)
AAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCC < SRR4302535.450808/94‑1 (MQ=60)
AAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCA > SRR4302535.1463354/1‑94 (MQ=60)
AAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAG > SRR4302535.1229494/1‑94 (MQ=60)
AAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAG < SRR4302535.514293/94‑1 (MQ=60)
AACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGC < SRR4302535.2489756/94‑1 (MQ=60)
ACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCC > SRR4302535.2939844/1‑94 (MQ=60)
CGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAAT > SRR4302535.3146794/1‑94 (MQ=60)
CGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAAT < SRR4302535.4082544/94‑1 (MQ=60)
CGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAAT > SRR4302535.870548/1‑94 (MQ=60)
CGCGCGGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAAT < SRR4302535.1765907/94‑1 (MQ=60)
CGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCA < SRR4302535.2762424/94‑1 (MQ=60)
CGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCA < SRR4302535.1455181/94‑1 (MQ=60)
GCTGGAACAAATGTCGACGCGATTGAGTAGATGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAA > SRR4302535.3715468/1‑94 (MQ=60)
GCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAA > SRR4302535.2371149/1‑94 (MQ=60)
CTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAG < SRR4302535.907240/94‑1 (MQ=60)
CTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAG > SRR4302535.124452/1‑94 (MQ=60)
TGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGT < SRR4302535.2949970/94‑1 (MQ=60)
TGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGT < SRR4302535.1356521/94‑1 (MQ=60)
GGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCATCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTA < SRR4302535.3409328/94‑1 (MQ=60)
GGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTA > SRR4302535.3798130/1‑94 (MQ=60)
GGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTA < SRR4302535.4490653/94‑1 (MQ=60)
GGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTA < SRR4302535.2142971/94‑1 (MQ=60)
GAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAA < SRR4302535.865705/94‑1 (MQ=60)
AACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAG > SRR4302535.1824039/1‑94 (MQ=60)
ACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGC < SRR4302535.4703806/94‑1 (MQ=60)
ACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGC < SRR4302535.1517439/94‑1 (MQ=60)
ACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGC < SRR4302535.3533371/94‑1 (MQ=60)
CAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCC < SRR4302535.3298968/94‑1 (MQ=60)
CAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCC < SRR4302535.1436128/94‑1 (MQ=60)
CAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCC > SRR4302535.663867/1‑94 (MQ=60)
CAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCC < SRR4302535.3419013/94‑1 (MQ=60)
CAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACCGCTGGATTTCCAGCCAAATCAAGTAAGCC > SRR4302535.2533053/1‑94 (MQ=60)
AATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGC > SRR4302535.3570146/1‑94 (MQ=60)
ATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCG < SRR4302535.731440/94‑1 (MQ=60)
GTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCC < SRR4302535.2846178/94‑1 (MQ=60)
TCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCT > SRR4302535.4095886/1‑94 (MQ=60)
TCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCT < SRR4302535.1749405/94‑1 (MQ=60)
CGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTG > SRR4302535.3905428/1‑94 (MQ=60)
GACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGC > SRR4302535.932037/1‑94 (MQ=60)
GACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGC > SRR4302535.3530380/1‑94 (MQ=60)
GACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGC > SRR4302535.514119/1‑94 (MQ=60)
GACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGC > SRR4302535.4114654/1‑94 (MQ=60)
GCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCA < SRR4302535.1910708/94‑1 (MQ=60)
GCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCA < SRR4302535.2092109/94‑1 (MQ=60)
GATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACT > SRR4302535.278248/1‑94 (MQ=60)
GATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACT > SRR4302535.673337/1‑94 (MQ=60)
GATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACT > SRR4302535.3803066/1‑94 (MQ=60)
TGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCA > SRR4302535.112351/1‑94 (MQ=60)
AGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAAC < SRR4302535.2276713/94‑1 (MQ=60)
AGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAAC > SRR4302535.1107407/1‑94 (MQ=60)
GTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACA < SRR4302535.2187053/94‑1 (MQ=60)
GTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACA < SRR4302535.854811/94‑1 (MQ=60)
GTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTAGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACA < SRR4302535.2188911/94‑1 (MQ=60)
TAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACAC < SRR4302535.2039430/94‑1 (MQ=60)
TAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACAC < SRR4302535.2843286/94‑1 (MQ=60)
AGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCCACTCAAGTAAGCCTCGCCTGCCCCATTCAACACT > SRR4302535.3580245/1‑94 (MQ=60)
GAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTT > SRR4302535.3927952/1‑94 (MQ=60)
GAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTT < SRR4302535.598980/94‑1 (MQ=60)
AGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTC > SRR4302535.2521252/1‑94 (MQ=60)
AGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTC > SRR4302535.935973/1‑94 (MQ=60)
CCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAA > SRR4302535.4255459/1‑94 (MQ=60)
CCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAA > SRR4302535.1670473/1‑94 (MQ=60)
CAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAAC < SRR4302535.4160838/94‑1 (MQ=60)
CAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAAC < SRR4302535.598066/94‑1 (MQ=60)
CAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAAC < SRR4302535.1378609/94‑1 (MQ=60)
CGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCA < SRR4302535.4441085/94‑1 (MQ=60)
ATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAT > SRR4302535.4368324/1‑94 (MQ=60)
ATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAT > SRR4302535.3223785/1‑94 (MQ=60)
ATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAT < SRR4302535.878622/94‑1 (MQ=60)
ATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAT > SRR4302535.4162205/1‑94 (MQ=60)
ATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAC > SRR4302535.186290/1‑94 (MQ=60)
ATTTAAGGTCAACTCCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAAT < SRR4302535.4092361/94‑1 (MQ=60)
TTTAAGGTCAGTTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACTCTTCAAACGCAATC < SRR4302535.632827/94‑1 (MQ=60)
TTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGGTTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATC > SRR4302535.2804316/1‑94 (MQ=60)
TTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATC < SRR4302535.2176104/94‑1 (MQ=60)
TTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATC < SRR4302535.3054047/94‑1 (MQ=60)
TTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATC < SRR4302535.1569026/94‑1 (MQ=60)
TTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCA < SRR4302535.3108079/94‑1 (MQ=60)
TTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCA > SRR4302535.3818363/1‑94 (MQ=60)
AAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACT < SRR4302535.1653537/94‑1 (MQ=60)
AATTGCACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGG > SRR4302535.2383500/1‑94 (MQ=60)
CACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAA > SRR4302535.2515161/1‑94 (MQ=60)
CACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAA > SRR4302535.4605854/1‑94 (MQ=60)
CACCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAA > SRR4302535.970107/1‑94 (MQ=60)
CCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATA < SRR4302535.4315100/94‑1 (MQ=60)
CCAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATA < SRR4302535.2668864/94‑1 (MQ=60)
CAGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAG < SRR4302535.1765917/94‑1 (MQ=60)
AGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGGAAATAGC > SRR4302535.1796608/1‑94 (MQ=60)
AGCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGC < SRR4302535.4656291/94‑1 (MQ=60)
GCGGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG < SRR4302535.2599256/94‑1 (MQ=60)
GGCGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C > SRR4302535.96339/1‑94 (MQ=60)
CGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCC > SRR4302535.362404/1‑94 (MQ=60)
CGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCCCA < SRR4302535.3000496/94‑1 (MQ=60)
CCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAAC > SRR4302535.4332466/1‑94 (MQ=60)
CACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACC > SRR4302535.2068758/1‑94 (MQ=60)
ACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCC > SRR4302535.3304284/1‑94 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCC < SRR4302535.3857126/94‑1 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCC > SRR4302535.600798/1‑94 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCC > SRR4302535.333591/1‑94 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCC > SRR4302535.3144892/1‑94 (MQ=60)
TGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCA > SRR4302535.4261509/1‑94 (MQ=60)
TGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCA > SRR4302535.2438239/1‑94 (MQ=60)
TGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCA < SRR4302535.2629148/94‑1 (MQ=60)
GCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAC > SRR4302535.1863253/1‑94 (MQ=60)
GCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAC < SRR4302535.939058/94‑1 (MQ=60)
GCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAC > SRR4302535.4429089/1‑94 (MQ=60)
CTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACG > SRR4302535.3690110/1‑94 (MQ=60)
GGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCC < SRR4302535.2224920/94‑1 (MQ=60)
ATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAA < SRR4302535.4201279/94‑1 (MQ=60)
ATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAA > SRR4302535.3143236/1‑94 (MQ=60)
TTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAAC < SRR4302535.937414/94‑1 (MQ=60)
TCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCA > SRR4302535.3292584/1‑94 (MQ=60)
|
ACAAAAACTGCGCGCTGGAACAAATGTCGACGCGATTGAGTAGAGGCCAGCGATTTAAGGTCAATTGCACCAGCGGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CCCAACCCCACGCCAACCA > NC_000913/4006314‑4006499
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
