Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,409,046 |
C→T |
A56V (GCC→GTC) |
yjfK → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,409,046 | 0 | C | T | 100.0%
| 606.2
/ NA
| 177 | A56V (GCC→GTC) | yjfK | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (86/91); total (86/91) |
Only 100 of 197 total aligned reads displayed.
TCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGCCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCG > NC_000913/4408956‑4409135
|
tcAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGCGAGGAATTTACGGTAgtcg > 1:3278976/1‑93 (MQ=255)
aTAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGtcgccg > 2:800433/1‑93 (MQ=255)
tAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGt < 2:4269272/93‑1 (MQ=255)
gTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGGAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCa > 2:4335592/1‑93 (MQ=255)
gTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCa > 1:3037800/1‑93 (MQ=255)
gTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCa < 1:1540757/93‑1 (MQ=255)
tGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAGTTTACGGTAGTCGCCGTCAg > 1:3962373/1‑93 (MQ=255)
tGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAg > 1:10286/1‑93 (MQ=255)
ggCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGc > 2:2706748/1‑93 (MQ=255)
gCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGcc < 1:1271910/93‑1 (MQ=255)
gCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGcc > 2:2212309/1‑93 (MQ=255)
cTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCca > 2:446275/1‑93 (MQ=255)
cTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCca > 1:3920865/1‑93 (MQ=255)
tACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACAt > 1:1795/1‑93 (MQ=255)
aCGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATc < 1:1730413/93‑1 (MQ=255)
cGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCg > 1:2009820/1‑93 (MQ=255)
cGCCCGACAAGTTAGCGTGTCGTTTGCTGGATGAGGAATTGCGGATGGCGCTGCCGGGTGAGGAATGTACGGTAGTCGCCGTCAGCCACATCg < 2:564214/93‑1 (MQ=255)
gCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGa < 1:417488/93‑1 (MQ=255)
gCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGa > 1:1321262/1‑93 (MQ=255)
cTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGAt > 1:1806066/1‑93 (MQ=255)
tCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATc > 2:2346648/1‑93 (MQ=255)
tCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATc < 2:1836529/93‑1 (MQ=255)
tCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATc > 1:4535346/1‑93 (MQ=255)
tCGACACGTTAGCGTTACGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATc < 1:3192033/93‑1 (MQ=255)
cGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCCCATCGATCt > 2:2806590/1‑93 (MQ=255)
cGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCt < 2:3837922/93‑1 (MQ=255)
cacGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTggg < 2:2619621/93‑1 (MQ=255)
cGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGggcg > 1:3211772/1‑93 (MQ=255)
gTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGggcgg < 1:1968949/93‑1 (MQ=255)
ttAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGggcggc > 1:4678340/1‑93 (MQ=255)
ttAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGggcggc > 1:4596649/1‑93 (MQ=255)
ggtttcgtttGCTGGAATATGAATGGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTa < 2:4354947/92‑1 (MQ=255)
gtttcgtttGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAg > 2:1033250/1‑93 (MQ=255)
gtttcgtttGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAg > 1:4118206/1‑93 (MQ=255)
tttcgtttGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGt > 1:2491347/1‑93 (MQ=255)
gtgcgttgGGTGGAAGATGAATTTCTGATTGCGCTGCGGGGTGAGGAATTTGCGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGt < 2:1250632/90‑1 (MQ=255)
gtttGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGa > 1:343468/1‑93 (MQ=255)
tttGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGAt > 2:3991406/1‑93 (MQ=255)
ttgttgGAAAATGAATTGCTGAGTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGAtt < 2:3722292/93‑1 (MQ=255)
gCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGAtttt > 1:2394037/1‑93 (MQ=255)
gCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGAtttt < 2:3097124/93‑1 (MQ=255)
cTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTc < 1:1058238/93‑1 (MQ=255)
ggAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCg > 2:3145324/1‑93 (MQ=255)
gAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGc > 2:3482185/1‑93 (MQ=255)
aGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGcta > 1:3498076/1‑93 (MQ=255)
gATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGctac > 2:1723302/1‑93 (MQ=255)
aTGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGctact > 2:1817058/1‑93 (MQ=255)
tGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGctacta < 1:613897/93‑1 (MQ=255)
tGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGctacta < 2:381516/93‑1 (MQ=255)
tGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGctacta > 1:3134694/1‑93 (MQ=255)
tGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGctacta > 2:1270163/1‑93 (MQ=255)
gAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCtactac > 2:1884397/1‑93 (MQ=255)
aaTTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTaca > 1:4295225/1‑93 (MQ=255)
aaTTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTaca > 1:1365602/1‑93 (MQ=255)
aTTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTacac < 1:394985/93‑1 (MQ=255)
aTTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTacac < 1:1499764/93‑1 (MQ=255)
aTTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTacac > 2:2427760/1‑93 (MQ=255)
aTTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTacac < 2:1560551/93‑1 (MQ=255)
aTTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGGAGTCAGATTTTCCGCTACTacac > 2:4675018/1‑93 (MQ=255)
aTTGCTGAATGCGCTGCCGCGTGAGGAAATTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGAATTTCCGATACTacat > 2:4563638/1‑92 (MQ=255)
ttGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTacaat > 1:2231900/1‑91 (MQ=255)
ttGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACt < 2:2001289/93‑1 (MQ=255)
ttGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACt < 1:2170623/93‑1 (MQ=255)
gCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTc > 1:671266/1‑93 (MQ=255)
ttGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCg < 1:3152155/93‑1 (MQ=255)
tGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGa < 1:3694102/93‑1 (MQ=255)
gcgcTGCCGGGTGAGAAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGAt < 2:4111004/93‑1 (MQ=255)
gcTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGa > 1:1646677/1‑93 (MQ=255)
ccTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGa < 1:1766246/92‑1 (MQ=255)
gCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGtt > 2:1595026/1‑93 (MQ=255)
gCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGtt > 2:138552/1‑93 (MQ=255)
gCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGtt < 1:2467736/93‑1 (MQ=255)
ccGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGttt > 1:2106638/1‑93 (MQ=255)
cGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTc < 1:3064323/93‑1 (MQ=255)
cGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTc < 2:663224/93‑1 (MQ=255)
cGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTc < 1:4005547/93‑1 (MQ=255)
ggTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTg > 1:1892611/1‑93 (MQ=255)
tGAGAAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCa < 2:3943466/93‑1 (MQ=255)
gAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCaa < 2:358429/93‑1 (MQ=255)
ggAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAAt > 2:868068/1‑93 (MQ=255)
agAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAAt > 1:4423343/2‑93 (MQ=255)
gAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATc < 1:3001536/93‑1 (MQ=255)
aaTTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCa < 1:2865612/93‑1 (MQ=255)
aaTTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCa > 1:2634912/1‑93 (MQ=255)
aTTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCaa < 2:1452229/93‑1 (MQ=255)
aTTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCaa < 2:4156699/93‑1 (MQ=255)
aTTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCaa < 1:2973527/93‑1 (MQ=255)
aTTTACGGTAGTCGCCGCCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCaa < 1:569645/93‑1 (MQ=255)
ttACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATa < 2:584821/93‑1 (MQ=255)
ttACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATa > 2:551257/1‑93 (MQ=255)
ttACGGTAGTCCCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATa < 2:1192266/93‑1 (MQ=255)
tACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTCCTACACTTCAGGCGATGAGTTTCTGCAAATCAATac < 2:169402/93‑1 (MQ=255)
tACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATac < 1:2667559/93‑1 (MQ=255)
tACGGTAGCCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATac < 1:891839/93‑1 (MQ=255)
cGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATacca < 1:375885/93‑1 (MQ=255)
cGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATacca < 1:1853026/93‑1 (MQ=255)
ggTAGTCGCCTTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATaccac < 1:2421821/93‑1 (MQ=255)
ggTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATaccac < 1:388926/93‑1 (MQ=255)
ggTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATaccac > 2:3279136/1‑93 (MQ=255)
gTAGTCGCCGCCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATaccacc < 1:1023689/93‑1 (MQ=255)
|
TCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGCCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCG > NC_000913/4408956‑4409135
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGCCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGG > NC_000913/4408953‑4409139
|
ATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGT > SRR4302535.1695641/1‑94 (MQ=60)
ATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGT > SRR4302535.1597335/1‑94 (MQ=60)
ATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGT < SRR4302535.905867/94‑1 (MQ=60)
TCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTC < SRR4302535.680545/94‑1 (MQ=60)
TCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTC < SRR4302535.2665357/94‑1 (MQ=60)
TCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTC < SRR4302535.2234300/94‑1 (MQ=60)
CTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCG > SRR4302535.2157940/1‑94 (MQ=60)
CTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGCGAGGAATTTACGGTAGTCG > SRR4302535.3301749/1‑94 (MQ=60)
TCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGC < SRR4302535.662428/94‑1 (MQ=60)
ATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGT > SRR4302535.3770883/1‑94 (MQ=60)
AGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCA > SRR4302535.3059080/1‑94 (MQ=60)
GTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAGTTTACGGTAGTCGCCGTCAG > SRR4302535.3989435/1‑94 (MQ=60)
GTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAG > SRR4302535.10365/1‑94 (MQ=60)
GTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAG < SRR4302535.1551864/94‑1 (MQ=60)
GTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAG > SRR4302535.398913/1‑94 (MQ=60)
GGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCC > SRR4302535.141868/1‑94 (MQ=60)
GCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCA > SRR4302535.3947672/1‑94 (MQ=60)
GCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCA < SRR4302535.1280999/94‑1 (MQ=60)
GCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCA > SRR4302535.3156941/1‑94 (MQ=60)
TTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACA > SRR4302535.1541956/1‑94 (MQ=60)
TTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACAT > SRR4302535.1814/1‑94 (MQ=60)
TACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATC < SRR4302535.3186386/94‑1 (MQ=60)
TACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATC < SRR4302535.2444030/94‑1 (MQ=60)
TCGCTCTACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCG < SRR4302535.56926/94‑1 (MQ=60)
ACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCG > SRR4302535.2024290/1‑94 (MQ=60)
ACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCG < SRR4302535.580441/94‑1 (MQ=60)
ACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCG < SRR4302535.1742923/94‑1 (MQ=60)
CGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGA > SRR4302535.1330696/1‑94 (MQ=60)
GCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGAT < SRR4302535.420414/94‑1 (MQ=60)
GCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGAT > SRR4302535.1819114/1‑94 (MQ=60)
CTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATC < SRR4302535.2507096/94‑1 (MQ=60)
CTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATC > SRR4302535.4566379/1‑94 (MQ=60)
TCGACACGTTAGCGTTACGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCT < SRR4302535.3214115/94‑1 (MQ=60)
CGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTG < SRR4302535.3076854/94‑1 (MQ=60)
CGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTG > SRR4302535.4486406/1‑94 (MQ=60)
ACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGG > SRR4302535.27755/1‑94 (MQ=60)
ACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCAGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGG < SRR4302535.2937955/94‑1 (MQ=60)
ACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCG > SRR4302535.3234015/1‑94 (MQ=60)
CGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGG > SRR4302535.2425172/1‑94 (MQ=60)
CGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGG < SRR4302535.3937216/94‑1 (MQ=60)
GTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGC > SRR4302535.4709906/1‑94 (MQ=60)
GTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGC < SRR4302535.4210428/94‑1 (MQ=60)
GTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGC > SRR4302535.4627922/1‑94 (MQ=60)
GTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGC < SRR4302535.1983135/94‑1 (MQ=60)
GTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGCAGTCGCCGTCAGCCACATCGATCTGGGCGGC > SRR4302535.1640479/1‑94 (MQ=60)
AGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGT > SRR4302535.299922/1‑94 (MQ=60)
AGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGT > SRR4302535.1043444/1‑94 (MQ=60)
CGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAG > SRR4302535.3951833/1‑94 (MQ=60)
CGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAG > SRR4302535.4146392/1‑94 (MQ=60)
CGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAG < SRR4302535.1178893/94‑1 (MQ=60)
GTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGT > SRR4302535.2509324/1‑94 (MQ=60)
GTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGT < SRR4302535.2235447/94‑1 (MQ=60)
GTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGGGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGT > SRR4302535.1950841/1‑94 (MQ=60)
TTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTC < SRR4302535.806964/94‑1 (MQ=60)
TTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCA < SRR4302535.4648231/94‑1 (MQ=60)
CGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGA > SRR4302535.345840/1‑94 (MQ=60)
CGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGA > SRR4302535.1904714/1‑94 (MQ=60)
GTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGTCACATCGATCTGGGCGGCGGTAGTCAGAT > SRR4302535.2527578/1‑94 (MQ=60)
GTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGAT < SRR4302535.3144020/94‑1 (MQ=60)
GTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGGGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGAT > SRR4302535.3281548/1‑94 (MQ=60)
TGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTT > SRR4302535.2411247/1‑94 (MQ=60)
CTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCC < SRR4302535.1065769/94‑1 (MQ=60)
TGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCG > SRR4302535.4381377/1‑94 (MQ=60)
TGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCG > SRR4302535.4121362/1‑94 (MQ=60)
AAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTA > SRR4302535.3522382/1‑94 (MQ=60)
AGATGAATTGCTGATTGCGCTGCCGGGGGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGCCGGTAGTCAGATTTTCCGCTAC > SRR4302535.3029399/1‑94 (MQ=60)
AATGAATTGCTGATTGCGCTGCGGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACT < SRR4302535.1338319/94‑1 (MQ=60)
ATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTA > SRR4302535.3156516/1‑94 (MQ=60)
ATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTA > SRR4302535.1843039/1‑94 (MQ=60)
TGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTAC < SRR4302535.618165/94‑1 (MQ=60)
GAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACA > SRR4302535.4324615/1‑94 (MQ=60)
GAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACA > SRR4302535.1375365/1‑94 (MQ=60)
GAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACA < SRR4302535.131531/94‑1 (MQ=60)
GAATTGCTGATTGCGCTGCCGGGTGAGAAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACA < SRR4302535.1757573/94‑1 (MQ=60)
ATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACT < SRR4302535.1510552/94‑1 (MQ=60)
ATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACT < SRR4302535.397747/94‑1 (MQ=60)
ATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACAAT > SRR4302535.2247771/1‑94 (MQ=60)
TTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTT < SRR4302535.2186163/94‑1 (MQ=60)
TGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTC > SRR4302535.675952/1‑94 (MQ=60)
GATAGCGCTGCCGGTTGAGGAATTCGCGGTAGTCGCCGTCAGCCTCATCGATCTGGGCGGCGGTAGTCAGATTTACCGCTACTACACTTCAGGC < SRR4302535.1155212/94‑1 (MQ=60)
ATTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCG < SRR4302535.1714988/94‑1 (MQ=60)
TTGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGA < SRR4302535.3174060/94‑1 (MQ=60)
TGCGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGAT < SRR4302535.3719672/94‑1 (MQ=60)
CGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGA < SRR4302535.4188229/94‑1 (MQ=60)
CGCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGA > SRR4302535.1658577/1‑94 (MQ=60)
CCTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAG < SRR4302535.1779051/94‑1 (MQ=60)
CTGCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGT < SRR4302535.3371842/94‑1 (MQ=60)
GCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTT < SRR4302535.2485525/94‑1 (MQ=60)
GCCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTT > SRR4302535.2121834/1‑94 (MQ=60)
CCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTC < SRR4302535.1791418/94‑1 (MQ=60)
CCGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTC < SRR4302535.2673723/94‑1 (MQ=60)
CGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCT > SRR4302535.3714790/1‑94 (MQ=60)
CGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCT < SRR4302535.4032947/94‑1 (MQ=60)
CGGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCT < SRR4302535.3085742/94‑1 (MQ=60)
GGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTG > SRR4302535.1906239/1‑94 (MQ=60)
GGGTGAGGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTG < SRR4302535.2006475/94‑1 (MQ=60)
AAGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAAT > SRR4302535.4453636/1‑94 (MQ=60)
GGAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATC < SRR4302535.3868113/94‑1 (MQ=60)
GAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCA < SRR4302535.3022576/94‑1 (MQ=60)
GAATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCA > SRR4302535.2653794/1‑94 (MQ=60)
AATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAA > SRR4302535.3999640/1‑94 (MQ=60)
AATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAA < SRR4302535.2885912/94‑1 (MQ=60)
ATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAAT < SRR4302535.949234/94‑1 (MQ=60)
ATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAAT < SRR4302535.2994399/94‑1 (MQ=60)
ATTTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAAT < SRR4302535.2046713/94‑1 (MQ=60)
ATTTACGGTAGTCGCCGCCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAAT < SRR4302535.573645/94‑1 (MQ=60)
TTACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATAC < SRR4302535.2292440/94‑1 (MQ=60)
TACGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACC < SRR4302535.2686653/94‑1 (MQ=60)
TACGGTAGCCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACC < SRR4302535.898159/94‑1 (MQ=60)
CGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCAC < SRR4302535.378491/94‑1 (MQ=60)
CGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCAC < SRR4302535.3491907/94‑1 (MQ=60)
CGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCAC > SRR4302535.1809947/1‑94 (MQ=60)
CGGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCAC < SRR4302535.1866373/94‑1 (MQ=60)
GGTGGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACC < SRR4302535.397677/94‑1 (MQ=60)
GGTAGTCGCCTTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACC < SRR4302535.2439263/94‑1 (MQ=60)
GGTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACC < SRR4302535.391630/94‑1 (MQ=60)
GTAGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCG > SRR4302535.4597782/1‑94 (MQ=60)
GTAGTCGCCGCCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCG < SRR4302535.1030963/94‑1 (MQ=60)
AGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGC > SRR4302535.2381312/1‑94 (MQ=60)
AGTCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGC < SRR4302535.1481574/94‑1 (MQ=60)
TCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGG < SRR4302535.3203733/94‑1 (MQ=60)
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ATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAATTGCTGATTGCGCTGCCGGGTGAGGAATTTACGGTAGCCGCCGTCAGCCACATCGATCTGGGCGGCGGTAGTCAGATTTTCCGCTACTACACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGG > NC_000913/4408953‑4409139
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
