Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,076,069 |
T→C |
intergenic (+51/‑775) |
yiiD → / → yiiE |
putative acetyltransferase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,076,069 | 0 | T | C | 100.0%
| 428.4
/ NA
| 134 | intergenic (+51/‑775) | yiiD/yiiE | putative acetyltransferase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/100); total (34/100) |
Only 100 of 137 total aligned reads displayed.
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAG > NC_000913/4075979‑4076158
|
aTTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc < 1:3537564/93‑1 (MQ=255)
aTTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc < 1:343147/93‑1 (MQ=255)
aTTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc < 1:2639404/93‑1 (MQ=255)
tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt < 1:1881699/93‑1 (MQ=255)
tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt < 1:189263/93‑1 (MQ=255)
tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt > 1:1913992/1‑93 (MQ=255)
ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt < 2:1510322/93‑1 (MQ=255)
ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt < 1:2944185/93‑1 (MQ=255)
ggCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGTTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTgg < 2:120681/93‑1 (MQ=255)
gCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGc < 1:3051689/93‑1 (MQ=255)
gCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGc < 2:1056340/93‑1 (MQ=255)
cccGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCt < 2:3086820/93‑1 (MQ=255)
ccGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTa < 1:504125/93‑1 (MQ=255)
ccGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTa < 1:298421/93‑1 (MQ=255)
cGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAt < 2:3651365/93‑1 (MQ=255)
gTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAtt < 2:636268/93‑1 (MQ=255)
tATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAttt < 1:4061935/93‑1 (MQ=255)
tATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAttt < 2:2459428/93‑1 (MQ=255)
gaTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGATAGGGGCGGTGCTGCCTGGCTCATTCAGGTCATTTATATTAGCCCTTGGCTAttt < 2:120047/92‑1 (MQ=255)
aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc < 2:2761438/93‑1 (MQ=255)
aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc > 1:536391/1‑93 (MQ=255)
aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc < 1:2111733/93‑1 (MQ=255)
tGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCg > 2:2948090/1‑93 (MQ=255)
tGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCg > 2:2234432/1‑93 (MQ=255)
tGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCg < 1:612813/93‑1 (MQ=255)
gAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCgg > 1:1480552/1‑93 (MQ=255)
agagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGtt > 1:2555271/1‑93 (MQ=255)
gagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTta < 1:2825635/93‑1 (MQ=255)
gagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTta < 2:1836482/93‑1 (MQ=255)
gggCTGGAACGAAGAAGAGTAGCTGATGGAGAGGGTCGTTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata < 2:3622266/93‑1 (MQ=255)
gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata < 1:3141414/93‑1 (MQ=255)
gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata < 1:636424/93‑1 (MQ=255)
gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata < 1:1808457/93‑1 (MQ=255)
gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATGCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata < 2:1975699/93‑1 (MQ=255)
gCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAtt < 1:3157625/93‑1 (MQ=255)
gCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAtt < 2:1723780/93‑1 (MQ=255)
cGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTa < 1:3249066/93‑1 (MQ=255)
gggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaa > 2:2790888/1‑93 (MQ=255)
ggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaaa < 1:3412878/93‑1 (MQ=255)
ggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaaa < 1:2687317/93‑1 (MQ=255)
gcaaCGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaaa < 1:2302226/91‑1 (MQ=255)
cGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAg > 2:3187042/1‑93 (MQ=255)
cGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAg < 1:452382/93‑1 (MQ=255)
gaagaaGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGa < 1:1248497/93‑1 (MQ=255)
aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa < 2:76948/93‑1 (MQ=255)
aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa < 1:4311881/93‑1 (MQ=255)
aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa > 1:1568393/1‑93 (MQ=255)
agaagaGTAGGTGATGGAGAGGGGCGGTGCTCCCTCTCTCATTCAGGTCATTTATATGAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAc < 2:1331658/93‑1 (MQ=255)
agaagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAc > 2:3773529/1‑93 (MQ=255)
agaagaGTAGCTGATGGAGAGGGGCGGTGCTACCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAc < 2:811890/93‑1 (MQ=255)
agaagaGTAGCTGATGGAGAGGGCCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAc < 1:2397102/93‑1 (MQ=255)
aagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActc < 2:4416028/93‑1 (MQ=255)
aagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActc > 2:2150918/1‑93 (MQ=255)
aagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActc < 1:3708061/93‑1 (MQ=255)
agagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActct < 2:2717002/93‑1 (MQ=255)
agagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActct < 2:3833392/93‑1 (MQ=255)
agagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActct < 1:3717687/93‑1 (MQ=255)
gagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCta < 2:3338245/93‑1 (MQ=255)
agTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCtat < 2:2705895/93‑1 (MQ=255)
gTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCtata > 2:1849677/1‑93 (MQ=255)
tAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaa < 1:2467183/93‑1 (MQ=255)
aGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaaa < 1:2731161/93‑1 (MQ=255)
aGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaaa > 2:566495/1‑93 (MQ=255)
gCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAt < 1:2392661/93‑1 (MQ=255)
gATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAtttt < 2:1043819/93‑1 (MQ=255)
gATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAtttt > 1:4223175/1‑93 (MQ=255)
aTGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAttttt < 1:2647502/93‑1 (MQ=255)
aTGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAttttt < 1:3459368/93‑1 (MQ=255)
agagGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttc < 2:3905876/93‑1 (MQ=255)
agagGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttc < 2:4121664/93‑1 (MQ=255)
agagGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttc < 2:4303395/93‑1 (MQ=255)
ggggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttcttc > 2:2405588/1‑93 (MQ=255)
ggggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttcttc < 2:2607737/93‑1 (MQ=255)
ggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGt > 1:3738915/1‑93 (MQ=255)
ggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGt > 2:1024358/1‑93 (MQ=255)
cGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTg < 1:3008955/93‑1 (MQ=255)
tgctgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCt < 2:3966354/93‑1 (MQ=255)
tgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCa < 1:325209/93‑1 (MQ=255)
tgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCa > 1:2468834/1‑93 (MQ=255)
gcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCAt > 1:4036460/1‑93 (MQ=255)
tctctcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACg < 1:568811/93‑1 (MQ=255)
tctctcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACg > 2:4401964/1‑93 (MQ=255)
tctctcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACg < 2:4203053/93‑1 (MQ=255)
tctcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACgtg < 2:196378/93‑1 (MQ=255)
tcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTGCGTTGGCTCCATACGTGTc < 2:4574178/93‑1 (MQ=255)
cATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCt < 1:1440664/93‑1 (MQ=255)
ggTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCATGCTAc < 2:3902323/93‑1 (MQ=255)
tCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACAt > 2:3262405/1‑93 (MQ=255)
tCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACAt < 2:3753507/93‑1 (MQ=255)
tCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACAt > 2:1555379/1‑93 (MQ=255)
cATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATc > 1:1142475/1‑93 (MQ=255)
tttATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAc > 1:4467580/1‑93 (MQ=255)
tttATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAc < 2:1656642/93‑1 (MQ=255)
tataTTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTg < 2:2164965/93‑1 (MQ=255)
atatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGt > 2:2070713/1‑93 (MQ=255)
atatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGt < 2:1182165/93‑1 (MQ=255)
atatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGt < 1:1251424/93‑1 (MQ=255)
tatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGtt < 1:3547588/93‑1 (MQ=255)
ttAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCa > 2:3074495/1‑93 (MQ=255)
tAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAg < 2:1348580/93‑1 (MQ=255)
|
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAG > NC_000913/4075979‑4076158
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGGAG > NC_000913/4075978‑4076161
|
CATTGGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCC < SRR4302535.406638/94‑1 (MQ=60)
CATGTGGCGCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCC < SRR4302535.76433/94‑1 (MQ=60)
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT < SRR4302535.345519/94‑1 (MQ=60)
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT < SRR4302535.3562122/94‑1 (MQ=60)
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT < SRR4302535.2658312/94‑1 (MQ=60)
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT > SRR4302535.1580016/1‑94 (MQ=60)
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT > SRR4302535.1927786/1‑94 (MQ=60)
TTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTT < SRR4302535.190570/94‑1 (MQ=60)
TTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTT < SRR4302535.1895262/94‑1 (MQ=60)
TTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTG < SRR4302535.3246703/94‑1 (MQ=60)
TTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTG < SRR4302535.2964881/94‑1 (MQ=60)
GCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCT < SRR4302535.3073065/94‑1 (MQ=60)
GCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCT < SRR4302535.562247/94‑1 (MQ=60)
CCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAT < SRR4302535.507649/94‑1 (MQ=60)
CCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAT < SRR4302535.300502/94‑1 (MQ=60)
TATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTC > SRR4302535.540138/1‑94 (MQ=60)
TATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTC < SRR4302535.4089737/94‑1 (MQ=60)
ATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCG < SRR4302535.2126977/94‑1 (MQ=60)
ATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCG < SRR4302535.3490291/94‑1 (MQ=60)
TGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGG < SRR4302535.1913227/94‑1 (MQ=60)
TGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGG < SRR4302535.617075/94‑1 (MQ=60)
TGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGG > SRR4302535.1491142/1‑94 (MQ=60)
AAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTT > SRR4302535.2573673/1‑94 (MQ=60)
GAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTAT < SRR4302535.2845691/94‑1 (MQ=60)
GGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAT < SRR4302535.3163272/94‑1 (MQ=60)
GGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAT < SRR4302535.640861/94‑1 (MQ=60)
GGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAT < SRR4302535.1821546/94‑1 (MQ=60)
GCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTA < SRR4302535.3179545/94‑1 (MQ=60)
CGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAA < SRR4302535.3271637/94‑1 (MQ=60)
GGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAA > SRR4302535.2607771/1‑94 (MQ=60)
GGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAT < SRR4302535.2706527/94‑1 (MQ=60)
GGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAT < SRR4302535.4591334/94‑1 (MQ=60)
GGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAT < SRR4302535.3436625/94‑1 (MQ=60)
GCAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAT < SRR4302535.2318699/94‑1 (MQ=60)
AACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAA > SRR4302535.2443212/1‑94 (MQ=60)
ACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAG < SRR4302535.1342188/94‑1 (MQ=60)
CGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGA > SRR4302535.2668685/1‑94 (MQ=60)
CGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGA < SRR4302535.455550/94‑1 (MQ=60)
GAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAA < SRR4302535.1257406/94‑1 (MQ=60)
GAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAA > SRR4302535.1579712/1‑94 (MQ=60)
AAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAC < SRR4302535.4341377/94‑1 (MQ=60)
AAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGCTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAC < SRR4302535.3062703/94‑1 (MQ=60)
AGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACT < SRR4302535.2853243/94‑1 (MQ=60)
AGAAGAGTAGCTGATGGAGAGGGCCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACT < SRR4302535.2414331/94‑1 (MQ=60)
AAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCT < SRR4302535.3733736/94‑1 (MQ=60)
AGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTA < SRR4302535.3743448/94‑1 (MQ=60)
AGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATA < SRR4302535.4330699/94‑1 (MQ=60)
TAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAA < SRR4302535.2484968/94‑1 (MQ=60)
AGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAT < SRR4302535.2750659/94‑1 (MQ=60)
AGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAT < SRR4302535.3736698/94‑1 (MQ=60)
GCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATT < SRR4302535.2409860/94‑1 (MQ=60)
TGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTT > SRR4302535.4252071/1‑94 (MQ=60)
ATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTA < SRR4302535.2666466/94‑1 (MQ=60)
ATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTA < SRR4302535.3483419/94‑1 (MQ=60)
GGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGT > SRR4302535.3764792/1‑94 (MQ=60)
CGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGG < SRR4302535.3030031/94‑1 (MQ=60)
TGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTC < SRR4302535.840109/94‑1 (MQ=60)
CTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCA > SRR4302535.2486630/1‑94 (MQ=60)
TGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCAT > SRR4302535.4064091/1‑94 (MQ=60)
TGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCAT < SRR4302535.327458/94‑1 (MQ=60)
TCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGT < SRR4302535.572806/94‑1 (MQ=60)
TCTCTCATTCAGGTCATGTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGT < SRR4302535.2167762/94‑1 (MQ=60)
CATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTT < SRR4302535.1450969/94‑1 (MQ=60)
ATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTG > SRR4302535.3313124/1‑94 (MQ=60)
TCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCT < SRR4302535.3803577/94‑1 (MQ=60)
TCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATC > SRR4302535.1150619/1‑94 (MQ=60)
ATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAC > SRR4302535.4498234/1‑94 (MQ=60)
ATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTT < SRR4302535.1260362/94‑1 (MQ=60)
TATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTC < SRR4302535.3572215/94‑1 (MQ=60)
GCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGGAG < SRR4302535.4035083/94‑1 (MQ=60)
GCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGGAG < SRR4302535.1884333/94‑1 (MQ=60)
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CATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGGAG > NC_000913/4075978‑4076161
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
