Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,474,882 |
C→T |
T331T (ACG→ACA) |
argI ← |
ornithine carbamoyltransferase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,474,882 | 0 | C | T | 100.0%
| 698.2
/ NA
| 194 | T331T (ACG→ACA) | argI | ornithine carbamoyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (108/86); total (108/86) |
Only 100 of 200 total aligned reads displayed.
CTTTGGGTGGAAGAATAGACCTATCACTGCATAAATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGT > NC_000913/4474792‑4474971
|
agaatagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAgtgt < 2:3698694‑M2/16‑1 (MQ=255)
agaatagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAgtgt > 2:3506969‑M2/78‑93 (MQ=255)
agaatagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAgtgt > 1:1735279‑M2/78‑93 (MQ=255)
gaatagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTc > 2:3291608‑M2/77‑93 (MQ=255)
gaatagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTc > 2:2889571‑M2/77‑93 (MQ=255)
gaatagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTc < 2:236800‑M2/17‑1 (MQ=255)
gaatagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTc < 2:2510969‑M2/17‑1 (MQ=255)
atagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTcgc < 2:3470619‑M2/19‑1 (MQ=255)
atagacctatcactgcataaaataatgtgatgccgggatgggttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTcgc > 2:2760704‑M2/75‑93 (MQ=255)
tagacctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTcgcg > 2:1494802‑M2/74‑93 (MQ=255)
cctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCa < 2:976171‑M2/24‑1 (MQ=255)
ctatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCAt > 1:4642013‑M2/69‑93 (MQ=255)
tatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATc > 1:604217‑M2/68‑93 (MQ=255)
tatcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATc > 1:255188‑M2/68‑93 (MQ=255)
atcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCa > 1:222441‑M2/67‑93 (MQ=255)
atcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCa > 2:2049918‑M2/67‑93 (MQ=255)
atcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCa > 1:2142416‑M2/67‑93 (MQ=255)
atcactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCa > 2:3947317‑M2/67‑93 (MQ=255)
cactgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCAcc > 2:4380151‑M2/65‑93 (MQ=255)
actgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCg < 2:2902582‑M2/30‑1 (MQ=255)
ctgcataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGc > 2:149988‑M2/63‑93 (MQ=255)
cataaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCttt < 1:3287176‑M2/34‑1 (MQ=255)
taaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGa > 2:2704323‑M2/58‑93 (MQ=255)
taaaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGa < 1:2461741‑M2/36‑1 (MQ=255)
aaataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATa > 1:1341725‑M2/56‑93 (MQ=255)
aataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAg > 2:1000077‑M2/55‑93 (MQ=255)
ataatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGt < 1:355865‑M2/40‑1 (MQ=255)
taatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTa > 2:383237‑M2/53‑93 (MQ=255)
taatgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTa < 2:1033009‑M2/41‑1 (MQ=255)
tgtgatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGc > 1:2362944‑M2/50‑93 (MQ=255)
atgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATAc < 1:1314924‑M2/48‑1 (MQ=255)
tgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACg < 2:2392803‑M2/49‑1 (MQ=255)
cgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGtt < 2:405472‑M2/52‑1 (MQ=255)
cgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGtt < 1:4087866‑M2/52‑1 (MQ=255)
gggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGttt > 2:828979‑M2/41‑93 (MQ=255)
ggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACggttgt > 1:2303689‑M2/40‑91 (MQ=255)
ggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGtttt > 1:4439757‑M2/40‑93 (MQ=255)
gatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTc < 1:2297717‑M2/55‑1 (MQ=255)
gatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTc > 2:818167‑M2/39‑93 (MQ=255)
tggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCg > 1:2934316‑M2/37‑93 (MQ=255)
tggtttgtatttcccggcatctttatagcgatagcaATTATTTACTCAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTtccc > 1:3089602‑M2/37‑92 (MQ=255)
ggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGc > 1:4432618‑M2/36‑93 (MQ=255)
gtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGcc < 1:315790‑M2/59‑1 (MQ=255)
gtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGcc < 1:3952767‑M2/59‑1 (MQ=255)
ttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTg > 2:582382‑M2/33‑93 (MQ=255)
ttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTg > 1:3409208‑M2/33‑93 (MQ=255)
tgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGa < 1:3484472‑M2/62‑1 (MQ=255)
tgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGa < 2:4134282‑M2/62‑1 (MQ=255)
gtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGAt > 2:498846‑M2/31‑93 (MQ=255)
gtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGAt < 2:3195250‑M2/63‑1 (MQ=255)
tatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATc > 1:1977364‑M2/30‑93 (MQ=255)
tatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATc > 2:2925123‑M2/30‑93 (MQ=255)
tatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATc < 2:4497504‑M2/64‑1 (MQ=255)
tatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATc < 2:2462392‑M2/64‑1 (MQ=255)
ttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaaa > 1:2681677‑M2/27‑93 (MQ=255)
tcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaaaa < 1:3846894‑M2/68‑1 (MQ=255)
ccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaacaac > 1:4362389‑M2/24‑93 (MQ=255)
ccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAc > 2:1835263‑M2/24‑93 (MQ=255)
ccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAc > 1:3542081‑M2/24‑93 (MQ=255)
ggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACaa < 1:3935549‑M2/72‑1 (MQ=255)
gcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAAt > 1:857415‑M2/21‑93 (MQ=255)
gcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAAt > 1:1392566‑M2/21‑93 (MQ=255)
gatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATg < 1:3345716‑M2/74‑1 (MQ=255)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGc < 2:732410‑M2/75‑1 (MQ=255)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGc > 2:1673204‑M2/19‑93 (MQ=255)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGc < 1:2067089‑M2/75‑1 (MQ=255)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTACGCCTGCTCAAAAACAAtgt > 2:4337230‑M2/19‑92 (MQ=255)
tctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCt > 1:1537980‑M2/18‑93 (MQ=255)
ttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggc > 1:3490069‑M2/15‑93 (MQ=255)
ttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggc < 2:1644127‑M2/79‑1 (MQ=255)
tatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcg > 2:1967337‑M2/14‑93 (MQ=255)
atagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcgg > 1:1182866‑M2/13‑93 (MQ=255)
gcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAg > 2:3073335‑M2/10‑93 (MQ=255)
gcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAg > 1:652733‑M2/10‑93 (MQ=255)
gatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAt > 2:4438421‑M2/8‑93 (MQ=255)
gatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAt > 2:4009379‑M2/8‑93 (MQ=255)
atagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAtt > 1:1098629‑M2/7‑93 (MQ=255)
atagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAtt > 1:424899‑M2/7‑93 (MQ=255)
atagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAtt > 1:20314‑M2/7‑93 (MQ=255)
atagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAtt > 1:509442‑M2/7‑93 (MQ=255)
tagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTc < 2:2333110‑M2/88‑1 (MQ=255)
caATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGaa < 1:414853‑M2/91‑1 (MQ=255)
aATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAg > 1:1602194‑M2/2‑93 (MQ=255)
attattTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGa > 2:1882048/1‑93 (MQ=255)
ttattTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAc > 2:2612142/1‑93 (MQ=255)
ttattTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAc < 1:1049284/93‑1 (MQ=255)
tattTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGGTTCGAAGAcc > 2:3463593/1‑93 (MQ=255)
tattTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAcc < 1:2864610/93‑1 (MQ=255)
tattTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAcc > 1:3052811/1‑93 (MQ=255)
tattTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAcc > 2:342661/1‑93 (MQ=255)
attTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCt < 1:4547043/93‑1 (MQ=255)
aCTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcatt > 2:3250004/1‑92 (MQ=255)
aCTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcatc < 2:1325949/93‑1 (MQ=255)
aCTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcatc < 2:3658531/93‑1 (MQ=255)
ccgAGTGTCGCCACCATCTCCTTGTTGATAATATGCAAACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcatca < 2:3723106/91‑1 (MQ=255)
cTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcatca > 1:2348897/1‑93 (MQ=255)
tGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAg > 1:26238/1‑93 (MQ=255)
tGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAg > 2:1267402/1‑93 (MQ=255)
gAGTGTTGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGt < 1:50063/93‑1 (MQ=255)
gAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGt < 2:1774/93‑1 (MQ=255)
|
CTTTGGGTGGAAGAATAGACCTATCACTGCATAAATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGT > NC_000913/4474792‑4474971
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGAC > NC_000913/4474811‑4474974
|
CCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCAT > SRR4302535.4673479/1‑94 (MQ=18)
CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302535.256948/1‑94 (MQ=16)
CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302535.608446/1‑94 (MQ=16)
CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT > SRR4302535.3109987/1‑94 (MQ=16)
CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT < SRR4302535.1583109/94‑1 (MQ=16)
CATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTG < SRR4302535.3310029/94‑1 (MQ=21)
taAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGAT < SRR4302535.2479488/92‑1 (MQ=25)
A‑AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATA > SRR4302535.1351298/1‑94 (MQ=26)
AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG > SRR4302535.1228544/1‑94 (MQ=28)
AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT > SRR4302535.51271/1‑94 (MQ=28)
ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTA < SRR4302535.358320/94‑1 (MQ=28)
TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT > SRR4302535.2127482/1‑94 (MQ=28)
AATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATG > SRR4302535.3517061/1‑94 (MQ=30)
ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC < SRR4302535.2319897/94‑1 (MQ=32)
ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC > SRR4302535.2379915/1‑94 (MQ=32)
ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTCGATAGTATGC > SRR4302535.4602569/1‑94 (MQ=23)
GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302535.4394344/94‑1 (MQ=36)
gatgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATAC < SRR4302535.1175495/48‑1 (MQ=60)
atgccgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACG < SRR4302535.1324317/49‑1 (MQ=60)
cgggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTT < SRR4302535.4115838/53‑1 (MQ=60)
gggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTT > SRR4302535.4470191/41‑94 (MQ=60)
gggatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTGT > SRR4302535.2320168/41‑94 (MQ=60)
gatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCC < SRR4302535.1998957/56‑1 (MQ=60)
gatggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCC < SRR4302535.2314160/56‑1 (MQ=60)
atggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCG > SRR4302535.2954967/38‑94 (MQ=60)
atggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCG > SRR4302535.4250505/38‑94 (MQ=60)
atggtttgtatttcccggcatctttatagcgatagcaATTATTTACTCAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCC > SRR4302535.3111120/38‑94 (MQ=60)
tggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGC > SRR4302535.4462991/37‑94 (MQ=60)
ggtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCC > SRR4302535.2372912/36‑94 (MQ=60)
gtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCT < SRR4302535.2275097/60‑1 (MQ=60)
gtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCT > SRR4302535.2320926/35‑94 (MQ=60)
gtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCT < SRR4302535.317979/60‑1 (MQ=60)
gtttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCT < SRR4302535.3979753/60‑1 (MQ=60)
tttgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTG > SRR4302535.3432934/34‑94 (MQ=60)
tgtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGAT < SRR4302535.3508665/63‑1 (MQ=60)
gtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATC > SRR4302535.4012768/31‑94 (MQ=60)
gtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATC < SRR4302535.2062741/64‑1 (MQ=60)
gtatttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATC > SRR4302535.1991607/31‑94 (MQ=60)
tttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAA > SRR4302535.2700861/28‑94 (MQ=60)
tttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAA < SRR4302535.3796168/67‑1 (MQ=60)
ttcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAA < SRR4302535.3934893/68‑1 (MQ=60)
tcccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAA < SRR4302535.3873378/69‑1 (MQ=60)
cccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAACAAC > SRR4302535.4392241/25‑94 (MQ=60)
cccggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAC > SRR4302535.3566691/25‑94 (MQ=60)
ggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAAT > SRR4302535.863458/22‑94 (MQ=60)
ggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAAT > SRR4302535.1402508/22‑94 (MQ=60)
ggcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAAT < SRR4302535.3962400/73‑1 (MQ=60)
gcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATG < SRR4302535.4165944/74‑1 (MQ=60)
gcatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATG < SRR4302535.1369373/74‑1 (MQ=60)
gatctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGC < SRR4302535.3369021/75‑1 (MQ=60)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATTACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCT > SRR4302535.2531797/19‑94 (MQ=60)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCT < SRR4302535.3509197/76‑1 (MQ=60)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCT > SRR4302535.3975430/19‑94 (MQ=60)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCT < SRR4302535.3484286/76‑1 (MQ=60)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCT > SRR4302535.1549062/19‑94 (MQ=60)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCT < SRR4302535.2081991/76‑1 (MQ=60)
atctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCT > SRR4302535.2850752/19‑94 (MQ=60)
ctttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGG > SRR4302535.618258/17‑94 (MQ=60)
tttatagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGC > SRR4302535.3514319/16‑94 (MQ=60)
TATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGG > SRR4302535.1191314/1‑94 (MQ=60)
atagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCTGCCTGATCAAAAACAATGCTGGCGGC > SRR4302535.2904082/13‑94 (MQ=60)
atagcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGC < SRR4302535.3199252/82‑1 (MQ=60)
agcgatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAG > SRR4302535.657285/11‑94 (MQ=60)
gatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATT > SRR4302535.1106451/8‑94 (MQ=60)
gatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATT > SRR4302535.513004/8‑94 (MQ=60)
gatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATT > SRR4302535.427865/8‑94 (MQ=60)
gatagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATT > SRR4302535.20465/8‑94 (MQ=60)
atagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC < SRR4302535.892956/88‑1 (MQ=60)
atagcaATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC > SRR4302535.1435295/7‑94 (MQ=60)
caATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAG < SRR4302535.417765/92‑1 (MQ=60)
caATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAG > SRR4302535.1613754/3‑94 (MQ=60)
AATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGA > SRR4302535.471415/1‑94 (MQ=60)
ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAC > SRR4302535.2165891/1‑94 (MQ=60)
ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAC < SRR4302535.1613864/94‑1 (MQ=60)
ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAC < SRR4302535.448820/94‑1 (MQ=60)
ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAC > SRR4302535.2665410/1‑94 (MQ=60)
ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAC > SRR4302535.110228/1‑94 (MQ=60)
TTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACC > SRR4302535.3074189/1‑94 (MQ=60)
TTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACC < SRR4302535.1056748/94‑1 (MQ=60)
TATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCT < SRR4302535.2884904/94‑1 (MQ=60)
ATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTC < SRR4302535.4578133/94‑1 (MQ=60)
TTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCA < SRR4302535.4291461/94‑1 (MQ=60)
TTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCA < SRR4302535.1328462/94‑1 (MQ=60)
ACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCA > SRR4302535.603368/1‑94 (MQ=60)
ACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCA > SRR4302535.2365740/1‑94 (MQ=60)
ACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCA < SRR4302535.3151806/94‑1 (MQ=60)
CTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAG < SRR4302535.3578745/94‑1 (MQ=60)
CTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAG > SRR4302535.26443/1‑94 (MQ=60)
CTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAG < SRR4302535.3356778/94‑1 (MQ=60)
CTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAG < SRR4302535.3484633/94‑1 (MQ=60)
GAGTGTTGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTG < SRR4302535.50434/94‑1 (MQ=60)
GTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGAC < SRR4302535.4677993/94‑1 (MQ=60)
GTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGAC > SRR4302535.279038/1‑94 (MQ=60)
GTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGAC < SRR4302535.67745/94‑1 (MQ=60)
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CCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGAC > NC_000913/4474811‑4474974
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
