Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,175,949 |
+G |
intergenic (+82/‑76) |
nusG → / → rplK |
NusG/50S ribosomal subunit protein L11 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,175,947 | 1 | . | G | 99.5%
| 634.4
/ ‑3.9
| 199 | intergenic (+80/‑78) | nusG/rplK | NusG/50S ribosomal subunit protein L11 |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (87/111); total (87/112) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 219 total aligned reads displayed.
TGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA > NC_000913/4175855‑4176034
|
tGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt < 2:2210038/93‑1 (MQ=255)
gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g < 2:38130/93‑1 (MQ=255)
aaaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑g < 1:3071166/93‑1 (MQ=255)
aaaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑g > 1:2996892/1‑93 (MQ=255)
aaaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑g > 2:4654552/1‑93 (MQ=255)
aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑ggcc > 2:249211/1‑90 (MQ=255)
aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑ggcc > 1:3801375/1‑90 (MQ=255)
aGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑ggcct < 2:1743232/93‑5 (MQ=255)
aGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑ggcct < 1:4351977/93‑5 (MQ=255)
ccTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTg > 2:3650218/1‑93 (MQ=255)
cTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGc < 1:1848748/93‑1 (MQ=255)
cTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGc > 2:555937/1‑93 (MQ=255)
tAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGcc > 2:1574043/1‑93 (MQ=255)
aCCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCg > 2:2041540/1‑93 (MQ=255)
cccAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGt < 1:4062512/93‑1 (MQ=255)
cccAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGt > 1:2782138/1‑93 (MQ=255)
ccAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTa > 1:3509586/1‑93 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTaa < 1:4669351/93‑1 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTaa > 1:4172083/1‑93 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTaa < 2:4045363/93‑1 (MQ=255)
aGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTaaa < 1:4393712/93‑1 (MQ=255)
aGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTaaa > 2:3254397/1‑93 (MQ=255)
aGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTaaa < 2:2784815/93‑1 (MQ=255)
aGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTaaa > 2:3629336/1‑93 (MQ=255)
cGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATCCAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAAc < 1:1245985/93‑1 (MQ=255)
gATCAAAAAAGCGGCGCTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACg > 2:2808905/1‑93 (MQ=255)
aTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGa < 2:3487886/93‑1 (MQ=255)
aTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGa < 2:1680737/93‑1 (MQ=255)
aTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGa < 1:2114787/93‑1 (MQ=255)
tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGAt < 1:4371034/93‑1 (MQ=255)
aaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGAtttt > 2:2201867/1‑93 (MQ=255)
aaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGAttttt > 2:1893446/1‑93 (MQ=255)
aaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGAtttttt > 1:2562344/1‑93 (MQ=255)
aaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGAtttttt > 1:84816/1‑93 (MQ=255)
aaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTta > 2:1305055/1‑93 (MQ=255)
aaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTta < 2:3271090/93‑1 (MQ=255)
aaGCGGCGATTTAATCGTTGCACAACGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTta < 1:4529492/93‑1 (MQ=255)
aGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTtat < 1:1433913/93‑1 (MQ=255)
aGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTtat < 2:2198192/93‑1 (MQ=255)
gcggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTtata < 2:3867712/93‑1 (MQ=255)
ggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATc < 1:2990353/93‑1 (MQ=255)
gcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCa < 1:386201/93‑1 (MQ=255)
cgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCAc < 1:546045/93‑1 (MQ=255)
cgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCAc > 1:2402918/1‑93 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACg < 2:3612614/93‑1 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACg > 2:4422533/1‑93 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACg > 2:2550771/1‑93 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGTCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACgg < 1:703297/93‑1 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACgg < 1:4208349/93‑1 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACgg < 2:360507/93‑1 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACgg > 2:911616/1‑93 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGACTTTTTATATTACgg > 2:951681/1‑93 (MQ=255)
tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACggg > 1:367997/1‑93 (MQ=255)
cGTTGCACAAGGCGTCAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCct < 1:1103607/93‑1 (MQ=255)
gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc < 2:64636/93‑1 (MQ=255)
ttGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATAACGGGGAGCctct > 2:41395/1‑93 (MQ=255)
gCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCa > 2:1779944/1‑93 (MQ=255)
gCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCa > 2:2281359/1‑93 (MQ=255)
acaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga > 2:3726046/1‑93 (MQ=255)
acaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga < 2:3092842/93‑1 (MQ=255)
aaGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAgg > 1:3003018/1‑93 (MQ=255)
aGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc > 1:2077649/1‑93 (MQ=255)
agaTTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAGACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatta < 1:3303955/93‑1 (MQ=255)
aTTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAcc > 2:4272690/1‑93 (MQ=255)
ttGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAccc > 1:1646746/1‑93 (MQ=255)
ttGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAccc > 2:2904874/1‑93 (MQ=255)
ttGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAccc < 1:1131404/93‑1 (MQ=255)
tGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa < 1:610749/93‑1 (MQ=255)
ggAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa < 1:1559057/93‑1 (MQ=255)
gAATACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAAc < 1:2297672/93‑1 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGCTTTTTTATATCACGGGGAGCCTCTCAGAGGAGTTATTACCCAACt > 2:3442890/1‑93 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt < 2:1447143/93‑1 (MQ=255)
aTACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACtt > 2:2718798/1‑93 (MQ=255)
aTACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACtt < 2:72031/93‑1 (MQ=255)
aTACAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACtt < 2:4461360/93‑1 (MQ=255)
aCAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGa < 2:2980948/93‑1 (MQ=255)
aCAATTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATACCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGa < 2:3063993/93‑1 (MQ=255)
aaTTTCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg > 1:3165527/1‑93 (MQ=255)
atgtCGCTCGTTGTGTTTTTAT‑GAGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGa < 2:1919845/90‑1 (MQ=255)
tttCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa < 2:771275/93‑1 (MQ=255)
tttCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa < 2:1000085/93‑1 (MQ=255)
tttCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa < 2:4504036/93‑1 (MQ=255)
tttCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa > 2:3376969/1‑93 (MQ=255)
ttCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCCCGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAt < 1:3724207/93‑1 (MQ=255)
tCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAtt > 1:2977073/1‑93 (MQ=255)
tCGCGCCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAtt < 2:2770189/93‑1 (MQ=255)
gcgcCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTta > 1:1961265/1‑93 (MQ=255)
cgcCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtat > 2:2002079/1‑93 (MQ=255)
gcCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtata < 2:185632/93‑1 (MQ=255)
gcCTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtata < 1:2257857/93‑1 (MQ=255)
cTTTTGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt > 2:2898504/1‑93 (MQ=255)
ttttGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg > 1:2554484/1‑93 (MQ=255)
ttttGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg < 1:2698271/93‑1 (MQ=255)
ttttGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg < 1:3444476/93‑1 (MQ=255)
ttttGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg < 2:2626788/93‑1 (MQ=255)
ttGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGc < 2:3628825/93‑1 (MQ=255)
ttGTTTTTATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGc < 1:3349490/93‑1 (MQ=255)
tttttATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTaa > 2:1367127/1‑93 (MQ=255)
ttttATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAg > 1:3567186/1‑93 (MQ=255)
tttATGG‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGa < 1:1049739/93‑1 (MQ=255)
|
TGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA > NC_000913/4175855‑4176034
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA > NC_000913/4175856‑4176042
|
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG > SRR4302535.3017906/1‑94 (MQ=60)
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG > SRR4302535.1395038/1‑94 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG‑G < SRR4302535.3092610/94‑1 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG‑G > SRR4302535.1958409/1‑94 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG‑G < SRR4302535.3348829/94‑1 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG‑G < SRR4302535.1634981/94‑1 (MQ=60)
AAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GGgcc > SRR4302535.3827578/1‑91 (MQ=60)
AAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GGgcc < SRR4302535.4406487/94‑4 (MQ=60)
AGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTT < SRR4302535.3752392/94‑1 (MQ=60)
AGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTT < SRR4302535.4381757/94‑1 (MQ=60)
AGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTT > SRR4302535.3449856/1‑94 (MQ=60)
GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTG > SRR4302535.852509/1‑94 (MQ=60)
GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTG < SRR4302535.4068908/94‑1 (MQ=60)
CCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGC > SRR4302535.3900092/1‑94 (MQ=60)
CCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GGgtcttgc > SRR4302535.3418295/1‑87 (MQ=60)
CTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCC < SRR4302535.1862071/94‑1 (MQ=60)
CTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCC > SRR4302535.2159134/1‑94 (MQ=60)
TAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCC < SRR4302535.1711896/94‑1 (MQ=60)
AACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCG < SRR4302535.3582350/94‑1 (MQ=60)
ACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGT > SRR4302535.2801942/1‑94 (MQ=60)
ACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGT > SRR4302535.3039190/1‑94 (MQ=60)
CCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTA > SRR4302535.3533975/1‑94 (MQ=60)
CCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTA < SRR4302535.4090317/94‑1 (MQ=60)
CCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAA > SRR4302535.4200643/1‑94 (MQ=60)
CAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAA < SRR4302535.4700895/94‑1 (MQ=60)
CAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAA < SRR4302535.2623992/94‑1 (MQ=60)
AGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAA < SRR4302535.4423777/94‑1 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATCCAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACG < SRR4302535.1254875/94‑1 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACG > SRR4302535.2066393/1‑94 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACG > SRR4302535.383128/1‑94 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑ACTTGCCCGTAAAACG > SRR4302535.1531386/1‑94 (MQ=60)
GATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGA > SRR4302535.2402439/1‑94 (MQ=60)
ATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGAT < SRR4302535.2130051/94‑1 (MQ=60)
TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATT < SRR4302535.2077492/94‑1 (MQ=60)
TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATT < SRR4302535.4400944/94‑1 (MQ=60)
AAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTT < SRR4302535.620962/94‑1 (MQ=60)
AAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTT > SRR4302535.2580788/1‑94 (MQ=60)
AAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTT > SRR4302535.3210187/1‑94 (MQ=60)
AAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTT > SRR4302535.85413/1‑94 (MQ=60)
AAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTA > SRR4302535.4691513/1‑94 (MQ=60)
AAGCGGCGATTTAATCGTTGCACAACGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTAT < SRR4302535.4560504/94‑1 (MQ=60)
AGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATA < SRR4302535.1444150/94‑1 (MQ=60)
CGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATC < SRR4302535.43973/94‑1 (MQ=60)
GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCA < SRR4302535.3011322/94‑1 (MQ=60)
GCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCAC < SRR4302535.164374/94‑1 (MQ=60)
GCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCAC < SRR4302535.388885/94‑1 (MQ=60)
GCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCAC > SRR4302535.2420204/1‑94 (MQ=60)
CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACG < SRR4302535.549863/94‑1 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGG < SRR4302535.3017790/94‑1 (MQ=60)
ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGTCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGG < SRR4302535.708229/94‑1 (MQ=60)
ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGG > SRR4302535.432295/1‑94 (MQ=60)
ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGG < SRR4302535.4237152/94‑1 (MQ=60)
ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGG > SRR4302535.370537/1‑94 (MQ=60)
TTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGA < SRR4302535.414537/94‑1 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC > SRR4302535.607730/1‑94 (MQ=60)
TCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCT > SRR4302535.2506025/1‑94 (MQ=60)
CGTTGCACAAGGCGTCAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTC < SRR4302535.1111490/94‑1 (MQ=60)
GTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCT < SRR4302535.1065788/94‑1 (MQ=60)
GTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCT < SRR4302535.2129105/94‑1 (MQ=60)
GTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCT < SRR4302535.303457/94‑1 (MQ=60)
GCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAG < SRR4302535.673875/94‑1 (MQ=60)
CAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGG > SRR4302535.3024070/1‑94 (MQ=60)
AAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC > SRR4302535.2092617/1‑94 (MQ=60)
TGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATT < SRR4302535.1229851/94‑1 (MQ=60)
GAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTA > SRR4302535.359930/1‑94 (MQ=60)
AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAGACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC < SRR4302535.3326930/94‑1 (MQ=60)
AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC < SRR4302535.3009270/94‑1 (MQ=60)
AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC > SRR4302535.1139226/1‑94 (MQ=60)
GATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACC < SRR4302535.301879/94‑1 (MQ=60)
ATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCC > SRR4302535.2578637/1‑94 (MQ=60)
ATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCC > SRR4302535.1658649/1‑94 (MQ=60)
TTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCA < SRR4302535.1139479/94‑1 (MQ=60)
TGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA < SRR4302535.615002/94‑1 (MQ=60)
TGGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA < SRR4302535.2258938/94‑1 (MQ=60)
GGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAAC < SRR4302535.3738251/94‑1 (MQ=60)
GGAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAAC < SRR4302535.1570298/94‑1 (MQ=60)
GAATACAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT < SRR4302535.2314114/94‑1 (MQ=60)
CAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG > SRR4302535.4399350/1‑94 (MQ=60)
CAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG > SRR4302535.3187469/1‑94 (MQ=60)
CAATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG < SRR4302535.3506582/94‑1 (MQ=60)
AATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA < SRR4302535.2880308/94‑1 (MQ=60)
ATTTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAA > SRR4302535.2716089/1‑94 (MQ=60)
TTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCCCGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT < SRR4302535.3750008/94‑1 (MQ=60)
TTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT < SRR4302535.989649/94‑1 (MQ=60)
TTCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT > SRR4302535.2997959/1‑94 (MQ=60)
TCGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTT < SRR4302535.3101876/94‑1 (MQ=60)
CGCGCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTA > SRR4302535.1975408/1‑94 (MQ=60)
GCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAA < SRR4302535.3875429/94‑1 (MQ=60)
GCCTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAA < SRR4302535.2273930/94‑1 (MQ=60)
CTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG < SRR4302535.4228623/94‑1 (MQ=60)
CTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG > SRR4302535.2572879/1‑94 (MQ=60)
CTTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG < SRR4302535.4465094/94‑1 (MQ=60)
TTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG < SRR4302535.2717554/94‑1 (MQ=60)
TTTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG < SRR4302535.3468427/94‑1 (MQ=60)
TTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGC > SRR4302535.2787738/1‑94 (MQ=60)
TTTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGC < SRR4302535.529222/94‑1 (MQ=60)
TTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCT < SRR4302535.3372822/94‑1 (MQ=60)
TTGTTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCT < SRR4302535.228140/94‑1 (MQ=60)
TTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG < SRR4302535.3479878/94‑1 (MQ=60)
TTTTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG > SRR4302535.3591915/1‑94 (MQ=60)
TTTATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAA < SRR4302535.1057205/94‑1 (MQ=60)
TATGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAG > SRR4302535.1851061/1‑94 (MQ=60)
atgGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGT > SRR4302535.529338/4‑94 (MQ=60)
atgGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGT < SRR4302535.4378406/91‑1 (MQ=60)
atgGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGT > SRR4302535.3655477/4‑94 (MQ=60)
T‑GGTCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTA < SRR4302535.798746/94‑1 (MQ=60)
GG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA > SRR4302535.2402912/1‑94 (MQ=60)
GG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA > SRR4302535.2701584/1‑94 (MQ=60)
GG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA < SRR4302535.2271020/94‑1 (MQ=60)
G‑CCTTGCCCTTAAATCGATTTTTTATATCACGGGGAGCCTCTCAGAGTCGTTATTCCCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA < SRR4302535.4081921/94‑1 (MQ=60)
G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA < SRR4302535.2496485/94‑1 (MQ=60)
|
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA > NC_000913/4175856‑4176042
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
