Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,484,261	T→C	L159P (CTG→CCG)	yjgP →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,484,261	0	T	C	100.0%	684.7 / NA	214	L159P (CTG→CCG)	yjgP	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (84/130); total (84/130)

Only 100 of 226 total aligned reads displayed.

ATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGG  >  NC_000913/4484171‑4484350

aTGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGt                                                                                         >  2:365876/1‑93 (MQ=255)

aTGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGt                                                                                         <  2:3765848/93‑1 (MQ=255)

aTGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACAAATGGCAGCTCGGTGCCGt                                                                                         <  2:4554113/93‑1 (MQ=255)

 tGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGtt                                                                                        >  1:4617521/1‑93 (MQ=255)

    aGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCAt                                                                                     >  2:3468976/1‑93 (MQ=255)

    aGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCAt                                                                                     <  1:2109546/93‑1 (MQ=255)

    aGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCAt                                                                                     <  2:580427/93‑1 (MQ=255)

     gtgtTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATc                                                                                    >  2:4276907/1‑93 (MQ=255)

     gtattAGCAGAAGCGAAAGCGAACCCTGGCATGACAGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTACCGTGCATc                                                                                    <  2:741616/90‑1 (MQ=255)

      tgtTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGGTCGGTGCCGTTCATCg                                                                                   >  1:552513/1‑93 (MQ=255)

      tgtTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCg                                                                                   <  1:687516/93‑1 (MQ=255)

       gtTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATTGCAGCTCGGTGCCGTTTATCGa                                                                                  >  2:2555777/1‑93 (MQ=255)

        ttAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCgca                                                                                 >  1:1720636/1‑91 (MQ=255)

        ttAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGaa                                                                                 <  2:3283561/93‑1 (MQ=255)

          aGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAg                                                                               <  2:3341972/93‑1 (MQ=255)

          aGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAg                                                                               <  2:192215/93‑1 (MQ=255)

          aGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAg                                                                               <  1:4164571/93‑1 (MQ=255)

             aGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGt                                                                            <  1:2884565/93‑1 (MQ=255)

             aGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGt                                                                            <  1:1479286/93‑1 (MQ=255)

              gAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGtt                                                                           <  1:1634145/93‑1 (MQ=255)

                agcgaaagcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGa                                                                         >  1:4325133/1‑93 (MQ=255)

                 gcgaaagcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGAc                                                                        <  1:2248399/93‑1 (MQ=255)

                    aaagcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGc                                                                     <  2:1678824/93‑1 (MQ=255)

                    aaagcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGc                                                                     <  1:4073003/93‑1 (MQ=255)

                     aagcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCa                                                                    >  2:2340669/1‑93 (MQ=255)

                     aagcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCa                                                                    <  1:3194442/93‑1 (MQ=255)

                      agcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAg                                                                   <  1:2374017/93‑1 (MQ=255)

                       gcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGc                                                                  <  2:2875931/93‑1 (MQ=255)

                       gcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGc                                                                  >  1:904965/1‑93 (MQ=255)

                       gcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGc                                                                  <  2:2079349/93‑1 (MQ=255)

                       gcgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCCGTGCCGTTCATCGAAAGCGTTGACGGCAGc                                                                  >  2:4573118/1‑93 (MQ=255)

                        cgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCg                                                                 <  2:555798/93‑1 (MQ=255)

                        cgaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCg                                                                 <  1:1070808/93‑1 (MQ=255)

                         gaaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGa                                                                <  2:4624562/93‑1 (MQ=255)

                          aaCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGAt                                                               <  1:499018/93‑1 (MQ=255)

                           aCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGAtt                                                              >  2:1384351/1‑93 (MQ=255)

                           aCCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGAtt                                                              >  1:4274707/1‑93 (MQ=255)

                            cccTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGAttt                                                             >  1:3582635/1‑93 (MQ=255)

                             ccTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTc                                                            <  1:3876251/93‑1 (MQ=255)

                             ccTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTc                                                            >  1:4363316/1‑93 (MQ=255)

                              cTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCa                                                           >  1:1417135/1‑93 (MQ=255)

                              cTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCa                                                           >  2:47994/1‑93 (MQ=255)

                                ggCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCaaa                                                         <  2:897018/93‑1 (MQ=255)

                                  gaTGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGa                                                       <  2:3084054/92‑1 (MQ=255)

                                  cATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGa                                                       <  2:1574937/93‑1 (MQ=255)

                                  cATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCGCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGa                                                       <  1:3399103/93‑1 (MQ=255)

                                   aTGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGCAAGCGTTGACGGCAGCGATTTCAAAGAt                                                      >  1:2628771/1‑93 (MQ=255)

                                    tGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAtg                                                     >  1:1890074/1‑93 (MQ=255)

                                    tGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAtg                                                     >  2:1531943/1‑93 (MQ=255)

                                     ggcggcGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAtgt                                                    <  1:149961/93‑1 (MQ=255)

                                      gcggcgCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAtgtg                                                   >  1:4232767/1‑93 (MQ=255)

                                      gcggcgCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAtgtg                                                   <  1:1247431/93‑1 (MQ=255)

                                      gcggcgCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAtgtg                                                   <  2:1239244/93‑1 (MQ=255)

                                       cggcgCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATgtgt                                                  <  2:2458923/93‑1 (MQ=255)

                                       cggcgCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATgtgt                                                  <  2:4096592/93‑1 (MQ=255)

                                       cggcgCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATgtgt                                                  >  2:2730915/1‑93 (MQ=255)

                                           gcTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCt                                              <  1:627923/93‑1 (MQ=255)

                                                 gcAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCa                                        >  2:2636432/1‑93 (MQ=255)

                                                   aaGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCaaa                                      >  2:1803668/1‑93 (MQ=255)

                                                    aGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCACCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCCAAt                                     >  2:3974945/1‑93 (MQ=255)

                                                     gggCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAAtt                                    <  2:110925/93‑1 (MQ=255)

                                                     gggCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAAtt                                    >  2:831107/1‑93 (MQ=255)

                                                     gggCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAAtt                                    <  2:1021320/93‑1 (MQ=255)

                                                     gggCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAAtt                                    <  1:3087764/93‑1 (MQ=255)

                                                      ggCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTc                                   <  1:2735823/93‑1 (MQ=255)

                                                      ggCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTc                                   >  2:3831128/1‑93 (MQ=255)

                                                          aTTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTTCTCGCGCAAATTCGAcc                               >  2:139435/1‑93 (MQ=255)

                                                          aTTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGAcc                               >  1:3980086/1‑93 (MQ=255)

                                                           ttCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCa                              >  2:846912/1‑93 (MQ=255)

                                                              cAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCaaaa                           <  1:1024121/93‑1 (MQ=255)

                                                               aGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGCTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAg                          >  1:2516551/1‑93 (MQ=255)

                                                                 cAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGt                        >  2:2826834/1‑93 (MQ=255)

                                                                   aGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTaa                      <  1:1768404/93‑1 (MQ=255)

                                                                   aGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTaa                      <  1:4574431/93‑1 (MQ=255)

                                                                   aGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTaa                      <  1:3380376/93‑1 (MQ=255)

                                                                    gCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAAt                     <  1:3782610/93‑1 (MQ=255)

                                                                      gACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATga                   >  1:937869/1‑92 (MQ=255)

                                                                      gACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGc                   <  1:1581960/93‑1 (MQ=255)

                                                                      gACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGc                   <  1:2152710/93‑1 (MQ=255)

                                                                       aCTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCa                  <  2:1725027/93‑1 (MQ=255)

                                                                       aCTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCa                  <  2:3576685/93‑1 (MQ=255)

                                                                       aCTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCa                  <  1:4333204/93‑1 (MQ=255)

                                                                           aTGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTc              <  2:3780239/93‑1 (MQ=255)

                                                                            tGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTcc             <  2:2131296/93‑1 (MQ=255)

                                                                             ggCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCATGTCCt            <  2:3053935/93‑1 (MQ=255)

                                                                             ggCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCt            <  1:1006944/93‑1 (MQ=255)

                                                                              gCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCtt           >  1:2500670/1‑93 (MQ=255)

                                                                               cAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCTCAAATTCGACCAAAAGGTAATGCACGTCCTTc          <  2:1504920/93‑1 (MQ=255)

                                                                               cAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTc          <  1:3418195/93‑1 (MQ=255)

                                                                                 gCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCtg        >  1:1833361/1‑93 (MQ=255)

                                                                                  cTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCtgt       >  1:2896248/1‑93 (MQ=255)

                                                                                  cTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCtgt       <  1:1904756/93‑1 (MQ=255)

                                                                                   tCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCtgtg      >  2:2946592/1‑93 (MQ=255)

                                                                                    cGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGCTTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTgtgg     >  1:2546100/1‑93 (MQ=255)

                                                                                    cGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTgtgg     >  2:3125240/1‑93 (MQ=255)

                                                                                     ggTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTgtggt    <  2:4426216/93‑1 (MQ=255)

                                                                                     ggTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTgtggt    <  1:976731/93‑1 (MQ=255)

                                                                                      gTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTgtggtg   >  2:4218408/1‑93 (MQ=255)

                                                                                       tGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTgtggtgg  <  1:2752166/93‑1 (MQ=255)

                                                                                       tGCCGTTCATCGAAAGCGTTGAAGGCAGCGATTTCAAAGATGTGTTCCTAGCGCAAATTTGACCAAAAGGTAATGCACGTCCCTCTgtggtgg  >  2:1894921/1‑93 (MQ=255)

ATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGG  >  NC_000913/4484171‑4484350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGT  >  NC_000913/4484171‑4484351

ATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTT                                                                                         >  SRR4302535.1796094/1‑94 (MQ=60)

ATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTT                                                                                         >  SRR4302535.4648902/1‑94 (MQ=60)

 TGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTC                                                                                        >  SRR4302535.659904/1‑94 (MQ=60)

    AGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATC                                                                                     <  SRR4302535.2124760/94‑1 (MQ=60)

     GTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGGTCGGTGCCGTTCATCG                                                                                    >  SRR4302535.556382/1‑94 (MQ=60)

     GTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCG                                                                                    >  SRR4302535.1517145/1‑94 (MQ=60)

      TGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGA                                                                                   <  SRR4302535.692331/94‑1 (MQ=60)

      TGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGA                                                                                   <  SRR4302535.4643785/94‑1 (MQ=60)

       GTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGCA                                                                                  >  SRR4302535.1733082/1‑94 (MQ=60)

          AGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGC                                                                               <  SRR4302535.4193088/94‑1 (MQ=60)

          AGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGC                                                                               <  SRR4302535.1594159/94‑1 (MQ=60)

             AGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTT                                                                            <  SRR4302535.1489870/94‑1 (MQ=60)

             AGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTT                                                                            <  SRR4302535.1489871/94‑1 (MQ=60)

             AGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTT                                                                            <  SRR4302535.2904975/94‑1 (MQ=60)

              GAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCTAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTA                                                                           >  SRR4302535.2032773/1‑94 (MQ=60)

              GAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTG                                                                           <  SRR4302535.1277037/94‑1 (MQ=60)

              GAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTG                                                                           <  SRR4302535.3764125/94‑1 (MQ=60)

              GAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTG                                                                           <  SRR4302535.1645953/94‑1 (MQ=60)

               AAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGA                                                                          >  SRR4302535.4354712/1‑94 (MQ=60)

                AGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGAC                                                                         <  SRR4302535.1768743/94‑1 (MQ=60)

                 GCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACG                                                                        <  SRR4302535.2264405/94‑1 (MQ=60)

                   GAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGC                                                                      >  SRR4302535.4578821/1‑94 (MQ=60)

                   GAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGC                                                                      >  SRR4302535.979982/1‑94 (MQ=60)

                   GAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGC                                                                      <  SRR4302535.3201683/94‑1 (MQ=60)

                    AAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCA                                                                     <  SRR4302535.4100874/94‑1 (MQ=60)

                    AAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCA                                                                     <  SRR4302535.2528438/94‑1 (MQ=60)

                     AAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAG                                                                    <  SRR4302535.3216542/94‑1 (MQ=60)

                      AGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGC                                                                   <  SRR4302535.865044/94‑1 (MQ=60)

                      AGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGC                                                                   >  SRR4302535.911387/1‑94 (MQ=60)

                      AGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGC                                                                   <  SRR4302535.1325216/94‑1 (MQ=60)

                      AGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGC                                                                   <  SRR4302535.2391070/94‑1 (MQ=60)

                       GCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCG                                                                  <  SRR4302535.2671545/94‑1 (MQ=60)

                        CGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGA                                                                 <  SRR4302535.1078420/94‑1 (MQ=60)

                          AACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATT                                                               <  SRR4302535.502518/94‑1 (MQ=60)

                          AACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATT                                                               <  SRR4302535.101578/94‑1 (MQ=60)

                          AACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATT                                                               >  SRR4302535.4303967/1‑94 (MQ=60)

                           ACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTT                                                              >  SRR4302535.3607485/1‑94 (MQ=60)

                           ACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTT                                                              <  SRR4302535.4013834/94‑1 (MQ=60)

                            CCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTC                                                             >  SRR4302535.491263/1‑94 (MQ=60)

                            CCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTC                                                             >  SRR4302535.4393177/1‑94 (MQ=60)

                             CCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCA                                                            >  SRR4302535.1427253/1‑94 (MQ=60)

                             CCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCA                                                            <  SRR4302535.3902876/94‑1 (MQ=60)

                                 GCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCATTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGA                                                        >  SRR4302535.967266/1‑94 (MQ=60)

                                  CATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGCAAGCGTTGACGGCAGCGATTTCAAAGAT                                                       >  SRR4302535.2647608/1‑94 (MQ=60)

                                  CATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAT                                                       <  SRR4302535.10040/94‑1 (MQ=60)

                                  CATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAT                                                       >  SRR4302535.3434596/1‑94 (MQ=60)

                                  CATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCGCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAT                                                       <  SRR4302535.3422755/94‑1 (MQ=60)

                                   ATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATG                                                      >  SRR4302535.632331/1‑94 (MQ=60)

                                   ATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATG                                                      >  SRR4302535.1903687/1‑94 (MQ=60)

                                    TGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGT                                                     <  SRR4302535.2550534/94‑1 (MQ=60)

                                     GGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTG                                                    >  SRR4302535.4261733/1‑94 (MQ=60)

                                     GGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTG                                                    <  SRR4302535.599424/94‑1 (MQ=60)

                                     GGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTG                                                    <  SRR4302535.151006/94‑1 (MQ=60)

                                      GCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGT                                                   <  SRR4302535.1256331/94‑1 (MQ=60)

                                       CGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTT                                                  <  SRR4302535.2385217/94‑1 (MQ=60)

                                       CGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTT                                                  <  SRR4302535.1886342/94‑1 (MQ=60)

                                         GCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCC                                                <  SRR4302535.2764910/94‑1 (MQ=60)

                                         GCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTAGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCC                                                >  SRR4302535.2537223/1‑94 (MQ=60)

                                          CGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCCAAGATGTGTTCCT                                               >  SRR4302535.165088/1‑94 (MQ=60)

                                           GCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTC                                              >  SRR4302535.2874538/1‑94 (MQ=60)

                                           GCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTC                                              <  SRR4302535.632297/94‑1 (MQ=60)

                                               GCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGC                                          >  SRR4302535.4139769/1‑94 (MQ=60)

                                                 GCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAA                                        >  SRR4302535.2411639/1‑94 (MQ=60)

                                                   AAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAAT                                      >  SRR4302535.1501883/1‑94 (MQ=60)

                                                   AACGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAAT                                      <  SRR4302535.914579/94‑1 (MQ=60)

                                                    AGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATT                                     <  SRR4302535.3002739/94‑1 (MQ=60)

                                                     GGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTC                                    <  SRR4302535.3109270/94‑1 (MQ=60)

                                                      GGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCG                                   <  SRR4302535.2755342/94‑1 (MQ=60)

                                                      GGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCG                                   <  SRR4302535.3819185/94‑1 (MQ=60)

                                                        CAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGAC                                 <  SRR4302535.1107768/94‑1 (MQ=60)

                                                        CAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGAC                                 >  SRR4302535.2180050/1‑94 (MQ=60)

                                                         AATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACC                                >  SRR4302535.3417066/1‑94 (MQ=60)

                                                         AATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACC                                >  SRR4302535.4007280/1‑94 (MQ=60)

                                                          ATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCA                               >  SRR4302535.4343056/1‑94 (MQ=60)

                                                          ATTCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCA                               >  SRR4302535.1631140/1‑94 (MQ=60)

                                                            TCCAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAACTTCGACCAAA                             >  SRR4302535.3589740/1‑94 (MQ=60)

                                                              CAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAG                           <  SRR4302535.1031399/94‑1 (MQ=60)

                                                              CAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAG                           <  SRR4302535.463999/94‑1 (MQ=60)

                                                              CAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAG                           <  SRR4302535.1867617/94‑1 (MQ=60)

                                                              CAGCAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGCTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAG                           >  SRR4302535.2534689/1‑94 (MQ=60)

                                                                 CAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTA                        >  SRR4302535.105505/1‑94 (MQ=60)

                                                                 CAAGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTA                        >  SRR4302535.4292757/1‑94 (MQ=60)

                                                                   AGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAAT                      <  SRR4302535.4605610/94‑1 (MQ=60)

                                                                   AGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAAT                      <  SRR4302535.1781225/94‑1 (MQ=60)

                                                                   AGCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAAT                      <  SRR4302535.3403878/94‑1 (MQ=60)

                                                                    GCGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATG                     <  SRR4302535.3808709/94‑1 (MQ=60)

                                                                     CGACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGA                    >  SRR4302535.944512/1‑94 (MQ=60)

                                                                      GACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCA                   <  SRR4302535.2168185/94‑1 (MQ=60)

                                                                      GACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCA                   <  SRR4302535.1593380/94‑1 (MQ=60)

                                                                       ACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCAC                  <  SRR4302535.279536/94‑1 (MQ=60)

                                                                       ACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCAC                  <  SRR4302535.4362839/94‑1 (MQ=60)

                                                                       ACTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCAC                  >  SRR4302535.438241/1‑94 (MQ=60)

                                                                        CTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACG                 >  SRR4302535.4255592/1‑94 (MQ=60)

                                                                        CTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACG                 <  SRR4302535.4339394/94‑1 (MQ=60)

                                                                        CTAATGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACG                 >  SRR4302535.2910107/1‑94 (MQ=60)

                                                                            TGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCT             <  SRR4302535.3963841/94‑1 (MQ=60)

                                                                            TGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCT             <  SRR4302535.3471180/94‑1 (MQ=60)

                                                                            TGGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCT             <  SRR4302535.3184747/94‑1 (MQ=60)

                                                                             GGCAGCTCGTTGGCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTT            <  SRR4302535.3381030/94‑1 (MQ=60)

                                                                             GGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTT            <  SRR4302535.1014101/94‑1 (MQ=60)

                                                                             GGCAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTT            >  SRR4302535.2518703/1‑94 (MQ=60)

                                                                               CAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCT          <  SRR4302535.1917905/94‑1 (MQ=60)

                                                                               CAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCT          <  SRR4302535.4361123/94‑1 (MQ=60)

                                                                               CAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCT          <  SRR4302535.262820/94‑1 (MQ=60)

                                                                               CAGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCT          <  SRR4302535.3441973/94‑1 (MQ=60)

                                                                                AGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTG         >  SRR4302535.1846590/1‑94 (MQ=60)

                                                                                AGCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTG         >  SRR4302535.2152934/1‑94 (MQ=60)

                                                                                 GCTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGT        >  SRR4302535.2916729/1‑94 (MQ=60)

                                                                                  CTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTG       >  SRR4302535.2208533/1‑94 (MQ=60)

                                                                                  CTCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTG       <  SRR4302535.1918466/94‑1 (MQ=60)

                                                                                   TCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGCTTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGG      >  SRR4302535.2564426/1‑94 (MQ=60)

                                                                                   TCGGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGG      >  SRR4302535.4095857/1‑94 (MQ=60)

                                                                                     GGTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTG    <  SRR4302535.983664/94‑1 (MQ=60)

                                                                                      GTGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGG   <  SRR4302535.520959/94‑1 (MQ=60)

                                                                                       TGCCGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGT  <  SRR4302535.2771781/94‑1 (MQ=60)

ATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGT  >  NC_000913/4484171‑4484351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`