Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,406,298 |
A→G |
Q689Q (CAA→CAG) |
b4179 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,406,298 | 0 | A | G | 100.0%
| 639.2
/ NA
| 201 | Q689Q (CAA→CAG) | b4179 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (103/98); total (103/98) |
Only 100 of 207 total aligned reads displayed.
CTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCA > NC_000913/4406208‑4406386
|
cgtccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCt < 2:3102243/93‑1 (MQ=255)
cgtccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCt < 1:4480805/93‑1 (MQ=255)
cgtccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCt > 1:3076837/1‑93 (MQ=255)
ccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGAt < 2:3840323/93‑1 (MQ=255)
ccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGAt < 1:2320416/93‑1 (MQ=255)
ccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGAt < 1:2032516/93‑1 (MQ=255)
ccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCCGAt < 1:3465459/93‑1 (MQ=255)
cgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATg > 2:4264025/1‑93 (MQ=255)
cgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATg > 1:2090714/1‑93 (MQ=255)
cgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATg > 2:2746218/1‑93 (MQ=255)
cgtcTGGACGACTTGTTCATTGAAGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATg > 1:847360/1‑93 (MQ=255)
tcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATggg > 1:429678/1‑93 (MQ=255)
cTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATgggg > 1:3600880/1‑93 (MQ=255)
cTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATgggg < 1:632965/93‑1 (MQ=255)
tGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATggggg > 2:45577/1‑93 (MQ=255)
tGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATggggg > 2:3002133/1‑93 (MQ=255)
gacgacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGaa > 1:489206/1‑93 (MQ=255)
gacgacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGaa < 1:4467588/93‑1 (MQ=255)
acgacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAAt > 1:4525420/1‑93 (MQ=255)
acgacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAAt > 1:126195/1‑93 (MQ=255)
acTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCa < 2:3007254/93‑1 (MQ=255)
ttGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGc > 1:3775608/1‑93 (MQ=255)
ttGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGc < 2:4361750/93‑1 (MQ=255)
gTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCgg > 2:3538273/1‑93 (MQ=255)
cATTGATGGTCTGGTCCATGTCTCTTGGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCa < 2:2484689/93‑1 (MQ=255)
cATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCa > 1:2434433/1‑93 (MQ=255)
ttGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGa > 1:2137152/1‑93 (MQ=255)
tggtctggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTa > 2:971327/1‑93 (MQ=255)
gtctggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATc < 1:2734391/93‑1 (MQ=255)
gtctggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATc > 1:1273917/1‑93 (MQ=255)
tggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGcc > 2:55074/1‑93 (MQ=255)
ggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCt > 1:1487942/1‑93 (MQ=255)
ccATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTggg < 1:1912885/93‑1 (MQ=255)
ccATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTggg > 2:2607893/1‑93 (MQ=255)
ccATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTggg > 1:1563133/1‑93 (MQ=255)
cATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGc > 2:2002720/1‑93 (MQ=255)
aTGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTgggag > 1:3242647/1‑91 (MQ=255)
aTGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCg > 2:1456403/1‑93 (MQ=255)
aTGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCg > 2:948080/1‑93 (MQ=255)
tGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGa < 1:352658/93‑1 (MQ=255)
gTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGGCAGACTTATCGCCTGGGCGAt > 2:4022405/1‑93 (MQ=255)
gTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAt < 1:107037/93‑1 (MQ=255)
gTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAt < 1:1004720/93‑1 (MQ=255)
gTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAt < 1:2524145/93‑1 (MQ=255)
gTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAt > 1:2492504/1‑93 (MQ=255)
gTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAt > 1:2426463/1‑93 (MQ=255)
tctcTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATc > 1:1505839/1‑93 (MQ=255)
ctctTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATcg > 2:168837/1‑93 (MQ=255)
ctctTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATcg < 1:913008/93‑1 (MQ=255)
tctTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATcgc > 1:1800029/1‑93 (MQ=255)
ttCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGt < 1:397620/93‑1 (MQ=255)
ttCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGt > 2:749568/1‑93 (MQ=255)
ttCGCTGGACAATGACTACTATCGCTTTGACCAGATAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGt > 1:1615740/1‑93 (MQ=255)
tCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTg < 1:3801845/93‑1 (MQ=255)
cGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTgg < 1:1201505/93‑1 (MQ=255)
cGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTgg < 2:1287552/93‑1 (MQ=255)
cGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTgg < 2:1311198/93‑1 (MQ=255)
cGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGAAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTgg < 2:1243659/93‑1 (MQ=255)
gCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGa < 1:2652419/93‑1 (MQ=255)
cTGGACAATGTCTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGTAGAACCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGaa < 2:2203473/93‑1 (MQ=255)
tGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAg > 1:2966101/1‑93 (MQ=255)
ggACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGt < 2:677285/93‑1 (MQ=255)
ggACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATACAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGt > 2:771583/1‑93 (MQ=255)
gACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGtt < 2:4637006/93‑1 (MQ=255)
gACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGtt < 2:3340641/93‑1 (MQ=255)
cAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcg > 1:4245652/1‑93 (MQ=255)
aaTGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcgc < 2:2690229/93‑1 (MQ=255)
aaTGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGAAAGTTcgc < 2:4584900/93‑1 (MQ=255)
aTGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcgcg < 1:2873923/93‑1 (MQ=255)
aTGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcgcg > 1:3392446/1‑93 (MQ=255)
gACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTc > 2:824371/1‑93 (MQ=255)
ctactaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGa > 2:4158479/1‑93 (MQ=255)
tactaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTTGCGTCGaa > 2:4058907/1‑93 (MQ=255)
tctaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAg < 1:3482363/92‑1 (MQ=255)
actaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAg < 1:3219648/93‑1 (MQ=255)
actaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAg > 1:2497906/1‑93 (MQ=255)
taTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCg > 1:529185/1‑93 (MQ=255)
taTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGGTCGCGTCGAAGCg > 2:1795053/1‑93 (MQ=255)
aTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCgg > 1:877554/1‑93 (MQ=255)
tCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGt < 1:716630/93‑1 (MQ=255)
cGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGtt < 1:3369466/93‑1 (MQ=255)
tttGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGTCTTATCGCCTGGGCGATCGCGTGGAAGGTCGCGTCGAAGCGGTTCat > 1:4211361/1‑93 (MQ=255)
tttGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAat > 2:3702642/1‑93 (MQ=255)
tttGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAat < 1:66939/93‑1 (MQ=255)
ttGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAata < 2:3291531/93‑1 (MQ=255)
tGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAatat < 2:3754726/93‑1 (MQ=255)
tGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAatat < 1:2269150/93‑1 (MQ=255)
tGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAatat < 1:931735/93‑1 (MQ=255)
tGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAatat < 2:3237064/93‑1 (MQ=255)
tGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAatat < 1:363379/93‑1 (MQ=255)
aCCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATgg > 1:4191619/1‑93 (MQ=255)
ccAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGa < 1:4056894/93‑1 (MQ=255)
cAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGAc > 2:1336543/1‑93 (MQ=255)
cAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGAc > 1:4676567/1‑93 (MQ=255)
aGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACg > 1:1987644/1‑93 (MQ=255)
ggTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGa < 1:3402758/93‑1 (MQ=255)
ggTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGa < 2:1708617/93‑1 (MQ=255)
ggTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGGTAATATGGACGa > 2:3407594/1‑93 (MQ=255)
tAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAgc > 2:2351438/1‑93 (MQ=255)
ggCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCa < 2:4101051/93‑1 (MQ=255)
|
CTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCA > NC_000913/4406208‑4406386
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAATC > NC_000913/4406205‑4406391
|
CTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCATGTAGGGCAG > SRR4302535.3474057/1‑94 (MQ=60)
CTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAG > SRR4302535.3130885/1‑94 (MQ=60)
CTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAG > SRR4302535.182577/1‑94 (MQ=60)
TTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGC > SRR4302535.1706471/1‑94 (MQ=60)
TTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGC > SRR4302535.3158987/1‑94 (MQ=60)
TCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCG < SRR4302535.1042600/94‑1 (MQ=60)
TCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCG < SRR4302535.764810/94‑1 (MQ=60)
CTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGC < SRR4302535.4364204/94‑1 (MQ=60)
CTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGC > SRR4302535.339922/1‑94 (MQ=60)
TCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCT > SRR4302535.3098300/1‑94 (MQ=60)
CGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTG < SRR4302535.4511561/94‑1 (MQ=60)
CGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTG > SRR4302535.1720299/1‑94 (MQ=60)
CGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTG < SRR4302535.203448/94‑1 (MQ=60)
GTCCTTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGA > SRR4302535.2999897/1‑94 (MQ=60)
TCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGTCCAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGAT > SRR4302535.3372221/1‑94 (MQ=60)
CCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATG < SRR4302535.2047164/94‑1 (MQ=60)
CCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATG < SRR4302535.2337025/94‑1 (MQ=60)
CCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATG > SRR4302535.2105780/1‑94 (MQ=60)
CCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATG < SRR4302535.2159417/94‑1 (MQ=60)
CCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCCGATG < SRR4302535.3489543/94‑1 (MQ=60)
CCGTCTGGACGACTTGTTCATTGAAGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATG > SRR4302535.853320/1‑94 (MQ=60)
GTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGG > SRR4302535.432666/1‑94 (MQ=60)
GTCTGGACGACGTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGG < SRR4302535.3674500/94‑1 (MQ=60)
TCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGG > SRR4302535.3625866/1‑94 (MQ=60)
TCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGG < SRR4302535.4258639/94‑1 (MQ=60)
TCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGG < SRR4302535.521197/94‑1 (MQ=60)
CTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGG < SRR4302535.637376/94‑1 (MQ=60)
TGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGA < SRR4302535.1506039/94‑1 (MQ=60)
GGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAA > SRR4302535.492642/1‑94 (MQ=60)
GACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAAT > SRR4302535.3559290/1‑94 (MQ=60)
GACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAAT > SRR4302535.4556421/1‑94 (MQ=60)
GACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAAT < SRR4302535.4498242/94‑1 (MQ=60)
GACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAAT > SRR4302535.127085/1‑94 (MQ=60)
ACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAG < SRR4302535.908373/94‑1 (MQ=60)
CTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGC > SRR4302535.3801639/1‑94 (MQ=60)
TCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCA > SRR4302535.2451971/1‑94 (MQ=60)
TATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAG < SRR4302535.290104/94‑1 (MQ=60)
CATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAG > SRR4302535.408323/1‑94 (MQ=60)
CATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAG < SRR4302535.2636552/94‑1 (MQ=60)
ATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGA > SRR4302535.2152545/1‑94 (MQ=60)
GGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATC > SRR4302535.3505299/1‑94 (MQ=60)
GGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATC > SRR4302535.230366/1‑94 (MQ=60)
GGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATC > SRR4302535.1283012/1‑94 (MQ=60)
GTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCG < SRR4302535.2754032/94‑1 (MQ=60)
GTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCG < SRR4302535.2753902/94‑1 (MQ=60)
TGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCT < SRR4302535.3826918/94‑1 (MQ=60)
TGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCT < SRR4302535.630693/94‑1 (MQ=60)
TGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCT > SRR4302535.1498605/1‑94 (MQ=60)
GGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTG > SRR4302535.2442193/1‑94 (MQ=60)
GTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGG > SRR4302535.3325787/1‑94 (MQ=60)
GTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGG < SRR4302535.4201889/94‑1 (MQ=60)
GTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGG < SRR4302535.1276730/94‑1 (MQ=60)
GTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGG < SRR4302535.450946/94‑1 (MQ=60)
TCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGG < SRR4302535.4237696/94‑1 (MQ=60)
TCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGG > SRR4302535.1574395/1‑94 (MQ=60)
CCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGC < SRR4302535.1926670/94‑1 (MQ=60)
CATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCG > SRR4302535.83165/1‑94 (MQ=60)
CATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCG < SRR4302535.3262185/94‑1 (MQ=60)
CATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGAG > SRR4302535.3265171/1‑94 (MQ=60)
ATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTCGGCGA > SRR4302535.2512864/1‑94 (MQ=60)
TGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAT > SRR4302535.2510492/1‑94 (MQ=60)
TGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAT < SRR4302535.355091/94‑1 (MQ=60)
TGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGAT > SRR4302535.2443946/1‑94 (MQ=60)
GTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATC < SRR4302535.107796/94‑1 (MQ=60)
GTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATC > SRR4302535.1516665/1‑94 (MQ=60)
GTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATC < SRR4302535.1011857/94‑1 (MQ=60)
GTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATC < SRR4302535.2542333/94‑1 (MQ=60)
CTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGC > SRR4302535.1813042/1‑94 (MQ=60)
CTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGC < SRR4302535.919496/94‑1 (MQ=60)
CTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGT > SRR4302535.142168/1‑94 (MQ=60)
CTTCGCTGGACAATGACTACTATCGCTTTGACCAGATAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGT > SRR4302535.1627384/1‑94 (MQ=60)
TTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTG < SRR4302535.400407/94‑1 (MQ=60)
TCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGG < SRR4302535.3828051/94‑1 (MQ=60)
TCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGG > SRR4302535.1956690/1‑94 (MQ=60)
CGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGA < SRR4302535.1210110/94‑1 (MQ=60)
GCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAA < SRR4302535.2671421/94‑1 (MQ=60)
GCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAA < SRR4302535.1254555/94‑1 (MQ=60)
CTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAG > SRR4302535.2986911/1‑94 (MQ=60)
TGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGT > SRR4302535.2201081/1‑94 (MQ=60)
ACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCG > SRR4302535.4274715/1‑94 (MQ=60)
ACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCG < SRR4302535.4529580/94‑1 (MQ=60)
CAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGC > SRR4302535.312718/1‑94 (MQ=60)
AATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCG > SRR4302535.3416050/1‑94 (MQ=60)
AATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGCGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCG < SRR4302535.2704131/94‑1 (MQ=60)
ATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGT > SRR4302535.3420953/1‑94 (MQ=60)
ATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGT < SRR4302535.2894288/94‑1 (MQ=60)
TGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTC < SRR4302535.1877135/94‑1 (MQ=60)
GACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCG > SRR4302535.855703/1‑94 (MQ=60)
ACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGA > SRR4302535.1624780/1‑94 (MQ=60)
ACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGA > SRR4302535.2464392/1‑94 (MQ=60)
ACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGGCGA > SRR4302535.921058/1‑94 (MQ=60)
TACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAG > SRR4302535.3637790/1‑94 (MQ=60)
TACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAG > SRR4302535.2515925/1‑94 (MQ=60)
TCTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGC < SRR4302535.3506546/94‑1 (MQ=60)
ACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGC < SRR4302535.3241958/94‑1 (MQ=60)
ACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGC > SRR4302535.3519589/1‑94 (MQ=60)
CTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCG > SRR4302535.532886/1‑94 (MQ=60)
CTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCG < SRR4302535.4302480/94‑1 (MQ=60)
TATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGG > SRR4302535.883768/1‑94 (MQ=60)
TCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTT < SRR4302535.721665/94‑1 (MQ=60)
TCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTT > SRR4302535.2075011/1‑94 (MQ=60)
CGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTA < SRR4302535.3392910/94‑1 (MQ=60)
CGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTA > SRR4302535.344533/1‑94 (MQ=60)
GCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAA > SRR4302535.154234/1‑94 (MQ=60)
CTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGTCTTATCGCCTGGGCGATCGCGTGGAAGGTCGCGTCGAAGCGGTTCAT > SRR4302535.4240185/1‑94 (MQ=60)
CTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAAT < SRR4302535.638090/94‑1 (MQ=60)
CTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAAT < SRR4302535.2126249/94‑1 (MQ=60)
CTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAAT > SRR4302535.4581647/1‑94 (MQ=60)
TTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATA < SRR4302535.67439/94‑1 (MQ=60)
TGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATG < SRR4302535.938325/94‑1 (MQ=60)
TGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATG < SRR4302535.675297/94‑1 (MQ=60)
TGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATG < SRR4302535.365883/94‑1 (MQ=60)
TGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATG < SRR4302535.481339/94‑1 (MQ=60)
TGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATG < SRR4302535.2285329/94‑1 (MQ=60)
GACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGG < SRR4302535.4244826/94‑1 (MQ=60)
GACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGG > SRR4302535.4220304/1‑94 (MQ=60)
CCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGAC > SRR4302535.4708131/1‑94 (MQ=60)
CCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGAC < SRR4302535.4084666/94‑1 (MQ=60)
CCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGAC < SRR4302535.1204575/94‑1 (MQ=60)
CCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGAC < SRR4302535.2526132/94‑1 (MQ=60)
CAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACG > SRR4302535.2001959/1‑94 (MQ=60)
CAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACG < SRR4302535.2444386/94‑1 (MQ=60)
CAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGCTCGCGTCGAAGCGGTTAATATGGACG > SRR4302535.393848/1‑94 (MQ=60)
AGGTAGGGCAGCGCCTGCTGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGGAGTTCGCGGCGAGGCGGTTAATATGGACGA > SRR4302535.1027977/1‑94 (MQ=60)
GGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAG < SRR4302535.3426437/94‑1 (MQ=60)
GTGGGGCAGCGTCTGATGGGGGAAACCAGCAGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGC < SRR4302535.3622589/94‑1 (MQ=60)
AGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAAT < SRR4302535.2727594/94‑1 (MQ=60)
GCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAATC < SRR4302535.1622362/94‑1 (MQ=60)
|
CTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAATC > NC_000913/4406205‑4406391
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
