Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,017,557	A→G	E116G (GAG→GGG)	yigP →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,017,557	0	A	G	100.0%	761.8 / NA	246	E116G (GAG→GGG)	yigP	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (111/135); total (111/135)

Only 100 of 257 total aligned reads displayed.

AGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGAGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCC  >  NC_000913/4017467‑4017646

agcTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGt                                                                                         >  1:4453343/1‑93 (MQ=255)

agcTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGt                                                                                         <  1:2693311/93‑1 (MQ=255)

 gcTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGtt                                                                                        <  1:4647111/93‑1 (MQ=255)

 gcTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGtt                                                                                        >  2:3525406/1‑93 (MQ=255)

    tACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGa                                                                                     <  1:2838491/93‑1 (MQ=255)

    tACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGa                                                                                     >  1:1021313/1‑93 (MQ=255)

       cGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGAccc                                                                                  <  2:807056/93‑1 (MQ=255)

       cGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGAccc                                                                                  <  1:3840988/93‑1 (MQ=255)

       cGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGAccc                                                                                  <  2:1962829/93‑1 (MQ=255)

        gCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCt                                                                                 <  1:3085369/93‑1 (MQ=255)

        gCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCt                                                                                 >  1:1581464/1‑93 (MQ=255)

         cACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTg                                                                                <  1:768115/93‑1 (MQ=255)

          aCTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTTGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGc                                                                               >  2:4178840/1‑93 (MQ=255)

          aCTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGc                                                                               >  2:4364404/1‑93 (MQ=255)

          aCTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGc                                                                               <  1:3503765/93‑1 (MQ=255)

           cTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCg                                                                              >  2:1517790/1‑93 (MQ=255)

           cTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCg                                                                              >  1:3409085/1‑93 (MQ=255)

            tGATTCGCAGCGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCgg                                                                             >  2:2310579/1‑93 (MQ=255)

             gATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGa                                                                            <  1:421544/93‑1 (MQ=255)

               ttCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAAc                                                                          <  2:63150/93‑1 (MQ=255)

                 cGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAActg                                                                        <  1:3682145/93‑1 (MQ=255)

                  gCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAActgc                                                                       >  1:996669/1‑93 (MQ=255)

                   cAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAActgct                                                                      >  1:2894140/1‑93 (MQ=255)

                   cAGTGCTTAGCTGTAAGTGCAGCACGATATTCAGGTGGTGCAAAGTTTCGTTGCGCTGACAGATATGGCAGGTTTCGTCCCTGCTGAActggt                                                                      <  2:3814771/93‑3 (MQ=255)

                    aGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGGCCCTGCGGAActgctg                                                                     >  1:1222341/1‑93 (MQ=255)

                     gtggtgAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTCCGGAACTGCTgg                                                                    >  2:2661125/1‑93 (MQ=255)

                       ggtgAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGcc                                                                  >  1:1333677/1‑93 (MQ=255)

                        gtgAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGccc                                                                 <  1:1729844/93‑1 (MQ=255)

                          gAGCGGGAAGTGCAGGGGGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGTTTCGACCCTGCGGAACTGCTGGCCCCt                                                               <  2:3440533/93‑1 (MQ=255)

                            gCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTta                                                             >  1:3513750/1‑93 (MQ=255)

                               ggcaGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATAc                                                          <  2:104261/90‑1 (MQ=255)

                               ggAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATAc                                                          >  1:558376/1‑93 (MQ=255)

                               ggAAGCGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATAc                                                          <  2:3031732/93‑1 (MQ=255)

                                  aGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCgg                                                       >  1:1538343/1‑93 (MQ=255)

                                  aGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCgg                                                       >  1:3005440/1‑93 (MQ=255)

                                   gTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGt                                                      <  1:629446/93‑1 (MQ=255)

                                   gTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGt                                                      <  1:2043502/93‑1 (MQ=255)

                                    tGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTg                                                     >  2:2902550/1‑93 (MQ=255)

                                       aGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGata                                                  <  1:2126016/93‑1 (MQ=255)

                                       aGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGata                                                  <  2:4296959/93‑1 (MQ=255)

                                       aGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGata                                                  <  1:1939487/93‑1 (MQ=255)

                                         ggCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATc                                                >  2:4262056/1‑93 (MQ=255)

                                            gATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATcgcc                                             >  2:2727284/1‑93 (MQ=255)

                                            gATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATcgcc                                             >  1:3994859/1‑93 (MQ=255)

                                             atatTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATcgccg                                            >  1:3857447/1‑93 (MQ=255)

                                              tatTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATcgccgc                                           <  2:1588202/93‑1 (MQ=255)

                                               atTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCt                                          <  2:2491543/93‑1 (MQ=255)

                                               atTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCt                                          >  1:3328937/1‑93 (MQ=255)

                                                 tCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGa                                        <  2:2871340/93‑1 (MQ=255)

                                                  cAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGaa                                       <  1:3741485/93‑1 (MQ=255)

                                                   aGGTGGTGCAAAAGTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGCCCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAg                                      <  2:1826118/93‑1 (MQ=255)

                                                   aGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAg                                      <  1:4269974/93‑1 (MQ=255)

                                                   aGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAg                                      <  2:135401/93‑1 (MQ=255)

                                                   aGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAg                                      <  2:4035061/93‑1 (MQ=255)

                                                    ggtggtGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAgg                                     <  2:133216/93‑1 (MQ=255)

                                                     gtggtgCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGa                                    >  1:2279970/1‑93 (MQ=255)

                                                      tggtgCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGaa                                   <  1:4382223/93‑1 (MQ=255)

                                                        gtgCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATc                                 <  2:2553719/93‑1 (MQ=255)

                                                        gtgCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATc                                 >  2:4633240/1‑93 (MQ=255)

                                                         tgCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCa                                >  2:2599772/1‑93 (MQ=255)

                                                         tccAAAACTTCGTGGCGCTGGCAGACCTGACAGTGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGTTGATATCGCCCCTGAAGGAATCa                                <  2:3948538/91‑1 (MQ=255)

                                                           cAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGc                              <  1:2746391/93‑1 (MQ=255)

                                                           cAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGc                              <  1:2009410/93‑1 (MQ=255)

                                                            aaaaCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCa                             >  2:1604640/1‑93 (MQ=255)

                                                            aaaaCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCa                             <  1:83325/93‑1 (MQ=255)

                                                             aaaCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCaa                            >  1:2030495/1‑93 (MQ=255)

                                                             aaaCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCaa                            <  2:2150749/93‑1 (MQ=255)

                                                             aaaCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCaa                            >  2:3637990/1‑93 (MQ=255)

                                                             aaaCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCaa                            >  1:105329/1‑93 (MQ=255)

                                                              aaCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCaaa                           >  1:1859369/1‑93 (MQ=255)

                                                                cTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGc                         <  2:4115825/93‑1 (MQ=255)

                                                                cTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGc                         >  1:714770/1‑93 (MQ=255)

                                                                attCGTTGCGCCTGCAGGTCGGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTAAACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGc                         <  1:2175918/92‑1 (MQ=255)

                                                                  tCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCa                       <  2:3087459/93‑1 (MQ=255)

                                                                  tCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCa                       <  1:3922128/93‑1 (MQ=255)

                                                                    gTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATg                     <  2:4226557/93‑1 (MQ=255)

                                                                    gTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATg                     >  1:2659022/1‑93 (MQ=255)

                                                                     ttGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATgc                    <  1:3123316/93‑1 (MQ=255)

                                                                          cTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGa               <  1:1120807/93‑1 (MQ=255)

                                                                          cTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGa               >  1:1791441/1‑93 (MQ=255)

                                                                          cTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGa               <  1:4577265/93‑1 (MQ=255)

                                                                          cTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGa               <  1:4322574/93‑1 (MQ=255)

                                                                           tGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAg              <  2:1479209/93‑1 (MQ=255)

                                                                            ggCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGTGGAgg             <  1:1651797/93‑1 (MQ=255)

                                                                            ggCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGACATGCGCGGAgg             >  2:3330571/1‑93 (MQ=255)

                                                                             gCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGgc            <  2:1810703/93‑1 (MQ=255)

                                                                             gCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGgc            <  1:257142/93‑1 (MQ=255)

                                                                                gATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCa         >  1:2408109/1‑93 (MQ=255)

                                                                                  tCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCaag       >  2:1394921/1‑92 (MQ=255)

                                                                                  tCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCaaa       <  1:3216329/93‑1 (MQ=255)

                                                                                  tCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCaaa       <  2:3113168/93‑1 (MQ=255)

                                                                                  tCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCaaa       <  2:9139/93‑1 (MQ=255)

                                                                                   cTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAg      <  2:561064/93‑1 (MQ=255)

                                                                                    tGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGt     >  1:1406757/1‑93 (MQ=255)

                                                                                     ggCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGtt    <  2:3236650/93‑1 (MQ=255)

                                                                                     ggCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGtt    >  2:4557441/1‑93 (MQ=255)

                                                                                      gCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTc   >  1:3588507/1‑93 (MQ=255)

                                                                                       cAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTcc  <  2:4468397/93‑1 (MQ=255)

                                                                                       cAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTcc  >  2:693723/1‑93 (MQ=255)

                                                                                       cAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTcc  <  2:2251095/93‑1 (MQ=255)

AGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGAGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCC  >  NC_000913/4017467‑4017646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGAGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCCTGCA  >  NC_000913/4017464‑4017650

AGCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGG                                                                                               >  SRR4302535.3929869/1‑94 (MQ=60)

AGCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGG                                                                                               <  SRR4302535.823077/94‑1 (MQ=60)

AGCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGG                                                                                               <  SRR4302535.590562/94‑1 (MQ=60)

 GCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGG                                                                                              <  SRR4302535.2271883/94‑1 (MQ=60)

 GCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGG                                                                                              >  SRR4302535.2922943/1‑94 (MQ=60)

 GCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGG                                                                                              >  SRR4302535.4440242/1‑94 (MQ=60)

  CAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGT                                                                                             >  SRR4302535.4483884/1‑94 (MQ=60)

   AGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTT                                                                                            <  SRR4302535.2712559/94‑1 (MQ=60)

   AGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTT                                                                                            <  SRR4302535.2712558/94‑1 (MQ=60)

   AGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTT                                                                                            >  SRR4302535.2054482/1‑94 (MQ=60)

    GCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTC                                                                                           <  SRR4302535.4678593/94‑1 (MQ=60)

    GCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTC                                                                                           >  SRR4302535.311978/1‑94 (MQ=60)

    GCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTC                                                                                           <  SRR4302535.2808879/94‑1 (MQ=60)

     CTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCG                                                                                          >  SRR4302535.1610364/1‑94 (MQ=60)

      TTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGA                                                                                         >  SRR4302535.1028571/1‑94 (MQ=60)

       TACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGAC                                                                                        <  SRR4302535.203591/94‑1 (MQ=60)

       TACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGAC                                                                                        <  SRR4302535.2858629/94‑1 (MQ=60)

         CCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCC                                                                                      >  SRR4302535.1693892/1‑94 (MQ=60)

          CGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCT                                                                                     <  SRR4302535.3867454/94‑1 (MQ=60)

          CGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCT                                                                                     >  SRR4302535.1592879/1‑94 (MQ=60)

          CGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCT                                                                                     <  SRR4302535.1002499/94‑1 (MQ=60)

          CGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCT                                                                                     <  SRR4302535.1194435/94‑1 (MQ=60)

           GCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTG                                                                                    <  SRR4302535.3106862/94‑1 (MQ=60)

           GCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTG                                                                                    >  SRR4302535.4323272/1‑94 (MQ=60)

            CACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGC                                                                                   <  SRR4302535.773522/94‑1 (MQ=60)

            CACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGC                                                                                   >  SRR4302535.825222/1‑94 (MQ=60)

             ACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAATCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCG                                                                                  <  SRR4302535.388228/94‑1 (MQ=60)

             ACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCG                                                                                  >  SRR4302535.3432811/1‑94 (MQ=60)

             ACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCG                                                                                  >  SRR4302535.2966262/1‑94 (MQ=60)

             ACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCG                                                                                  <  SRR4302535.3528116/94‑1 (MQ=60)

              CTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGG                                                                                 <  SRR4302535.2118807/94‑1 (MQ=60)

              CTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGG                                                                                 >  SRR4302535.4363423/1‑94 (MQ=60)

               TGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGA                                                                                >  SRR4302535.3068803/1‑94 (MQ=60)

               TGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGA                                                                                >  SRR4302535.953244/1‑94 (MQ=60)

                GATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAA                                                                               <  SRR4302535.424489/94‑1 (MQ=60)

                  TTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACT                                                                             <  SRR4302535.3520057/94‑1 (MQ=60)

                    CGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGC                                                                           >  SRR4302535.1003746/1‑94 (MQ=60)

                    CGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGC                                                                           <  SRR4302535.3707627/94‑1 (MQ=60)

                     GCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCT                                                                          <  SRR4302535.3767500/94‑1 (MQ=60)

                     GCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCT                                                                          >  SRR4302535.2914610/1‑94 (MQ=60)

                     GCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCT                                                                          <  SRR4302535.1794034/94‑1 (MQ=60)

                      CAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGGCCCTGCGGAACTGCTG                                                                         >  SRR4302535.1231093/1‑94 (MQ=60)

                        GTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGC                                                                       >  SRR4302535.2143390/1‑94 (MQ=60)

                         TGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCC                                                                      >  SRR4302535.1343190/1‑94 (MQ=60)

                         TGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCC                                                                      <  SRR4302535.3272997/94‑1 (MQ=60)

                           GTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCC                                                                    <  SRR4302535.1742347/94‑1 (MQ=60)

                              AGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTA                                                                 >  SRR4302535.3538167/1‑94 (MQ=60)

                               GCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAATCTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTAT                                                                <  SRR4302535.650891/94‑1 (MQ=60)

                                CTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATA                                                               <  SRR4302535.1440400/94‑1 (MQ=60)

                                CTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATA                                                               >  SRR4302535.2904667/1‑94 (MQ=60)

                                 TGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATAC                                                              >  SRR4302535.264060/1‑94 (MQ=60)

                                 TGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATAC                                                              >  SRR4302535.562281/1‑94 (MQ=60)

                                  GGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACC                                                             <  SRR4302535.1364655/94‑1 (MQ=60)

                                   GAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCG                                                            <  SRR4302535.4450561/94‑1 (MQ=60)

                                   GAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCG                                                            <  SRR4302535.4691473/94‑1 (MQ=60)

                                    AAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGG                                                           >  SRR4302535.4397116/1‑94 (MQ=60)

                                    AAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGG                                                           >  SRR4302535.3026502/1‑94 (MQ=60)

                                    AAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGG                                                           >  SRR4302535.1549430/1‑94 (MQ=60)

                                      GTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTG                                                         <  SRR4302535.2058223/94‑1 (MQ=60)

                                      GTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTG                                                         <  SRR4302535.633834/94‑1 (MQ=60)

                                      GTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTG                                                         <  SRR4302535.3070502/94‑1 (MQ=60)

                                          AGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATAT                                                     <  SRR4302535.1953456/94‑1 (MQ=60)

                                          AGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATAT                                                     >  SRR4302535.3726127/1‑94 (MQ=60)

                                          AGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATAT                                                     <  SRR4302535.2141339/94‑1 (MQ=60)

                                           GGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATC                                                    <  SRR4302535.559745/94‑1 (MQ=60)

                                            GGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCG                                                   >  SRR4302535.3472791/1‑94 (MQ=60)

                                            GGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCG                                                   >  SRR4302535.2683489/1‑94 (MQ=60)

                                              CGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCC                                                 >  SRR4302535.254376/1‑94 (MQ=60)

                                              CGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCC                                                 >  SRR4302535.4022191/1‑94 (MQ=60)

                                               GATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCG                                                >  SRR4302535.3884001/1‑94 (MQ=60)

                                                 TATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGTCCCTGCGGAACTTCTGGCCCCTTATACCGGTGATATCGCCGCT                                              <  SRR4302535.2685495/94‑1 (MQ=60)

                                                 TATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCT                                              <  SRR4302535.406479/94‑1 (MQ=60)

                                                 TATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCT                                              >  SRR4302535.3352095/1‑94 (MQ=60)

                                                 TATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTCGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCT                                              >  SRR4302535.4292369/1‑94 (MQ=60)

                                                  ATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTG                                             >  SRR4302535.3588118/1‑94 (MQ=60)

                                                  ATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTG                                             >  SRR4302535.759006/1‑94 (MQ=60)

                                                     CAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAG                                          <  SRR4302535.3767376/94‑1 (MQ=60)

                                                     CAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAG                                          <  SRR4302535.2210077/94‑1 (MQ=60)

                                                      AGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGG                                         <  SRR4302535.4299208/94‑1 (MQ=60)

                                                      AGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGG                                         <  SRR4302535.3181425/94‑1 (MQ=60)

                                                      AGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGG                                         <  SRR4302535.4316631/94‑1 (MQ=60)

                                                      AGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGG                                         >  SRR4302535.357372/1‑94 (MQ=60)

                                                       GGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGA                                        >  SRR4302535.396692/1‑94 (MQ=60)

                                                       GGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGA                                        <  SRR4302535.2094847/94‑1 (MQ=60)

                                                       GGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGA                                        >  SRR4302535.2296254/1‑94 (MQ=60)

                                                         TGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAAT                                      >  SRR4302535.1608346/1‑94 (MQ=60)

                                                         TGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAAT                                      <  SRR4302535.1804775/94‑1 (MQ=60)

                                                         TGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAAT                                      <  SRR4302535.4412203/94‑1 (MQ=60)

                                                          GGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATC                                     <  SRR4302535.3694729/94‑1 (MQ=60)

                                                            TGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAG                                   <  SRR4302535.1667522/94‑1 (MQ=60)

                                                            GGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAG                                   <  SRR4302535.124539/94‑1 (MQ=60)

                                                             GCAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGC                                  <  SRR4302535.712763/94‑1 (MQ=60)

                                                              CAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCA                                 <  SRR4302535.2023878/94‑1 (MQ=60)

                                                              CAAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCA                                 <  SRR4302535.2765965/94‑1 (MQ=60)

                                                               AAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAA                                <  SRR4302535.83913/94‑1 (MQ=60)

                                                               AAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAA                                >  SRR4302535.106076/1‑94 (MQ=60)

                                                               AAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAA                                >  SRR4302535.39066/1‑94 (MQ=60)

                                                               AAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAA                                <  SRR4302535.235940/94‑1 (MQ=60)

                                                               AAAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAA                                >  SRR4302535.2045130/1‑94 (MQ=60)

                                                                AAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAA                               <  SRR4302535.3175660/94‑1 (MQ=60)

                                                                AAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAA                               >  SRR4302535.1872774/1‑94 (MQ=60)

                                                                AAACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAA                               <  SRR4302535.275693/94‑1 (MQ=60)

                                                                 AACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAG                              <  SRR4302535.3405052/94‑1 (MQ=60)

                                                                 AACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAG                              >  SRR4302535.4585227/1‑94 (MQ=60)

                                                                  ACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGC                             <  SRR4302535.4151803/94‑1 (MQ=60)

                                                                  ACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGC                             >  SRR4302535.719787/1‑94 (MQ=60)

                                                                  ACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGC                             >  SRR4302535.111832/1‑94 (MQ=60)

                                                                  ACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGC                             <  SRR4302535.1461747/94‑1 (MQ=60)

                                                                  ACTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGC                             >  SRR4302535.2224433/1‑94 (MQ=60)

                                                                   CTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCC                            >  SRR4302535.1905054/1‑94 (MQ=60)

                                                                   CTTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCC                            >  SRR4302535.3728274/1‑94 (MQ=60)

                                                                   ATTCGTTGCGCCTGCAGGTCGGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTAAACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCC                            <  SRR4302535.2191473/94‑1 (MQ=60)

                                                                    TTCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCA                           >  SRR4302535.3335189/1‑94 (MQ=60)

                                                                     TCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCAT                          <  SRR4302535.1054896/94‑1 (MQ=60)

                                                                     TCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCAT                          <  SRR4302535.3948939/94‑1 (MQ=60)

                                                                     TCGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCAT                          >  SRR4302535.1274794/1‑94 (MQ=60)

                                                                      CGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATG                         >  SRR4302535.1821454/1‑94 (MQ=60)

                                                                      CGTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATG                         >  SRR4302535.2678072/1‑94 (MQ=60)

                                                                       GTTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGC                        >  SRR4302535.2898747/1‑94 (MQ=60)

                                                                        TTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCG                       <  SRR4302535.4586158/94‑1 (MQ=60)

                                                                        TTGCGCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCG                       <  SRR4302535.3145068/94‑1 (MQ=60)

                                                                            GCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGA                   >  SRR4302535.1804394/1‑94 (MQ=60)

                                                                            GCTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGA                   >  SRR4302535.1592008/1‑94 (MQ=60)

                                                                             CTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAG                  <  SRR4302535.4352144/94‑1 (MQ=60)

                                                                             CTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAG                  <  SRR4302535.4608450/94‑1 (MQ=60)

                                                                             CTGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAG                  <  SRR4302535.1128799/94‑1 (MQ=60)

                                                                              TGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGG                 >  SRR4302535.578884/1‑94 (MQ=60)

                                                                              TGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGG                 <  SRR4302535.3530164/94‑1 (MQ=60)

                                                                              TGGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGG                 <  SRR4302535.2020725/94‑1 (MQ=60)

                                                                               GGCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGTGGAGGC                <  SRR4302535.1663742/94‑1 (MQ=60)

                                                                                GCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCG               <  SRR4302535.2006080/94‑1 (MQ=60)

                                                                                GCAGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCG               <  SRR4302535.258917/94‑1 (MQ=60)

                                                                                  AGATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCA             >  SRR4302535.2425445/1‑94 (MQ=60)

                                                                                   GATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAA            >  SRR4302535.4633085/1‑94 (MQ=60)

                                                                                    ATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAA           <  SRR4302535.726489/94‑1 (MQ=60)

                                                                                    ATCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAA           >  SRR4302535.1100271/1‑94 (MQ=60)

                                                                                     TCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAG          <  SRR4302535.3238607/94‑1 (MQ=60)

                                                                                     TCTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAG          >  SRR4302535.3805616/1‑94 (MQ=60)

                                                                                      CTGGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGT         >  SRR4302535.1416807/1‑94 (MQ=60)

                                                                                       TGGCAGGGTTCGACCCGGCGGAACTGCTGGCCCCTTATGCCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGGGCGGAGGCGCAAAGTT        <  SRR4302535.2465117/94‑1 (MQ=60)

                                                                                        GGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTC       >  SRR4302535.3613399/1‑94 (MQ=60)

                                                                                        GGCAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTC       >  SRR4302535.3935479/1‑94 (MQ=60)

                                                                                          CAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCCT     >  SRR4302535.3631377/1‑94 (MQ=60)

                                                                                          CAGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCCT     <  SRR4302535.2046009/94‑1 (MQ=60)

                                                                                           AGTGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCCTG    <  SRR4302535.563195/94‑1 (MQ=60)

                                                                                           AGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCCTG    >  SRR4302535.2977881/1‑94 (MQ=60)

                                                                                           AGGGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCCTG    <  SRR4302535.140186/94‑1 (MQ=60)

                                                                                             GGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGTGCGGAGGCGCAAAGTTCCTGCA  <  SRR4302535.2245717/94‑1 (MQ=60)

AGCAGCTTACCGCACTGATTCGCAGTGGTGAGCTGGAAGTGCAGGGCGATATTCAGGTGGTGCAAAACTTCGTTGCGCTGGCAGATCTGGCAGAGTTCGACCCTGCGGAACTGCTGGCCCCTTATACCGGTGATATCGCCGCTGAAGGAATCAGCAAAGCCATGCGCGGAGGCGCAAAGTTCCTGCA  >  NC_000913/4017464‑4017650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`