Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,366,832	T→C	M387V (ATG→GTG)	yjeH ←	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,366,832	0	T	C	100.0%	509.8 / NA	162	M387V (ATG→GTG)	yjeH	putative transport
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (100/62); total (100/62)

Only 100 of 166 total aligned reads displayed.

TTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATA  >  NC_000913/4366742‑4366921

 tATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGc                                                                                        <  2:285304/93‑1 (MQ=255)

  aTGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGCCTTTTCCAGCCGACCACTGcc                                                                                       >  1:4089506/1‑93 (MQ=255)

  aTGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGcc                                                                                       >  1:3181043/1‑93 (MQ=255)

  aTGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGcc                                                                                       >  1:1581286/1‑93 (MQ=255)

   tGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCa                                                                                      <  2:2763846/93‑1 (MQ=255)

   tGCCATTTTCCGGCGTTTTTCGATTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCa                                                                                      >  1:1259774/1‑93 (MQ=255)

    gCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAg                                                                                     <  2:3819077/93‑1 (MQ=255)

    gCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAg                                                                                     >  2:3166135/1‑93 (MQ=255)

    gCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAg                                                                                     >  2:1705819/1‑93 (MQ=255)

       aTTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTaa                                                                                  >  1:980410/1‑93 (MQ=255)

        ttttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAc                                                                                 >  1:1702010/1‑93 (MQ=255)

         tttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACa                                                                                <  2:643519/93‑1 (MQ=255)

            ccGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGaa                                                                             >  2:4533422/1‑93 (MQ=255)

             cGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAAc                                                                            >  2:3567032/1‑93 (MQ=255)

               gCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGc                                                                          <  2:147795/93‑1 (MQ=255)

               gCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGc                                                                          >  2:3462521/1‑93 (MQ=255)

               gCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGc                                                                          >  1:3050854/1‑93 (MQ=255)

                 gTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTCACAGAACGCAt                                                                        >  2:783321/1‑93 (MQ=255)

                 gTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAt                                                                        >  1:677735/1‑93 (MQ=255)

                   ttttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGACGACCACTGCCAGTAACAGAACGCATaa                                                                      >  2:3437823/1‑93 (MQ=255)

                    tttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAc                                                                     >  2:3719568/1‑93 (MQ=255)

                    tttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAc                                                                     <  1:2196793/93‑1 (MQ=255)

                    tttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAc                                                                     >  1:3800127/1‑93 (MQ=255)

                        gTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGcc                                                                 <  2:1627399/93‑1 (MQ=255)

                         ttttGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGccc                                                                >  1:2407573/1‑93 (MQ=255)

                         ttttGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGccc                                                                >  2:3243920/1‑93 (MQ=255)

                                agcaACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAacc                                                         <  1:258695/93‑1 (MQ=255)

                                agcaACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAacc                                                         >  2:3427601/1‑93 (MQ=255)

                                agcaACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAacc                                                         >  1:3448053/1‑93 (MQ=255)

                                 acaACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAacca                                                        <  2:2616750/92‑1 (MQ=255)

                                    aCAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCg                                                     >  2:4182160/1‑93 (MQ=255)

                                    aCAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCg                                                     >  2:281999/1‑93 (MQ=255)

                                      aGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGcc                                                   >  1:2383356/1‑93 (MQ=255)

                                       gCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  <  1:3373978/93‑1 (MQ=255)

                                       gCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  <  2:3781796/93‑1 (MQ=255)

                                       gCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACTACCGCCa                                                  >  1:1793548/1‑93 (MQ=255)

                                       gCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  <  1:2844540/93‑1 (MQ=255)

                                       gCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  >  1:1436692/1‑93 (MQ=255)

                                         cATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagt                                                >  2:389699/1‑93 (MQ=255)

                                         cATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagt                                                >  1:4588155/1‑93 (MQ=255)

                                          aTAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagta                                               >  1:2036620/1‑93 (MQ=255)

                                           tAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagtag                                              >  1:22373/1‑93 (MQ=255)

                                             aCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTc                                            <  1:205011/93‑1 (MQ=255)

                                             aCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTc                                            >  2:1895262/1‑93 (MQ=255)

                                                ccGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAt                                         <  1:2176855/93‑1 (MQ=255)

                                                 cGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATa                                        <  2:3159903/93‑1 (MQ=255)

                                                 cGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATa                                        <  1:633771/93‑1 (MQ=255)

                                                  gCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCACGCCAACCACCGCCAGTAGTCGATaa                                       >  1:1212583/1‑93 (MQ=255)

                                                   ccAGCATGCTCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAc                                      <  2:690334/93‑1 (MQ=255)

                                                   ccAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAc                                      <  1:181706/93‑1 (MQ=255)

                                                   ccAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAc                                      <  1:3980541/93‑1 (MQ=255)

                                                    cAGCATGATCAGCGCATAGAGACTTTCCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACg                                     <  1:13501/93‑1 (MQ=255)

                                                     aGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGt                                    >  1:871397/1‑93 (MQ=255)

                                                      gCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTc                                   <  1:640336/93‑1 (MQ=255)

                                                      gCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTc                                   >  2:1731599/1‑93 (MQ=255)

                                                        aTGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCt                                 >  1:1953783/1‑93 (MQ=255)

                                                        aTGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCt                                 <  1:4045969/93‑1 (MQ=255)

                                                        aTGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCt                                 >  2:197895/1‑93 (MQ=255)

                                                         tGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCtt                                >  1:1044154/1‑93 (MQ=255)

                                                         tGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCtt                                <  1:935523/93‑1 (MQ=255)

                                                          gATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTg                               <  1:3626060/93‑1 (MQ=255)

                                                                  cATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAAtt                       >  1:4264839/1‑93 (MQ=255)

                                                                  cATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAAtt                       <  2:1544545/93‑1 (MQ=255)

                                                                  cATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAAtt                       >  2:2754741/1‑93 (MQ=255)

                                                                    tAGAGACTTTTGCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTa                     <  1:3117752/93‑1 (MQ=255)

                                                                    tAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTa                     >  1:2063226/1‑93 (MQ=255)

                                                                    tAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTa                     >  2:4022495/1‑93 (MQ=255)

                                                                    tAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTa                     >  2:1060193/1‑93 (MQ=255)

                                                                    tAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTa                     >  1:3936640/1‑93 (MQ=255)

                                                                     agagACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAc                    <  2:2270424/93‑1 (MQ=255)

                                                                      gagaCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACa                   >  2:1279194/1‑93 (MQ=255)

                                                                      gagaCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACa                   <  2:2052995/93‑1 (MQ=255)

                                                                       agaCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAg                  >  2:2119127/1‑93 (MQ=255)

                                                                       agaCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAg                  <  1:250665/93‑1 (MQ=255)

                                                                        gaCTTTTCAAGCCGACCACCGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGc                 >  2:4586359/1‑93 (MQ=255)

                                                                        gaCTTTCCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGc                 <  2:2500475/93‑1 (MQ=255)

                                                                         aCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGcc                <  2:221494/93‑1 (MQ=255)

                                                                         aCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGcc                >  2:3169412/1‑93 (MQ=255)

                                                                          cTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCt               >  2:2491976/1‑93 (MQ=255)

                                                                          cTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCt               >  1:2876557/1‑93 (MQ=255)

                                                                           ttttCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTg              >  1:4121372/1‑93 (MQ=255)

                                                                           ttttCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTg              <  2:334412/93‑1 (MQ=255)

                                                                            tttCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGc             <  1:4311004/93‑1 (MQ=255)

                                                                            ttcccAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGc             <  2:1102829/90‑1 (MQ=255)

                                                                             tgccAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGcc            <  1:2562353/91‑1 (MQ=255)

                                                                               ccAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAg          <  2:4248981/93‑1 (MQ=255)

                                                                                cAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgc         >  1:3564364/1‑93 (MQ=255)

                                                                                 aGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgca        <  2:2990191/93‑1 (MQ=255)

                                                                                 aGCCGACCACTGCAAGTAACAGAACGCAAAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgca        <  2:1402113/93‑1 (MQ=255)

                                                                                  gCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcat       >  2:4072662/1‑93 (MQ=255)

                                                                                  gCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcat       <  1:3296804/93‑1 (MQ=255)

                                                                                   ccGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatg      >  2:477819/1‑93 (MQ=255)

                                                                                    cGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgc     >  2:1336835/1‑93 (MQ=255)

                                                                                    cGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgc     <  1:3368624/93‑1 (MQ=255)

                                                                                     gACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgca    >  2:3446639/1‑93 (MQ=255)

                                                                                     gACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgca    <  1:1600455/93‑1 (MQ=255)

                                                                                     gACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgca    >  1:2302484/1‑93 (MQ=255)

                                                                                     gACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgca    >  1:433731/1‑93 (MQ=255)

                                                                                       ccACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATa  <  2:3855472/93‑1 (MQ=255)

                                                                                       ccACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATa  <  2:2215502/93‑1 (MQ=255)

TTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATA  >  NC_000913/4366742‑4366921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  >  NC_000913/4366739‑4366925

TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               >  SRR4302535.3943003/1‑94 (MQ=60)

TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               <  SRR4302535.4612472/94‑1 (MQ=60)

 GGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              <  SRR4302535.3054793/94‑1 (MQ=60)

 GGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              <  SRR4302535.3761287/94‑1 (MQ=60)

  GTTATGCCTTTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTG                                                                                             <  SRR4302535.4224875/94‑1 (MQ=60)

   TTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGC                                                                                            <  SRR4302535.2418039/94‑1 (MQ=60)

    TATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGCCTTTTCCAGCCGACCACTGCC                                                                                           >  SRR4302535.4117486/1‑94 (MQ=60)

    TATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCC                                                                                           >  SRR4302535.3203031/1‑94 (MQ=60)

    TATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCC                                                                                           >  SRR4302535.1592700/1‑94 (MQ=60)

     ATGCCATTTTCCGGCGTTTTTCGATTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCA                                                                                          >  SRR4302535.1268790/1‑94 (MQ=60)

         CATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAA                                                                                      >  SRR4302535.987378/1‑94 (MQ=60)

          ATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAC                                                                                     >  SRR4302535.1714314/1‑94 (MQ=60)

          ATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAC                                                                                     >  SRR4302535.409766/1‑94 (MQ=60)

               CCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAAC                                                                                >  SRR4302535.1674721/1‑94 (MQ=60)

                 GGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGC                                                                              >  SRR4302535.3072226/1‑94 (MQ=60)

                   CGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAT                                                                            <  SRR4302535.2036488/94‑1 (MQ=60)

                   CGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAT                                                                            >  SRR4302535.682471/1‑94 (MQ=60)

                      TTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAC                                                                         >  SRR4302535.3826322/1‑94 (MQ=60)

                       TTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACA                                                                        <  SRR4302535.2586782/94‑1 (MQ=60)

                       TTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACA                                                                        <  SRR4302535.2212450/94‑1 (MQ=60)

                          CGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCC                                                                     >  SRR4302535.96961/1‑94 (MQ=60)

                          CGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCC                                                                     >  SRR4302535.228510/1‑94 (MQ=60)

                           GTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCC                                                                    >  SRR4302535.2424902/1‑94 (MQ=60)

                           GTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCC                                                                    >  SRR4302535.378862/1‑94 (MQ=60)

                                  CAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACC                                                             >  SRR4302535.3472024/1‑94 (MQ=60)

                                   AGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCA                                                            <  SRR4302535.260485/94‑1 (MQ=60)

                                      AACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCG                                                         >  SRR4302535.2814265/1‑94 (MQ=60)

                                        CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCC                                                       >  SRR4302535.2400472/1‑94 (MQ=60)

                                        CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCC                                                       <  SRR4302535.3285156/94‑1 (MQ=60)

                                         AGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACTACCGCCA                                                      >  SRR4302535.1806515/1‑94 (MQ=60)

                                         AGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCA                                                      >  SRR4302535.1446958/1‑94 (MQ=60)

                                          GCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302535.3397444/94‑1 (MQ=60)

                                          GCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302535.2448327/94‑1 (MQ=60)

                                          GCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302535.2864707/94‑1 (MQ=60)

                                           CCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGT                                                    >  SRR4302535.4619395/1‑94 (MQ=60)

                                           CCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGT                                                    >  SRR4302535.2166479/1‑94 (MQ=60)

                                            CATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTA                                                   >  SRR4302535.2051287/1‑94 (MQ=60)

                                            CATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTA                                                   >  SRR4302535.4438325/1‑94 (MQ=60)

                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302535.22541/1‑94 (MQ=60)

                                                ACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCG                                               <  SRR4302535.206418/94‑1 (MQ=60)

                                                ACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCG                                               >  SRR4302535.4279136/1‑94 (MQ=60)

                                                 CCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACGGCCAGAAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGA                                              <  SRR4302535.2905538/94‑1 (MQ=60)

                                                   CCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATA                                            <  SRR4302535.2192411/94‑1 (MQ=60)

                                                    CGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTATCAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAA                                           <  SRR4302535.3322815/94‑1 (MQ=60)

                                                    CGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAA                                           <  SRR4302535.638189/94‑1 (MQ=60)

                                                    CGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCACGCCAACCACCGCCAGTAGTCGATAA                                           >  SRR4302535.1221282/1‑94 (MQ=60)

                                                     GCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          <  SRR4302535.709763/94‑1 (MQ=60)

                                                      CCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACG                                         <  SRR4302535.182965/94‑1 (MQ=60)

                                                      CCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACG                                         <  SRR4302535.4007735/94‑1 (MQ=60)

                                                       CAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGT                                        >  SRR4302535.877573/1‑94 (MQ=60)

                                                       CAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGT                                        >  SRR4302535.1529799/1‑94 (MQ=60)

                                                       CAGCATGATCAGCGCATAGAGACTTTCCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGT                                        <  SRR4302535.13601/94‑1 (MQ=60)

                                                        AGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTC                                       <  SRR4302535.475037/94‑1 (MQ=60)

                                                        AGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTC                                       >  SRR4302535.1902159/1‑94 (MQ=60)

                                                         GCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCC                                      <  SRR4302535.644811/94‑1 (MQ=60)

                                                          CATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCT                                     >  SRR4302535.1967845/1‑94 (MQ=60)

                                                           ATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTT                                    <  SRR4302535.4073665/94‑1 (MQ=60)

                                                           ATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTT                                    >  SRR4302535.1051554/1‑94 (MQ=60)

                                                            TGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTG                                   <  SRR4302535.942147/94‑1 (MQ=60)

                                                            TGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCACCAACCACCGCCAGTAGTCGATAACGTCCTTG                                   >  SRR4302535.4331672/1‑94 (MQ=60)

                                                             GATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGC                                  <  SRR4302535.3651189/94‑1 (MQ=60)

                                                                   CGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGACCGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAAT                            <  SRR4302535.2906410/94‑1 (MQ=60)

                                                                    GCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATT                           >  SRR4302535.4294045/1‑94 (MQ=60)

                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          <  SRR4302535.1243117/94‑1 (MQ=60)

                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCAACGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          >  SRR4302535.2212555/1‑94 (MQ=60)

                                                                      ATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA                         >  SRR4302535.2078099/1‑94 (MQ=60)

                                                                      ATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA                         >  SRR4302535.3963492/1‑94 (MQ=60)

                                                                       TAGAGACTTTTGCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAC                        <  SRR4302535.3139456/94‑1 (MQ=60)

                                                                          AGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGC                     <  SRR4302535.252391/94‑1 (MQ=60)

                                                                           GACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCC                    >  SRR4302535.1424371/1‑94 (MQ=60)

                                                                            ACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCT                   <  SRR4302535.3089222/94‑1 (MQ=60)

                                                                            ACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCT                   >  SRR4302535.2896931/1‑94 (MQ=60)

                                                                             CTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTG                  >  SRR4302535.4149575/1‑94 (MQ=60)

                                                                             CTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTG                  >  SRR4302535.680063/1‑94 (MQ=60)

                                                                             CTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTC                  >  SRR4302535.3887329/1‑94 (MQ=60)

                                                                               TTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCC                <  SRR4302535.1744971/94‑1 (MQ=60)

                                                                               TTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCC                <  SRR4302535.4340494/94‑1 (MQ=60)

                                                                                TTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCA               <  SRR4302535.3463358/94‑1 (MQ=60)

                                                                                TGCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCA               <  SRR4302535.2580797/94‑1 (MQ=60)

                                                                                  CCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGC             >  SRR4302535.3589077/1‑94 (MQ=60)

                                                                                    AGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCAT           >  SRR4302535.3558157/1‑94 (MQ=60)

                                                                                    AGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCAT           >  SRR4302535.4068510/1‑94 (MQ=60)

                                                                                     GCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATG          <  SRR4302535.3319724/94‑1 (MQ=60)

                                                                                       CGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCA        <  SRR4302535.3392063/94‑1 (MQ=60)

                                                                                       CGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCA        >  SRR4302535.436751/1‑94 (MQ=60)

                                                                                       CGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCA        >  SRR4302535.2318958/1‑94 (MQ=60)

                                                                                        GACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCAT       <  SRR4302535.1612002/94‑1 (MQ=60)

                                                                                         ACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATA      >  SRR4302535.2070237/1‑94 (MQ=60)

                                                                                            ACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCTAGCATGCATAACA   >  SRR4302535.1238989/1‑94 (MQ=60)

                                                                                            ACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACA   >  SRR4302535.651359/1‑94 (MQ=60)

                                                                                            ACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACA   >  SRR4302535.3546872/1‑94 (MQ=60)

                                                                                             CTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  <  SRR4302535.3313784/94‑1 (MQ=60)

                                                                                             CTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  <  SRR4302535.2027986/94‑1 (MQ=60)

                                                                                             CTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  <  SRR4302535.1660811/94‑1 (MQ=60)

TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  >  NC_000913/4366739‑4366925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`