Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,381,510	T→C	Y46H (TAC→CAC)	yjeM →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,381,510	0	T	C	100.0%	841.6 / NA	259	Y46H (TAC→CAC)	yjeM	putative transport
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/136); total (123/136)

Only 100 of 267 total aligned reads displayed.

CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA  >  NC_000913/4381420‑4381599

 cTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGCTCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACt                                                                                        >  1:4131207/1‑93 (MQ=255)

 cTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACt                                                                                        >  2:334220/1‑93 (MQ=255)

 cTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACt                                                                                        >  2:4364641/1‑93 (MQ=255)

  tCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACtt                                                                                       <  1:769049/93‑1 (MQ=255)

  tCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACtt                                                                                       >  1:3961422/1‑93 (MQ=255)

  tCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGCATTTGGATTTGCCAATAGCCCATCGGCTTATCACtt                                                                                       <  1:3568593/93‑1 (MQ=255)

     cacGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAAt                                                                                    >  2:1823067/1‑93 (MQ=255)

      acGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATg                                                                                   >  2:783861/1‑93 (MQ=255)

      acGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATg                                                                                   <  1:3168831/93‑1 (MQ=255)

      acGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATg                                                                                   <  1:4174221/93‑1 (MQ=255)

       cGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATgg                                                                                  >  2:564026/1‑93 (MQ=255)

        gATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATggg                                                                                 >  1:2424011/1‑93 (MQ=255)

         aTAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGt                                                                                <  1:4016613/93‑1 (MQ=255)

         aTAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGt                                                                                <  1:1372558/93‑1 (MQ=255)

          tAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGtt                                                                               >  1:2657157/1‑93 (MQ=255)

            aaaaaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTtat                                                                             >  1:3032865/1‑93 (MQ=255)

             aaaaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTtata                                                                            >  2:3876033/1‑93 (MQ=255)

             aaaaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTACGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTtata                                                                            >  1:3304666/1‑93 (MQ=255)

               aaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCTGCTTATCACTTAATGGGTTATAGt                                                                          >  2:4504689/1‑93 (MQ=255)

               aaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGt                                                                          <  1:4229286/93‑1 (MQ=255)

               aaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGt                                                                          <  1:338578/93‑1 (MQ=255)

               aaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGt                                                                          >  2:1307887/1‑93 (MQ=255)

               aaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGt                                                                          >  2:1255284/1‑93 (MQ=255)

               aaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGt                                                                          >  2:503947/1‑93 (MQ=255)

                aGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTg                                                                         >  2:2027202/1‑93 (MQ=255)

                   tGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGa                                                                      >  1:1575229/1‑93 (MQ=255)

                   tGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGa                                                                      <  1:2224381/93‑1 (MQ=255)

                    gAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAt                                                                     >  1:950602/1‑93 (MQ=255)

                    gAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAt                                                                     >  1:2533829/1‑93 (MQ=255)

                      gTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTc                                                                   >  2:2985939/1‑93 (MQ=255)

                      gTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTc                                                                   <  1:4316473/93‑1 (MQ=255)

                       tCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTcc                                                                  >  1:1844554/1‑93 (MQ=255)

                          gATAGGCCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCtt                                                               >  2:2541814/1‑93 (MQ=255)

                          gATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCtt                                                               <  1:3085675/93‑1 (MQ=255)

                          gATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCtt                                                               <  1:4435148/93‑1 (MQ=255)

                           aTAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCttt                                                              <  2:3691266/93‑1 (MQ=255)

                           aTAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCttt                                                              <  2:371082/93‑1 (MQ=255)

                             aGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTta                                                            <  1:1778738/93‑1 (MQ=255)

                             aGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTta                                                            <  1:54592/93‑1 (MQ=255)

                             aGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTta                                                            <  2:2083642/93‑1 (MQ=255)

                             aGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTta                                                            <  2:3223025/93‑1 (MQ=255)

                              ggACTCATATTGATGCTCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtat                                                           >  2:651167/1‑93 (MQ=255)

                              ggACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtat                                                           >  1:1446898/1‑93 (MQ=255)

                               gACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtata                                                          >  1:2667282/1‑93 (MQ=255)

                               gACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGACTCCCTTTtata                                                          >  2:2355007/1‑93 (MQ=255)

                                gcTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatat                                                         <  1:1983970/92‑1 (MQ=255)

                                aCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatat                                                         >  1:2049422/1‑93 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                        >  2:4424248/1‑93 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                        <  1:4144125/93‑1 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                        <  2:2160053/93‑1 (MQ=255)

                                  tCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTatatat                                                       >  2:3483976/1‑93 (MQ=255)

                                    atatTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAttt                                                     >  2:1947126/1‑93 (MQ=255)

                                     tatTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAtttt                                                    <  1:1181801/93‑1 (MQ=255)

                                     tatTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAtttt                                                    <  1:1636421/93‑1 (MQ=255)

                                      atTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTc                                                   <  2:683329/93‑1 (MQ=255)

                                      atTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTc                                                   <  2:2827941/93‑1 (MQ=255)

                                       ttGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCt                                                  >  2:3073995/1‑93 (MQ=255)

                                         gatgatCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGc                                                >  1:117719/1‑93 (MQ=255)

                                         gatgatCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGc                                                <  2:242597/93‑1 (MQ=255)

                                          atgatCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCa                                               <  2:1017265/93‑1 (MQ=255)

                                          atgatCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCa                                               <  2:1599287/93‑1 (MQ=255)

                                             atCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTg                                            >  1:2076430/1‑93 (MQ=255)

                                              tCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGt                                           <  2:2942122/93‑1 (MQ=255)

                                               cTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGtt                                          >  1:3506005/1‑93 (MQ=255)

                                                tttACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTa                                         <  2:347972/93‑1 (MQ=255)

                                                tttACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTa                                         >  2:1454865/1‑93 (MQ=255)

                                                 ttACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAt                                        <  2:3419568/93‑1 (MQ=255)

                                                 ttACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAt                                        >  2:1195188/1‑93 (MQ=255)

                                                  tACTTCGGTATTTGGATTTG‑CAAAAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTc                                      <  1:23718/93‑1 (MQ=255)

                                                  tACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAtt                                       >  1:4561326/1‑93 (MQ=255)

                                                  tACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAtt                                       <  2:938814/93‑1 (MQ=255)

                                                    cTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCt                                     <  1:1879490/93‑1 (MQ=255)

                                                    cTTCCGCATGTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCt                                     <  2:1901843/93‑1 (MQ=255)

                                                     ttCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCtt                                    <  2:4732/93‑1 (MQ=255)

                                                     ttCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCtt                                    <  1:2328990/93‑1 (MQ=255)

                                                        cGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAt                                 >  1:3679146/1‑93 (MQ=255)

                                                         gTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                                <  2:4023670/93‑1 (MQ=255)

                                                          tATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTc                               <  2:2582131/93‑1 (MQ=255)

                                                          tATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTc                               <  1:4349768/93‑1 (MQ=255)

                                                          tATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTc                               <  2:3363184/93‑1 (MQ=255)

                                                          caTTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTc                               <  1:1353657/92‑1 (MQ=255)

                                                           aTTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTcc                              <  2:409053/93‑1 (MQ=255)

                                                            tttGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCa                             <  2:2195327/93‑1 (MQ=255)

                                                               ggATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTc                          <  1:3245761/93‑1 (MQ=255)

                                                                  tttGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGcc                       <  2:3240001/93‑1 (MQ=255)

                                                                  tttGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGcc                       >  2:1368793/1‑93 (MQ=255)

                                                                      ccAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTaa                   <  2:3251679/93‑1 (MQ=255)

                                                                      ccAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTaa                   <  1:4530742/93‑1 (MQ=255)

                                                                        aaTAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatg                 <  2:2489794/93‑1 (MQ=255)

                                                                         aTAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatga                <  1:1285339/93‑1 (MQ=255)

                                                                          tAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatgat               <  1:2706337/93‑1 (MQ=255)

                                                                               cATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTg          >  1:2552403/1‑93 (MQ=255)

                                                                                aTCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGa         >  2:579337/1‑93 (MQ=255)

                                                                                aTCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTATTTATTCCATTCGCCTTAATGATGGCTGa         >  1:2815159/1‑93 (MQ=255)

                                                                                 tCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGaa        >  1:674478/1‑93 (MQ=255)

                                                                                  cGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGaaa       >  2:1029216/1‑93 (MQ=255)

                                                                                     cTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATgg    >  1:3355632/1‑93 (MQ=255)

                                                                                      ttatcaCTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATggg   >  2:3776374/1‑93 (MQ=255)

                                                                                      ttatcaCTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATggg   >  1:3763481/1‑93 (MQ=255)

                                                                                       tatcaCTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGa  >  1:2915452/1‑93 (MQ=255)

CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA  >  NC_000913/4381420‑4381599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCTG  >  NC_000913/4381418‑4381603

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCA                                                                                              >  SRR4302535.1321996/1‑94 (MQ=60)

  CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACT                                                                                            >  SRR4302535.4159474/1‑94 (MQ=60)

  ACTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGCTCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACT                                                                                            >  SRR4302535.4159473/1‑94 (MQ=60)

   CTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTT                                                                                           >  SRR4302535.3988475/1‑94 (MQ=60)

   CTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTT                                                                                           >  SRR4302535.3071730/1‑94 (MQ=60)

    TCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTA                                                                                          <  SRR4302535.774461/94‑1 (MQ=60)

    TCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGCATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTA                                                                                          <  SRR4302535.3593337/94‑1 (MQ=60)

     CACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAA                                                                                         <  SRR4302535.2022433/94‑1 (MQ=60)

      ACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAAT                                                                                        <  SRR4302535.3988188/94‑1 (MQ=60)

        ACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGG                                                                                      <  SRR4302535.3190782/94‑1 (MQ=60)

        ACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGG                                                                                      <  SRR4302535.1837415/94‑1 (MQ=60)

        ACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGG                                                                                      >  SRR4302535.2471735/1‑94 (MQ=60)

        ACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGG                                                                                      <  SRR4302535.887426/94‑1 (MQ=60)

        ACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGG                                                                                      <  SRR4302535.4202790/94‑1 (MQ=60)

         CGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGG                                                                                     <  SRR4302535.3196244/94‑1 (MQ=60)

         CGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGG                                                                                     <  SRR4302535.4246144/94‑1 (MQ=60)

         CGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGG                                                                                     >  SRR4302535.2441476/1‑94 (MQ=60)

          GATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGT                                                                                    >  SRR4302535.3731460/1‑94 (MQ=60)

           ATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTT                                                                                   >  SRR4302535.2623538/1‑94 (MQ=60)

           ATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTT                                                                                   >  SRR4302535.2676193/1‑94 (MQ=60)

           ATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTT                                                                                   <  SRR4302535.4044082/94‑1 (MQ=60)

           ATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTT                                                                                   <  SRR4302535.1382366/94‑1 (MQ=60)

            TAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTA                                                                                  >  SRR4302535.711690/1‑94 (MQ=60)

             AAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTAT                                                                                 >  SRR4302535.3054094/1‑94 (MQ=60)

             AAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTAT                                                                                 >  SRR4302535.3356734/1‑94 (MQ=60)

              AAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTACGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATA                                                                                >  SRR4302535.3327656/1‑94 (MQ=60)

               AAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAG                                                                               <  SRR4302535.1288426/94‑1 (MQ=60)

                AAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGT                                                                              <  SRR4302535.3532013/94‑1 (MQ=60)

                 AAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTG                                                                             <  SRR4302535.4258232/94‑1 (MQ=60)

                 AAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTG                                                                             <  SRR4302535.3302633/94‑1 (MQ=60)

                 AAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTG                                                                             <  SRR4302535.340922/94‑1 (MQ=60)

                    ATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGA                                                                          >  SRR4302535.1586596/1‑94 (MQ=60)

                     TGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAT                                                                         >  SRR4302535.957333/1‑94 (MQ=60)

                     TGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAT                                                                         >  SRR4302535.2552079/1‑94 (MQ=60)

                     TGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAT                                                                         <  SRR4302535.2240213/94‑1 (MQ=60)

                      GAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATT                                                                        <  SRR4302535.1378549/94‑1 (MQ=60)

                       AGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTC                                                                       >  SRR4302535.1808823/1‑94 (MQ=60)

                        GTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCC                                                                      >  SRR4302535.1857852/1‑94 (MQ=60)

                        GTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCC                                                                      <  SRR4302535.4346002/94‑1 (MQ=60)

                          CTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCT                                                                    >  SRR4302535.416996/1‑94 (MQ=60)

                          CTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCT                                                                    <  SRR4302535.4325784/94‑1 (MQ=60)

                           TGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTT                                                                   <  SRR4302535.410204/94‑1 (MQ=60)

                           TGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTT                                                                   >  SRR4302535.2378419/1‑94 (MQ=60)

                           TGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTT                                                                   >  SRR4302535.2274393/1‑94 (MQ=60)

                            GATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTT                                                                  <  SRR4302535.3107168/94‑1 (MQ=60)

                            GATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTT                                                                  <  SRR4302535.4465546/94‑1 (MQ=60)

                             ATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTT                                                                 >  SRR4302535.3937243/1‑94 (MQ=60)

                             ATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTT                                                                 <  SRR4302535.4714828/94‑1 (MQ=60)

                             ATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTT                                                                 >  SRR4302535.4590473/1‑94 (MQ=60)

                             ATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTT                                                                 >  SRR4302535.1959711/1‑94 (MQ=60)

                             ATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTT                                                                 >  SRR4302535.3641653/1‑94 (MQ=60)

                              TAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTA                                                                <  SRR4302535.975834/94‑1 (MQ=60)

                               AGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTAT                                                               <  SRR4302535.1791618/94‑1 (MQ=60)

                               AGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTAT                                                               <  SRR4302535.54993/94‑1 (MQ=60)

                               AGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTAT                                                               >  SRR4302535.1457246/1‑94 (MQ=60)

                               AGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTAT                                                               <  SRR4302535.142628/94‑1 (MQ=60)

                                GGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATA                                                              >  SRR4302535.2958504/1‑94 (MQ=60)

                                GGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATA                                                              >  SRR4302535.2686376/1‑94 (MQ=60)

                                 GACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATAT                                                             >  SRR4302535.2064178/1‑94 (MQ=60)

                                 GACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATAT                                                             <  SRR4302535.2774965/94‑1 (MQ=60)

                                  GCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATA                                                            <  SRR4302535.1998253/94‑1 (MQ=60)

                                  ACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATA                                                            <  SRR4302535.2581457/94‑1 (MQ=60)

                                  ACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATA                                                            <  SRR4302535.4193277/94‑1 (MQ=60)

                                  ACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATA                                                            >  SRR4302535.1337390/1‑94 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                           <  SRR4302535.4172502/94‑1 (MQ=60)

                                     CATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTT                                                         <  SRR4302535.2427344/94‑1 (MQ=60)

                                     CATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTT                                                         >  SRR4302535.1723860/1‑94 (MQ=60)

                                      ATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTT                                                        >  SRR4302535.2903838/1‑94 (MQ=60)

                                      ATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTT                                                        >  SRR4302535.1359671/1‑94 (MQ=60)

                                       TATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTC                                                       <  SRR4302535.1648244/94‑1 (MQ=60)

                                       TATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTC                                                       <  SRR4302535.1190240/94‑1 (MQ=60)

                                       TATTGATGATCTTTACTTCCGCATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTC                                                       <  SRR4302535.329244/94‑1 (MQ=60)

                                       TATTGATGATCTTTACTTCCGCATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTC                                                       <  SRR4302535.3543169/94‑1 (MQ=60)

                                        ATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCT                                                      <  SRR4302535.3330437/94‑1 (MQ=60)

                                        ATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCT                                                      >  SRR4302535.1274041/1‑94 (MQ=60)

                                        ATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCT                                                      >  SRR4302535.1535454/1‑94 (MQ=60)

                                         TTNANGNTCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTG                                                     <  SRR4302535.958179/94‑1 (MQ=60)

                                         TTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTG                                                     <  SRR4302535.2209421/94‑1 (MQ=60)

                                          TGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGC                                                    >  SRR4302535.118545/1‑94 (MQ=60)

                                          TGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATGCCCTTTTATATATTTTCTGC                                                    >  SRR4302535.3132820/1‑94 (MQ=60)

                                           GATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCA                                                   <  SRR4302535.1002583/94‑1 (MQ=60)

                                             TGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATT                                                 >  SRR4302535.292878/1‑94 (MQ=60)

                                              GATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTG                                                >  SRR4302535.2091388/1‑94 (MQ=60)

                                               ATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGT                                               >  SRR4302535.2133733/1‑94 (MQ=60)

                                               ATCTTTACTTCCGCATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGT                                               <  SRR4302535.595353/94‑1 (MQ=60)

                                                TCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTT                                              <  SRR4302535.2557144/94‑1 (MQ=60)

                                                TCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTT                                              >  SRR4302535.3530372/1‑94 (MQ=60)

                                                   TTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATT                                           <  SRR4302535.3724054/94‑1 (MQ=60)

                                                   TTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATT                                           >  SRR4302535.4592456/1‑94 (MQ=60)

                                                    TACTTCGGTATTTGGATTTG‑CAAAAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCT                                         <  SRR4302535.23905/94‑1 (MQ=60)

                                                    TACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTC                                          <  SRR4302535.907093/94‑1 (MQ=60)

                                                    TACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTC                                          <  SRR4302535.4370363/94‑1 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                        >  SRR4302535.2020408/1‑94 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                        <  SRR4302535.4111963/94‑1 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                        <  SRR4302535.3463466/94‑1 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                        >  SRR4302535.2401013/1‑94 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                        <  SRR4302535.1893033/94‑1 (MQ=60)

                                                       TTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTT                                       >  SRR4302535.4677459/1‑94 (MQ=60)

                                                       TTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTT                                       <  SRR4302535.2345648/94‑1 (MQ=60)

                                                         CCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAT                                     >  SRR4302535.3704611/1‑94 (MQ=60)

                                                         CCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAT                                     >  SRR4302535.149589/1‑94 (MQ=60)

                                                         CCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAT                                     <  SRR4302535.1594842/94‑1 (MQ=60)

                                                            TATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCC                                  <  SRR4302535.4379524/94‑1 (MQ=60)

                                                            CATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCC                                  <  SRR4302535.1363342/94‑1 (MQ=60)

                                                               TTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATT                               >  SRR4302535.3128098/1‑94 (MQ=60)

                                                               TTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATT                               >  SRR4302535.2703240/1‑94 (MQ=60)

                                                                 GGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCG                             <  SRR4302535.3268299/94‑1 (MQ=60)

                                                                 GGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCG                             >  SRR4302535.1860345/1‑94 (MQ=60)

                                                                      TGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTA                        <  SRR4302535.2276000/94‑1 (MQ=60)

                                                                        CCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAAT                      <  SRR4302535.4394775/94‑1 (MQ=60)

                                                                        CCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAAT                      >  SRR4302535.2826103/1‑94 (MQ=60)

                                                                        CCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAAT                      <  SRR4302535.4561756/94‑1 (MQ=60)

                                                                        CCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAAT                      <  SRR4302535.591363/94‑1 (MQ=60)

                                                                        CCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAAT                      >  SRR4302535.2086625/1‑94 (MQ=60)

                                                                         CAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATG                     >  SRR4302535.423458/1‑94 (MQ=60)

                                                                         CAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATG                     >  SRR4302535.2545702/1‑94 (MQ=60)

                                                                          AATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGA                    >  SRR4302535.2678460/1‑94 (MQ=60)

                                                                          AATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGA                    >  SRR4302535.4509522/1‑94 (MQ=60)

                                                                           ATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGAT                   <  SRR4302535.1294499/94‑1 (MQ=60)

                                                                           ATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGAT                   >  SRR4302535.308116/1‑94 (MQ=60)

                                                                            TAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATG                  <  SRR4302535.2725676/94‑1 (MQ=60)

                                                                             AGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGG                 >  SRR4302535.3461491/1‑94 (MQ=60)

                                                                             AGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGG                 >  SRR4302535.3403407/1‑94 (MQ=60)

                                                                               CCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCT               >  SRR4302535.1653936/1‑94 (MQ=60)

                                                                               CCCATCGGCTTATCACTTAATGGGCTATAGTGCGATTCCCTTTTATATGTTTTATGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCT               >  SRR4302535.2680075/1‑94 (MQ=60)

                                                                                CCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTG              >  SRR4302535.2570782/1‑94 (MQ=60)

                                                                                CCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTG              >  SRR4302535.1956834/1‑94 (MQ=60)

                                                                                 CATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGA             >  SRR4302535.4342427/1‑94 (MQ=60)

                                                                                 CATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTATTTATTCCATTCGCCTTAATGATGGCTGA             >  SRR4302535.2835160/1‑94 (MQ=60)

                                                                                  ATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAA            >  SRR4302535.679191/1‑94 (MQ=60)

                                                                                  ATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAA            >  SRR4302535.403498/1‑94 (MQ=60)

                                                                                     GGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATG         <  SRR4302535.4436180/94‑1 (MQ=60)

                                                                                      GCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGG        >  SRR4302535.4560082/1‑94 (MQ=60)

                                                                                      GCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGG        >  SRR4302535.3378997/1‑94 (MQ=60)

                                                                                       CTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGG       >  SRR4302535.3789480/1‑94 (MQ=60)

                                                                                        TTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA      <  SRR4302535.1185704/94‑1 (MQ=60)

                                                                                        TTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA      >  SRR4302535.2936040/1‑94 (MQ=60)

                                                                                         TATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAG     <  SRR4302535.1396022/94‑1 (MQ=60)

                                                                                         TATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAG     >  SRR4302535.281990/1‑94 (MQ=60)

                                                                                          ATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGC    >  SRR4302535.2409832/1‑94 (MQ=60)

                                                                                          ATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGC    <  SRR4302535.4229588/94‑1 (MQ=60)

                                                                                          ATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGC    <  SRR4302535.1514938/94‑1 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT   >  SRR4302535.1524006/1‑94 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT   <  SRR4302535.30167/94‑1 (MQ=60)

                                                                                            CACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGTGAGCTG  >  SRR4302535.4124273/1‑94 (MQ=60)

                                                                                            CACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCTG  >  SRR4302535.1303323/1‑94 (MQ=60)

                                                                                            CACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCTG  >  SRR4302535.3750424/1‑94 (MQ=60)

                                                                                            CACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCTG  <  SRR4302535.2169073/94‑1 (MQ=60)

                                                                                            CACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCTG  <  SRR4302535.3424311/94‑1 (MQ=60)

                                                                                            CACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATCGGAGCTG  >  SRR4302535.875587/1‑94 (MQ=60)

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCTG  >  NC_000913/4381418‑4381603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`