Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,219,434	A→G	A211A (GCT→GCC)	arp ←	Arp

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,219,434	0	A	G	100.0%	830.7 / NA	259	A211A (GCT→GCC)	arp	Arp
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/138); total (121/138)

Only 100 of 281 total aligned reads displayed.

CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC  >  NC_000913/4219344‑4219523

caccaGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAggcggc                                                                                         <  1:535822/93‑1 (MQ=255)

caccaGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAggcggc                                                                                         >  1:87586/1‑93 (MQ=255)

 accaGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGgcggca                                                                                        >  1:3756594/1‑93 (MQ=255)

   caGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaac                                                                                      <  1:4055247/93‑1 (MQ=255)

   caGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaac                                                                                      <  2:2842707/93‑1 (MQ=255)

      tAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgca                                                                                   >  1:4388360/1‑93 (MQ=255)

       aaTAGGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaa                                                                                  <  1:2628607/93‑1 (MQ=255)

        atatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaac                                                                                 <  1:2365418/93‑1 (MQ=255)

        atatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaac                                                                                 >  1:3272938/1‑93 (MQ=255)

        atatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaac                                                                                 <  1:3068004/93‑1 (MQ=255)

        atatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaac                                                                                 <  2:484212/93‑1 (MQ=255)

         tatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGcaacgcaacg                                                                                <  2:3385765/93‑1 (MQ=255)

         tatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGcaacgcaacg                                                                                >  2:4107798/1‑93 (MQ=255)

         tatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGcaacgcaacg                                                                                >  1:3872849/1‑93 (MQ=255)

           tGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGcc                                                                              <  1:4322821/93‑1 (MQ=255)

              cTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCt                                                                           <  2:3060094/93‑1 (MQ=255)

                 ccATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAg                                                                        <  2:4046702/93‑1 (MQ=255)

                 ccATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAg                                                                        <  2:2131979/93‑1 (MQ=255)

                  cATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAgg                                                                       <  2:134664/93‑1 (MQ=255)

                   aTAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGa                                                                      <  2:2884658/93‑1 (MQ=255)

                      acacTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACgg                                                                   >  1:129856/1‑93 (MQ=255)

                        acTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCt                                                                 >  1:2754155/1‑93 (MQ=255)

                         cTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTg                                                                >  2:78673/1‑93 (MQ=255)

                              gCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAAc                                                           >  1:1610984/1‑93 (MQ=255)

                              gCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAAc                                                           >  2:2929968/1‑93 (MQ=255)

                               ccATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAAcc                                                          >  2:843164/1‑93 (MQ=255)

                                cATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCCCCGCAGGCGGCAACGCACGGCCCCTCAGGACGGCTGGAAACCa                                                         >  2:4364491/1‑93 (MQ=255)

                                cATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCa                                                         >  2:2632275/1‑93 (MQ=255)

                                 aTTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCCACGCCCCTCAGGACGGCTGGAAACCaa                                                        >  2:2234231/1‑93 (MQ=255)

                                 aTTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGGAACCaa                                                        >  2:945589/1‑93 (MQ=255)

                                  tttGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAc                                                       >  2:1493792/1‑93 (MQ=255)

                                  tttGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAc                                                       >  1:2245425/1‑93 (MQ=255)

                                  tttGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAc                                                       >  2:362206/1‑93 (MQ=255)

                                  tttGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAc                                                       <  1:1465486/93‑1 (MQ=255)

                                    tGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGc                                                     >  2:153228/1‑93 (MQ=255)

                                     gATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGcc                                                    <  1:3624403/93‑1 (MQ=255)

                                      aTTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCa                                                   <  1:1808246/93‑1 (MQ=255)

                                       ttCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaa                                                  <  2:1259039/93‑1 (MQ=255)

                                       ttCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaa                                                  <  2:4498556/93‑1 (MQ=255)

                                        tCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaaa                                                 <  2:517045/93‑1 (MQ=255)

                                        tCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaaa                                                 <  1:4625352/93‑1 (MQ=255)

                                          cATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGt                                               <  1:2994860/93‑1 (MQ=255)

                                          cATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGt                                               >  1:4041457/1‑93 (MQ=255)

                                          cATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGt                                               >  2:3997038/1‑93 (MQ=255)

                                           aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTc                                              <  2:156371/93‑1 (MQ=255)

                                           aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTc                                              <  1:4160108/93‑1 (MQ=255)

                                            tCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCt                                             <  2:1239018/93‑1 (MQ=255)

                                            tCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCt                                             <  1:2006859/93‑1 (MQ=255)

                                              ttGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTgg                                           <  2:3968429/93‑1 (MQ=255)

                                               tGTCAAAATATGCTTTCATAACTAGCCCGAAATCCCCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGGCTGGt                                          <  2:3482189/93‑1 (MQ=255)

                                               tGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGt                                          <  1:2558103/93‑1 (MQ=255)

                                                 tCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttt                                        <  2:1877274/93‑1 (MQ=255)

                                                 tCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttt                                        >  2:4377181/1‑93 (MQ=255)

                                                 tCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttt                                        <  1:3694672/93‑1 (MQ=255)

                                                 tCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttt                                        <  1:2341441/93‑1 (MQ=255)

                                                  cAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGtttt                                       <  1:901809/93‑1 (MQ=255)

                                                   aaaaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttttt                                      <  1:843872/93‑1 (MQ=255)

                                                   aaaaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttttt                                      >  2:638184/1‑93 (MQ=255)

                                                    aaaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTg                                     >  2:1507572/1‑93 (MQ=255)

                                                     aaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGc                                    <  2:318999/93‑1 (MQ=255)

                                                     aaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGc                                    <  2:175926/93‑1 (MQ=255)

                                                      atatGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCa                                   >  1:4275305/1‑93 (MQ=255)

                                                      atatGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCa                                   <  1:2870868/93‑1 (MQ=255)

                                                       tatGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAt                                  >  1:3915210/1‑93 (MQ=255)

                                                       tatGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAt                                  >  1:712103/1‑93 (MQ=255)

                                                       tatGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAt                                  >  1:2901780/1‑93 (MQ=255)

                                                         tGCTTTCATAACTAGCCCGCAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAttt                                <  2:2005428/93‑1 (MQ=255)

                                                          gCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAtttt                               >  1:1851397/1‑93 (MQ=255)

                                                           cTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGCCGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAttttt                              <  2:3827266/93‑1 (MQ=255)

                                                           cTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAttttt                              <  1:2501274/93‑1 (MQ=255)

                                                           cTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAttttt                              <  2:3126256/93‑1 (MQ=255)

                                                           cTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAttttt                              <  1:2094722/93‑1 (MQ=255)

                                                            tttCATAACTAGCCGGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAtttttt                             <  2:2463345/93‑1 (MQ=255)

                                                            tttCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAtttttt                             >  1:2690389/1‑93 (MQ=255)

                                                            tttCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAtttttt                             >  1:4469556/1‑93 (MQ=255)

                                                              tCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTttgt                           >  1:3956884/1‑93 (MQ=255)

                                                               cATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTttgtt                          >  2:1822022/1‑93 (MQ=255)

                                                               cATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTttgtt                          <  1:3597212/93‑1 (MQ=255)

                                                                aTAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTttgttg                         >  2:1132626/1‑93 (MQ=255)

                                                                 tAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGa                        <  2:2808315/93‑1 (MQ=255)

                                                                 tAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGa                        >  2:3780524/1‑93 (MQ=255)

                                                                  aaCTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGaa                       <  2:1921946/93‑1 (MQ=255)

                                                                   aCTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAg                      <  1:3434489/93‑1 (MQ=255)

                                                                    ttAGCCCGAAATCCCCGCAGCGGGCACCGCAACGCCCCCCAGAACGGCTGGAAACCAACGCCAAAGCCTGGTTTTTGCATTTTTTGTTGAAgg                     >  2:3679034/2‑92 (MQ=255)

                                                                     tAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTg                    >  2:3883324/1‑93 (MQ=255)

                                                                      aGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGc                   <  2:2348503/93‑1 (MQ=255)

                                                                       gCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCg                  >  2:4390887/1‑93 (MQ=255)

                                                                         ccGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTg                <  1:1380176/93‑1 (MQ=255)

                                                                         ccGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTg                >  1:2744708/1‑93 (MQ=255)

                                                                         ccGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGCTTTTGCATTTTTTGTTGAAGTGCGTg                >  1:2457274/1‑93 (MQ=255)

                                                                            aaaTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTgaga             <  2:4183025/93‑1 (MQ=255)

                                                                            aaaTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTgaga             <  1:784583/93‑1 (MQ=255)

                                                                            aaaTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTgaga             >  1:412898/1‑93 (MQ=255)

                                                                              aTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGaaa           >  2:3413417/1‑93 (MQ=255)

                                                                              aTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGaaa           <  2:1053506/93‑1 (MQ=255)

                                                                              aTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGaaa           >  2:4646631/1‑93 (MQ=255)

                                                                               tCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAAt          <  1:4684721/93‑1 (MQ=255)

                                                                                cACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAAtt         <  1:1102540/93‑1 (MQ=255)

                                                                                      aggcggCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAg   >  1:792366/1‑93 (MQ=255)

                                                                                       ggcggcAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGc  >  1:3192304/1‑93 (MQ=255)

CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC  >  NC_000913/4219344‑4219523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCT  >  NC_000913/4219341‑4219524

ATCCACCAGTAATATGGCTGCCATAACACCGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCG                                                                                            <  SRR4302535.271734/94‑1 (MQ=60)

 TCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGG                                                                                           <  SRR4302535.1937795/94‑1 (MQ=60)

  CCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGC                                                                                          >  SRR4302535.88201/1‑94 (MQ=60)

   CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA                                                                                         <  SRR4302535.539564/94‑1 (MQ=60)

   CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA                                                                                         >  SRR4302535.3782575/1‑94 (MQ=60)

   CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA                                                                                         >  SRR4302535.85270/1‑94 (MQ=60)

      CAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACG                                                                                      <  SRR4302535.4083012/94‑1 (MQ=60)

      CAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACG                                                                                      >  SRR4302535.2220310/1‑94 (MQ=60)

      CAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACG                                                                                      <  SRR4302535.2770887/94‑1 (MQ=60)

       AGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGC                                                                                     <  SRR4302535.2281102/94‑1 (MQ=60)

        GTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCA                                                                                    >  SRR4302535.4418379/1‑94 (MQ=60)

          AATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAAG                                                                                  >  SRR4302535.2604213/1‑94 (MQ=60)

          AATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAAC                                                                                  >  SRR4302535.3295672/1‑94 (MQ=60)

          AATAGGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAAC                                                                                  <  SRR4302535.2647442/94‑1 (MQ=60)

           ATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACG                                                                                 >  SRR4302535.3899462/1‑94 (MQ=60)

           ATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACG                                                                                 <  SRR4302535.1550406/94‑1 (MQ=60)

           ATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACG                                                                                 <  SRR4302535.2382399/94‑1 (MQ=60)

           ATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACG                                                                                 <  SRR4302535.3089437/94‑1 (MQ=60)

             ATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCC                                                                               <  SRR4302535.4570506/94‑1 (MQ=60)

              TGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCC                                                                              <  SRR4302535.4015426/94‑1 (MQ=60)

              TGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCC                                                                              <  SRR4302535.4352394/94‑1 (MQ=60)

              TGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCC                                                                              <  SRR4302535.2044529/94‑1 (MQ=60)

              TGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCC                                                                              <  SRR4302535.2499055/94‑1 (MQ=60)

               GGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCC                                                                             >  SRR4302535.995581/1‑94 (MQ=60)

                GCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGCAATCACCGCAGGCGGCAACGCAACGCCCCT                                                                            >  SRR4302535.2739891/1‑94 (MQ=60)

                GCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCT                                                                            <  SRR4302535.2952765/94‑1 (MQ=60)

                GCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCT                                                                            >  SRR4302535.846910/1‑94 (MQ=60)

                GCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCC                                                                            >  SRR4302535.797509/1‑94 (MQ=60)

                   GCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAG                                                                         >  SRR4302535.4427204/1‑94 (MQ=60)

                   GCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAG                                                                         <  SRR4302535.4392577/94‑1 (MQ=60)

                      ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC                                                                      >  SRR4302535.3721447/1‑94 (MQ=60)

                      ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC                                                                      <  SRR4302535.2855341/94‑1 (MQ=60)

                       TAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACG                                                                     <  SRR4302535.3711273/94‑1 (MQ=60)

                        AACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGG                                                                    >  SRR4302535.130770/1‑94 (MQ=60)

                          CACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCT                                                                  >  SRR4302535.2773786/1‑94 (MQ=60)

                           ACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTG                                                                 >  SRR4302535.2120854/1‑94 (MQ=60)

                            CTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGG                                                                >  SRR4302535.1821321/1‑94 (MQ=60)

                            CTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGG                                                                >  SRR4302535.431528/1‑94 (MQ=60)

                               ATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAA                                                             <  SRR4302535.2337318/94‑1 (MQ=60)

                                TGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAAC                                                            >  SRR4302535.1622598/1‑94 (MQ=60)

                                 GCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATGACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACC                                                           >  SRR4302535.2704271/1‑94 (MQ=60)

                                 GCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACC                                                           <  SRR4302535.3945192/94‑1 (MQ=60)

                                  CCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCA                                                          >  SRR4302535.768293/1‑94 (MQ=60)

                                  CCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCA                                                          >  SRR4302535.4184916/1‑94 (MQ=60)

                                    ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAC                                                        <  SRR4302535.4696650/94‑1 (MQ=60)

                                    ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAC                                                        >  SRR4302535.1375327/1‑94 (MQ=60)

                                    ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAC                                                        >  SRR4302535.2261392/1‑94 (MQ=60)

                                     TTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACG                                                       <  SRR4302535.3708601/94‑1 (MQ=60)

                                     TTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACG                                                       <  SRR4302535.1475986/94‑1 (MQ=60)

                                     TTTGATTCCATCTTGTCAAAAGATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACG                                                       <  SRR4302535.797464/94‑1 (MQ=60)

                                        GATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCA                                                    <  SRR4302535.3649526/94‑1 (MQ=60)

                                        GATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCA                                                    >  SRR4302535.4142258/1‑94 (MQ=60)

                                        GATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCA                                                    >  SRR4302535.2542057/1‑94 (MQ=60)

                                         ATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAA                                                   <  SRR4302535.1821334/94‑1 (MQ=60)

                                         ATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAA                                                   >  SRR4302535.794137/1‑94 (MQ=60)

                                         ATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAA                                                   >  SRR4302535.1594015/1‑94 (MQ=60)

                                          TTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAA                                                  >  SRR4302535.3276217/1‑94 (MQ=60)

                                           TCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAG                                                 <  SRR4302535.4656757/94‑1 (MQ=60)

                                            CCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGT                                                >  SRR4302535.2828505/1‑94 (MQ=60)

                                            CCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGT                                                >  SRR4302535.4069127/1‑94 (MQ=60)

                                            CCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGT                                                <  SRR4302535.3204459/94‑1 (MQ=60)

                                             CATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTC                                               >  SRR4302535.3223869/1‑94 (MQ=60)

                                             CATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTC                                               <  SRR4302535.3015856/94‑1 (MQ=60)

                                              ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT                                              >  SRR4302535.2754089/1‑94 (MQ=60)

                                              ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT                                              >  SRR4302535.2393269/1‑94 (MQ=60)

                                              ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT                                              <  SRR4302535.4188580/94‑1 (MQ=60)

                                               TCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCGACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTG                                             <  SRR4302535.3763891/94‑1 (MQ=60)

                                               TCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTG                                             <  SRR4302535.834106/94‑1 (MQ=60)

                                               TCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTG                                             >  SRR4302535.942507/1‑94 (MQ=60)

                                               TCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTG                                             <  SRR4302535.2021316/94‑1 (MQ=60)

                                                CTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGG                                            >  SRR4302535.2650/1‑94 (MQ=60)

                                                CTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGG                                            <  SRR4302535.4529608/94‑1 (MQ=60)

                                                 TTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGACACCAACGCCAAAGTCTGGT                                           >  SRR4302535.3126308/1‑94 (MQ=60)

                                                 TTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGT                                           <  SRR4302535.1176448/94‑1 (MQ=60)

                                                  TGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTT                                          <  SRR4302535.1462588/94‑1 (MQ=60)

                                                  TGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTT                                          <  SRR4302535.2576519/94‑1 (MQ=60)

                                                  TGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTT                                          <  SRR4302535.3914926/94‑1 (MQ=60)

                                                  TGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTT                                          >  SRR4302535.3014737/1‑94 (MQ=60)

                                                   GTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTT                                         <  SRR4302535.4069875/94‑1 (MQ=60)

                                                   GTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTT                                         >  SRR4302535.3820062/1‑94 (MQ=60)

                                                   GTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGGCTGGTTT                                         >  SRR4302535.2048043/1‑94 (MQ=60)

                                                    TCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTT                                        <  SRR4302535.2358194/94‑1 (MQ=60)

                                                    TCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTT                                        <  SRR4302535.3720246/94‑1 (MQ=60)

                                                     CAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTT                                       <  SRR4302535.4116494/94‑1 (MQ=60)

                                                     CAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTT                                       <  SRR4302535.908195/94‑1 (MQ=60)

                                                     CAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTT                                       <  SRR4302535.306638/94‑1 (MQ=60)

                                                      AAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTG                                      <  SRR4302535.849801/94‑1 (MQ=60)

                                                      AAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTG                                      <  SRR4302535.2361726/94‑1 (MQ=60)

                                                      AAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTG                                      <  SRR4302535.4070036/94‑1 (MQ=60)

                                                      AAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTG                                      <  SRR4302535.1935785/94‑1 (MQ=60)

                                                       AAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGTTTTTTGC                                     >  SRR4302535.4662297/1‑94 (MQ=60)

                                                        AATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCA                                    >  SRR4302535.4304570/1‑94 (MQ=60)

                                                         ATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAT                                   >  SRR4302535.2922292/1‑94 (MQ=60)

                                                         ATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAT                                   >  SRR4302535.3902085/1‑94 (MQ=60)

                                                         ATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAT                                   >  SRR4302535.3942000/1‑94 (MQ=60)

                                                         ATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAT                                   >  SRR4302535.717102/1‑94 (MQ=60)

                                                         ATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAT                                   <  SRR4302535.2891208/94‑1 (MQ=60)

                                                         ATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAAGGCTGGGAAACAACGCCACAGTCTGGTTTTTGCAT                                   >  SRR4302535.1956372/1‑94 (MQ=60)

                                                          TATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATT                                  <  SRR4302535.644009/94‑1 (MQ=60)

                                                           ATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTT                                 <  SRR4302535.3368209/94‑1 (MQ=60)

                                                            TGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTT                                >  SRR4302535.1864736/1‑94 (MQ=60)

                                                             GCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTT                               >  SRR4302535.670364/1‑94 (MQ=60)

                                                              CTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTT                              >  SRR4302535.2709619/1‑94 (MQ=60)

                                                              CTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTT                              <  SRR4302535.2109826/94‑1 (MQ=60)

                                                              CTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTT                              <  SRR4302535.2519313/94‑1 (MQ=60)

                                                              CTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTT                              >  SRR4302535.4500224/1‑94 (MQ=60)

                                                               TTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAACGTCTGGTTTTTGCATTTTTTG                             >  SRR4302535.4186664/1‑94 (MQ=60)

                                                                TTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGTCGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGT                            <  SRR4302535.2535796/94‑1 (MQ=60)

                                                                TTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGT                            >  SRR4302535.3983899/1‑94 (MQ=60)

                                                                TTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGT                            >  SRR4302535.3637478/1‑94 (MQ=60)

                                                                 TCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTT                           <  SRR4302535.4489869/94‑1 (MQ=60)

                                                                  CATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTG                          <  SRR4302535.2404503/94‑1 (MQ=60)

                                                                  CATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTG                          <  SRR4302535.3622176/94‑1 (MQ=60)

                                                                    TAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAA                        <  SRR4302535.901712/94‑1 (MQ=60)

                                                                      ACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGT                      <  SRR4302535.3458359/94‑1 (MQ=60)

                                                                      ACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACAAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGT                      >  SRR4302535.2768371/1‑94 (MQ=60)

                                                                       CTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTG                     <  SRR4302535.1828980/94‑1 (MQ=60)

                                                                         AGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCG                   >  SRR4302535.2519306/1‑94 (MQ=60)

                                                                         AGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCG                   <  SRR4302535.4315365/94‑1 (MQ=60)

                                                                         AGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCG                   <  SRR4302535.1726198/94‑1 (MQ=60)

                                                                          GCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGT                  <  SRR4302535.1361342/94‑1 (MQ=60)

                                                                           CCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTG                 <  SRR4302535.3418975/94‑1 (MQ=60)

                                                                           CCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTG                 >  SRR4302535.2764272/1‑94 (MQ=60)

                                                                           CCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGCTTTTGCATTTTTTGTTGAAGTGCGTG                 >  SRR4302535.2474997/1‑94 (MQ=60)

                                                                            CCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGA                <  SRR4302535.1390019/94‑1 (MQ=60)

                                                                             CGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAG               >  SRR4302535.4400920/1‑94 (MQ=60)

                                                                              GAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGA              >  SRR4302535.415799/1‑94 (MQ=60)

                                                                              GAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGA              >  SRR4302535.1434418/1‑94 (MQ=60)

                                                                               AAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAA             <  SRR4302535.772962/94‑1 (MQ=60)

                                                                               AAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAA             <  SRR4302535.790088/94‑1 (MQ=60)

                                                                               AAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAA             >  SRR4302535.2908216/1‑94 (MQ=60)

                                                                               AAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAA             >  SRR4302535.3547703/1‑94 (MQ=60)

                                                                                 ATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAAT           <  SRR4302535.497462/94‑1 (MQ=60)

                                                                                 ATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAAT           >  SRR4302535.4003389/1‑94 (MQ=60)

                                                                                  TCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATT          <  SRR4302535.4716421/94‑1 (MQ=60)

                                                                                   CACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTT         <  SRR4302535.1110415/94‑1 (MQ=60)

                                                                                    ACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTT        <  SRR4302535.3621327/94‑1 (MQ=60)

                                                                                      CGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTC      >  SRR4302535.890644/1‑94 (MQ=60)

                                                                                        CAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAG    >  SRR4302535.797935/1‑94 (MQ=60)

                                                                                         AGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC   >  SRR4302535.2918131/1‑94 (MQ=60)

                                                                                         AGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC   <  SRR4302535.3819448/94‑1 (MQ=60)

                                                                                         AGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC   >  SRR4302535.3214388/1‑94 (MQ=60)

                                                                                          GGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCT  >  SRR4302535.1703908/1‑94 (MQ=60)

                                                                                          GGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCT  <  SRR4302535.4209253/94‑1 (MQ=60)

ATCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCT  >  NC_000913/4219341‑4219524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`