Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,990	C→T	R109C (CGT→TGT)	yigM →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,990	0	C	T	100.0%	963.3 / NA	263	R109C (CGT→TGT)	yigM	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (123/140); total (123/140)

Only 100 of 271 total aligned reads displayed.

TATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG  >  NC_000913/4008900‑4009079

tATCTCTGCCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGt                                                                                         <  2:576073/93‑1 (MQ=255)

tATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGt                                                                                         >  1:2377010/1‑93 (MQ=255)

  tctcTTCCTGACGGTTTCCGAACTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCt                                                                                       <  2:3895824/93‑1 (MQ=255)

  tctcTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCt                                                                                       >  1:1346798/1‑93 (MQ=255)

  tctcTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCt                                                                                       <  2:3427715/93‑1 (MQ=255)

  tctcTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCt                                                                                       >  2:1635481/1‑93 (MQ=255)

   ctctACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTg                                                                                      <  2:3171941/93‑1 (MQ=255)

    tctTCCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgc                                                                                     <  2:360379/93‑1 (MQ=255)

      caCCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgcgc                                                                                   >  2:4503747/2‑93 (MQ=255)

        ccTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTg                                                                                 >  1:2507091/1‑93 (MQ=255)

        ccTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTg                                                                                 >  2:1971614/1‑93 (MQ=255)

        ccTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTg                                                                                 <  1:1586314/93‑1 (MQ=255)

        ccTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTg                                                                                 <  1:1731196/93‑1 (MQ=255)

         cTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgg                                                                                >  1:466906/1‑93 (MQ=255)

         cTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgg                                                                                <  2:2575066/93‑1 (MQ=255)

         cTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgg                                                                                >  1:955838/1‑93 (MQ=255)

          tgtcGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTggg                                                                               <  2:1334346/90‑1 (MQ=255)

          tGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTggg                                                                               <  1:4180110/93‑1 (MQ=255)

          tGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTggg                                                                               >  1:886142/1‑93 (MQ=255)

           gACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgggg                                                                              >  2:1166805/1‑93 (MQ=255)

           gACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATAATGAGTAAGCGCTGTCTGCGCTgggc                                                                              >  1:3910165/1‑92 (MQ=255)

            aCGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGc                                                                             <  1:87311/93‑1 (MQ=255)

            aCGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGc                                                                             <  1:3039255/93‑1 (MQ=255)

              ggTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTa                                                                           <  2:2415628/93‑1 (MQ=255)

              ggTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTa                                                                           <  1:1010085/93‑1 (MQ=255)

              ggTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTa                                                                           <  2:3558999/93‑1 (MQ=255)

               gTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTAt                                                                          <  1:1939296/93‑1 (MQ=255)

                tttCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATg                                                                         >  1:2272601/1‑93 (MQ=255)

                 ttCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGc                                                                        >  1:2781450/1‑93 (MQ=255)

                 ttCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGc                                                                        >  2:4147084/1‑93 (MQ=255)

                 ttCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGc                                                                        <  2:3285093/93‑1 (MQ=255)

                  tCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGcc                                                                       <  2:1450204/93‑1 (MQ=255)

                   ccGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCt                                                                      >  1:4157347/1‑93 (MQ=255)

                   ccGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCt                                                                      <  2:3220529/93‑1 (MQ=255)

                    cGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCtt                                                                     >  1:1200299/1‑93 (MQ=255)

                     gAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCttt                                                                    >  2:2353974/1‑93 (MQ=255)

                     gAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCttt                                                                    >  1:4032777/1‑93 (MQ=255)

                      aGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTa                                                                   <  1:1607288/93‑1 (MQ=255)

                        ctgctgctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAgc                                                                 <  1:1553765/93‑1 (MQ=255)

                            tgctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCt                                                             <  2:3506137/93‑1 (MQ=255)

                            tgctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCt                                                             >  2:706565/1‑93 (MQ=255)

                             gctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCtt                                                            <  1:1047684/93‑1 (MQ=255)

                               tgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGc                                                          >  2:1733237/1‑93 (MQ=255)

                                gTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCt                                                         >  1:2103690/1‑93 (MQ=255)

                                gTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCt                                                         >  2:2525648/1‑93 (MQ=255)

                                  tctccGTGCTGACGCCGCTGTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGGCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTgg                                                       <  2:4357616/90‑1 (MQ=255)

                                   cACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGc                                                      >  2:1103482/1‑93 (MQ=255)

                                    aCCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCg                                                     <  1:2659573/93‑1 (MQ=255)

                                    aCCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCg                                                     >  2:4573375/1‑93 (MQ=255)

                                    aCCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCg                                                     >  2:3843645/1‑93 (MQ=255)

                                          cTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGAtt                                               <  1:3224549/93‑1 (MQ=255)

                                           tGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTg                                              >  2:2621970/1‑93 (MQ=255)

                                            gACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTgg                                             <  1:4356043/93‑1 (MQ=255)

                                            gACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTgg                                             >  1:663328/1‑93 (MQ=255)

                                              cgccgcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTg                                           <  1:1833687/93‑1 (MQ=255)

                                               gccgcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGc                                          >  1:843725/1‑93 (MQ=255)

                                                  gcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCgg                                       >  1:3607995/1‑93 (MQ=255)

                                                  cctctACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCgg                                       <  1:3137632/92‑1 (MQ=255)

                                                     ctACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGat                                    <  1:3497608/93‑1 (MQ=255)

                                                      tACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGatt                                   >  2:915769/1‑93 (MQ=255)

                                                       aCATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGatta                                  >  1:768666/1‑93 (MQ=255)

                                                        cATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGattat                                 <  1:601758/93‑1 (MQ=255)

                                                        cATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGattat                                 <  2:2124536/93‑1 (MQ=255)

                                                          tCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTc                               <  2:1300196/93‑1 (MQ=255)

                                                          tCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTc                               <  1:4613568/93‑1 (MQ=255)

                                                            aCGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGc                             <  2:1803261/93‑1 (MQ=255)

                                                            aCGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGc                             >  1:1987253/1‑93 (MQ=255)

                                                              gCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTa                           >  2:752029/1‑93 (MQ=255)

                                                              gCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTa                           <  2:369228/93‑1 (MQ=255)

                                                               cTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTAt                          <  2:3029887/93‑1 (MQ=255)

                                                                tGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATg                         >  2:1520419/1‑93 (MQ=255)

                                                                 gATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGa                        >  1:3230214/1‑93 (MQ=255)

                                                                 gATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGa                        >  1:2886173/1‑93 (MQ=255)

                                                                  aTTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAt                       <  2:3564509/93‑1 (MQ=255)

                                                                  aTTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAt                       <  1:2241927/93‑1 (MQ=255)

                                                                   tttATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATc                      >  1:1501599/1‑93 (MQ=255)

                                                                   tttATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATc                      <  2:2931992/93‑1 (MQ=255)

                                                                   tttATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATc                      >  2:3086745/1‑93 (MQ=255)

                                                                   tttATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGAGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATc                      >  2:2741192/1‑93 (MQ=255)

                                                                   ttcaTGACACCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATc                      <  1:517255/90‑1 (MQ=255)

                                                                      aTGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAgg                   >  1:4099965/1‑93 (MQ=255)

                                                                      aTGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAgg                   >  1:1425064/1‑93 (MQ=255)

                                                                       tGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGt                  <  2:2863638/93‑1 (MQ=255)

                                                                        gACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTc                 <  1:1930073/93‑1 (MQ=255)

                                                                        gACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTc                 <  1:47104/93‑1 (MQ=255)

                                                                         atatcatGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCa                >  2:4616124/3‑93 (MQ=255)

                                                                          catcatGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCAc               <  2:4394463/93‑1 (MQ=255)

                                                                            tcatGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCg             >  1:308125/1‑93 (MQ=255)

                                                                            tcatGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCg             >  2:2689471/1‑93 (MQ=255)

                                                                               tGAGTAAGCTCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGAcc          <  2:4066615/93‑1 (MQ=255)

                                                                                gAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCa         >  1:1273873/1‑93 (MQ=255)

                                                                                gAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGATGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCa         <  2:4682248/93‑1 (MQ=255)

                                                                                 aGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCAt        <  1:1167999/93‑1 (MQ=255)

                                                                                  gTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCAtt       >  2:4052204/1‑93 (MQ=255)

                                                                                  gTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCAtt       <  1:452123/93‑1 (MQ=255)

                                                                                    aaGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTc     <  2:4322345/93‑1 (MQ=255)

                                                                                    aaGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGGGATTGGTGCCGGGATTATTCGCTATGATCAGGTCATCGACCATTTc     >  2:1917256/1‑93 (MQ=255)

                                                                                     aGCGCTGTCTGCGCTGGGGCTATTCCTTTAGCGCCTTGCTGGCGGCGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCt    <  1:3667624/93‑1 (MQ=255)

                                                                                      gcgcTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTTCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTg   <  1:3281959/93‑1 (MQ=255)

                                                                                      gcgcTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTg   >  2:3969732/1‑93 (MQ=255)

TATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG  >  NC_000913/4008900‑4009079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGACT  >  NC_000913/4008897‑4009082

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              >  SRR4302535.1473688/1‑94 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              >  SRR4302535.590956/1‑94 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              <  SRR4302535.4516017/94‑1 (MQ=60)

 CTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTG                                                                                             >  SRR4302535.389802/1‑94 (MQ=60)

  TTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGT                                                                                            >  SRR4302535.2394086/1‑94 (MQ=60)

    ATCTCTACCTGACTGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302535.2696661/94‑1 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          >  SRR4302535.1449446/1‑94 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302535.3523634/94‑1 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          >  SRR4302535.1356413/1‑94 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302535.2254003/94‑1 (MQ=60)

        CTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGC                                                                                      >  SRR4302535.4188548/1‑94 (MQ=60)

        CTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGC                                                                                      >  SRR4302535.4671439/1‑94 (MQ=60)

        CTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGC                                                                                      >  SRR4302535.1553962/1‑94 (MQ=60)

         TACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCT                                                                                     <  SRR4302535.823404/94‑1 (MQ=60)

          ACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTG                                                                                    >  SRR4302535.2525166/1‑94 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   >  SRR4302535.470174/1‑94 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   <  SRR4302535.1743711/94‑1 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   >  SRR4302535.962616/1‑94 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   <  SRR4302535.1597761/94‑1 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   <  SRR4302535.648740/94‑1 (MQ=60)

           CCTGACGGTGTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   <  SRR4302535.852477/94‑1 (MQ=60)

            CTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGG                                                                                  >  SRR4302535.120763/1‑94 (MQ=60)

            CTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGG                                                                                  >  SRR4302535.3301367/1‑94 (MQ=60)

            CTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGG                                                                                  >  SRR4302535.892414/1‑94 (MQ=60)

             TGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGG                                                                                 <  SRR4302535.4208717/94‑1 (MQ=60)

             TGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGG                                                                                 >  SRR4302535.4563972/1‑94 (MQ=60)

             TGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGG                                                                                 <  SRR4302535.4392817/94‑1 (MQ=60)

             TGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGG                                                                                 >  SRR4302535.3546367/1‑94 (MQ=60)

             TGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATAATGAGTAAGCGCTGTCTGCGCTGGGC                                                                                 >  SRR4302535.3936941/1‑94 (MQ=60)

              GACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGC                                                                                >  SRR4302535.4554187/1‑94 (MQ=60)

              GACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGC                                                                                >  SRR4302535.1949440/1‑94 (MQ=60)

               ACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCT                                                                               <  SRR4302535.2754518/94‑1 (MQ=60)

               ACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCT                                                                               <  SRR4302535.3060541/94‑1 (MQ=60)

               ACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCT                                                                               <  SRR4302535.87926/94‑1 (MQ=60)

                CGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTA                                                                              >  SRR4302535.4130578/1‑94 (MQ=60)

                 GGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTAT                                                                             <  SRR4302535.1017262/94‑1 (MQ=60)

                 GGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTAT                                                                             >  SRR4302535.1213725/1‑94 (MQ=60)

                  GTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATG                                                                            <  SRR4302535.2316779/94‑1 (MQ=60)

                  GTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATG                                                                            >  SRR4302535.2288814/1‑94 (MQ=60)

                  GTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATG                                                                            <  SRR4302535.1953263/94‑1 (MQ=60)

                  GTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATG                                                                            >  SRR4302535.2953247/1‑94 (MQ=60)

                   TTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGC                                                                           >  SRR4302535.2801250/1‑94 (MQ=60)

                    TTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCC                                                                          >  SRR4302535.3775176/1‑94 (MQ=60)

                     TCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCT                                                                         >  SRR4302535.4185805/1‑94 (MQ=60)

                      CCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTT                                                                        >  SRR4302535.1208900/1‑94 (MQ=60)

                       CGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTT                                                                       >  SRR4302535.4060365/1‑94 (MQ=60)

                       CGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTT                                                                       >  SRR4302535.2887123/1‑94 (MQ=60)

                         AGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAG                                                                     <  SRR4302535.1429556/94‑1 (MQ=60)

                         AGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAG                                                                     <  SRR4302535.1618884/94‑1 (MQ=60)

                         AGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAG                                                                     <  SRR4302535.1868044/94‑1 (MQ=60)

                           CTGCTGCTGTTCACCGTGCTGACGTCGCTATACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCG                                                                   >  SRR4302535.1576541/1‑94 (MQ=60)

                           CTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCG                                                                   <  SRR4302535.1564961/94‑1 (MQ=60)

                              CTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCT                                                                >  SRR4302535.4475406/1‑94 (MQ=60)

                               TGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTT                                                               <  SRR4302535.175452/94‑1 (MQ=60)

                                GCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTG                                                              >  SRR4302535.2081337/1‑94 (MQ=60)

                                GCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTG                                                              <  SRR4302535.1055113/94‑1 (MQ=60)

                                GCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTG                                                              >  SRR4302535.55628/1‑94 (MQ=60)

                                GCTGTTCACCGTGCTGACGCCGCTCAACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTG                                                              >  SRR4302535.2854911/1‑94 (MQ=60)

                                  TGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCT                                                            >  SRR4302535.1306496/1‑94 (MQ=60)

                                  TGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCT                                                            >  SRR4302535.2118861/1‑94 (MQ=60)

                                    TTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGG                                                          <  SRR4302535.1019894/94‑1 (MQ=60)

                                    TTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGG                                                          <  SRR4302535.2052454/94‑1 (MQ=60)

                                       ACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGG                                                       <  SRR4302535.2678626/94‑1 (MQ=60)

                                        CCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGT                                                      <  SRR4302535.3700610/94‑1 (MQ=60)

                                         CGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGCG                                                     >  SRR4302535.34986/1‑94 (MQ=60)

                                           TGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGAT                                                   <  SRR4302535.1520728/94‑1 (MQ=60)

                                           TGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGAT                                                   <  SRR4302535.4146030/94‑1 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 >  SRR4302535.1722592/1‑94 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 >  SRR4302535.1195289/1‑94 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 <  SRR4302535.3246902/94‑1 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 <  SRR4302535.235533/94‑1 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 <  SRR4302535.4223679/94‑1 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 <  SRR4302535.2263930/94‑1 (MQ=60)

                                              TGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGG                                                >  SRR4302535.667963/1‑94 (MQ=60)

                                               GACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGT                                               <  SRR4302535.4385859/94‑1 (MQ=60)

                                                GCGCCGCTCTACATCACGCTTATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTG                                              <  SRR4302535.18664/94‑1 (MQ=60)

                                                 CGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGC                                             <  SRR4302535.1846918/94‑1 (MQ=60)

                                                 CGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGC                                             >  SRR4302535.849654/1‑94 (MQ=60)

                                                  GCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCC                                            >  SRR4302535.4705208/1‑94 (MQ=60)

                                                   CCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCG                                           >  SRR4302535.474562/1‑94 (MQ=60)

                                                    CGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGG                                          >  SRR4302535.3633016/1‑94 (MQ=60)

                                                     CCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGG                                         <  SRR4302535.3159466/94‑1 (MQ=60)

                                                      CTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGA                                        <  SRR4302535.4104558/94‑1 (MQ=60)

                                                       TCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGAT                                       <  SRR4302535.3970553/94‑1 (MQ=60)

                                                        CTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATT                                      >  SRR4302535.3445897/1‑94 (MQ=60)

                                                        CTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATT                                      <  SRR4302535.3521912/94‑1 (MQ=60)

                                                         TACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTA                                     >  SRR4302535.774076/1‑94 (MQ=60)

                                                          ACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTAT                                    >  SRR4302535.986410/1‑94 (MQ=60)

                                                          ACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTAT                                    <  SRR4302535.3094077/94‑1 (MQ=60)

                                                           CATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATT                                   <  SRR4302535.605966/94‑1 (MQ=60)

                                                            ATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTC                                  <  SRR4302535.1569520/94‑1 (MQ=60)

                                                            ATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTC                                  <  SRR4302535.2156949/94‑1 (MQ=60)

                                                            ATCACGCTGATTTATGACATCATGAGGAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTC                                  <  SRR4302535.1133832/94‑1 (MQ=60)

                                                             TCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCG                                 <  SRR4302535.4644913/94‑1 (MQ=60)

                                                              CACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGC                                <  SRR4302535.851481/94‑1 (MQ=60)

                                                              CACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGC                                >  SRR4302535.2001564/1‑94 (MQ=60)

                                                                CGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTA                              >  SRR4302535.1961938/1‑94 (MQ=60)

                                                                 GCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTAT                             <  SRR4302535.1324343/94‑1 (MQ=60)

                                                                 GCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTAT                             >  SRR4302535.832153/1‑94 (MQ=60)

                                                                 GCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTAT                             <  SRR4302535.2975440/94‑1 (MQ=60)

                                                                  CTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATG                            >  SRR4302535.920883/1‑94 (MQ=60)

                                                                  CTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATG                            <  SRR4302535.1981541/94‑1 (MQ=60)

                                                                   TGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGA                           >  SRR4302535.2906592/1‑94 (MQ=60)

                                                                   TGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGA                           >  SRR4302535.3252608/1‑94 (MQ=60)

                                                                   TGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGA                           >  SRR4302535.2402711/1‑94 (MQ=60)

                                                                     ATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATC                         >  SRR4302535.1759024/1‑94 (MQ=60)

                                                                     ATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATC                         <  SRR4302535.706817/94‑1 (MQ=60)

                                                                     ATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATC                         >  SRR4302535.1512400/1‑94 (MQ=60)

                                                                     ATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATC                         <  SRR4302535.53300/94‑1 (MQ=60)

                                                                     ATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATC                         <  SRR4302535.2257876/94‑1 (MQ=60)

                                                                      TTCATGACACCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCA                        <  SRR4302535.520873/94‑1 (MQ=60)

                                                                       TTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAG                       >  SRR4302535.263853/1‑94 (MQ=60)

                                                                       TTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAG                       <  SRR4302535.729047/94‑1 (MQ=60)

                                                                       TTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAG                       >  SRR4302535.924018/1‑94 (MQ=60)

                                                                        TATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGG                      >  SRR4302535.4128035/1‑94 (MQ=60)

                                                                        TATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGG                      >  SRR4302535.1435238/1‑94 (MQ=60)

                                                                         ATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGT                     >  SRR4302535.4646405/1‑94 (MQ=60)

                                                                          TGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTC                    >  SRR4302535.3285632/1‑94 (MQ=60)

                                                                           GACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCA                   <  SRR4302535.1943983/94‑1 (MQ=60)

                                                                           GACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCA                   <  SRR4302535.47459/94‑1 (MQ=60)

                                                                            ACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCAC                  >  SRR4302535.1145615/1‑94 (MQ=60)

                                                                             CATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACC                 >  SRR4302535.3182285/1‑94 (MQ=60)

                                                                              ATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCG                >  SRR4302535.310259/1‑94 (MQ=60)

                                                                              ATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCG                >  SRR4302535.3950056/1‑94 (MQ=60)

                                                                                 ATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACC             >  SRR4302535.3250389/1‑94 (MQ=60)

                                                                                  TGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCA            >  SRR4302535.1282968/1‑94 (MQ=60)

                                                                                   GAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCAT           >  SRR4302535.1599863/1‑94 (MQ=60)

                                                                                   GAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCAT           >  SRR4302535.3121867/1‑94 (MQ=60)

                                                                                    AGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATT          <  SRR4302535.1176338/94‑1 (MQ=60)

                                                                                     GTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTT         <  SRR4302535.455289/94‑1 (MQ=60)

                                                                                     GTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTT         <  SRR4302535.1612558/94‑1 (MQ=60)

                                                                                     GTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTT         <  SRR4302535.2394713/94‑1 (MQ=60)

                                                                                      TAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTC        <  SRR4302535.3183647/94‑1 (MQ=60)

                                                                                       AAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCT       <  SRR4302535.1426081/94‑1 (MQ=60)

                                                                                        AGCGCTGTCTGCGCTGGGGCTATTCCTTTAGCGCCTTGCTGGCGGCGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTG      <  SRR4302535.3693025/94‑1 (MQ=60)

                                                                                        AGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTG      <  SRR4302535.4192758/94‑1 (MQ=60)

                                                                                        AGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTG      >  SRR4302535.3113274/1‑94 (MQ=60)

                                                                                        AGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTG      <  SRR4302535.886825/94‑1 (MQ=60)

                                                                                         GCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTTCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG     <  SRR4302535.3304752/94‑1 (MQ=60)

                                                                                         GCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG     <  SRR4302535.3668998/94‑1 (MQ=60)

                                                                                          CGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGA    <  SRR4302535.503286/94‑1 (MQ=60)

                                                                                           GCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGAC   >  SRR4302535.1147439/1‑94 (MQ=60)

                                                                                            CTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGACT  <  SRR4302535.4705216/94‑1 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGACT  >  NC_000913/4008897‑4009082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`