Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,562,600 |
T→C |
T274A (ACC→GCC) |
yjiM ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,562,600 | 0 | T | C | 100.0%
| 605.1
/ NA
| 195 | T274A (ACC→GCC) | yjiM | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (115/80); total (115/80) |
Only 100 of 206 total aligned reads displayed.
AGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGA > NC_000913/4562510‑4562689
|
aGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGgcgc > 2:2485334/1‑93 (MQ=255)
ggAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCa > 1:1371993/1‑93 (MQ=255)
agcagcCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGt < 1:1741912/93‑1 (MQ=255)
agcagcCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGt < 1:1761022/93‑1 (MQ=255)
gcagcCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGtt < 1:2522132/93‑1 (MQ=255)
cagcCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGttt < 1:2792642/93‑1 (MQ=255)
cagcCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGttt < 1:2401348/93‑1 (MQ=255)
gcCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTc < 1:3380101/93‑1 (MQ=255)
cAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCAt > 2:1278305/1‑93 (MQ=255)
aaTCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATa > 1:3004195/1‑93 (MQ=255)
aTCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATaa > 1:1167483/1‑93 (MQ=255)
aTCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATaa < 2:2549422/93‑1 (MQ=255)
tCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAAc < 1:2228995/93‑1 (MQ=255)
tCGCCAGATATTTAGCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAAc < 2:1856295/93‑1 (MQ=255)
gCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCg > 1:1567798/1‑93 (MQ=255)
ccAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGa < 2:1478722/93‑1 (MQ=255)
ccAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGa < 1:2932165/93‑1 (MQ=255)
cAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAc < 1:3438756/93‑1 (MQ=255)
cAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAc < 1:3416841/93‑1 (MQ=255)
cAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAc < 1:3975806/93‑1 (MQ=255)
cAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAc > 1:991616/1‑93 (MQ=255)
cAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGCTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAc > 1:3715665/1‑93 (MQ=255)
aGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACa > 1:3107112/1‑93 (MQ=255)
aGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACa < 1:4569905/93‑1 (MQ=255)
gATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACaa > 1:2633808/1‑93 (MQ=255)
gATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACaa > 2:2748523/1‑93 (MQ=255)
gATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACaa > 2:175928/1‑93 (MQ=255)
gATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACaa > 2:3417684/1‑93 (MQ=255)
atatTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAAc < 2:646370/93‑1 (MQ=255)
atatTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAAc > 1:60706/1‑93 (MQ=255)
tatTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAAcc > 1:827168/1‑93 (MQ=255)
tatTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAAcc > 2:52450/1‑93 (MQ=255)
tatTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGAAGTTTTCATAACCGACAAcc > 1:2189324/1‑93 (MQ=255)
atTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAAccc > 1:4012847/1‑93 (MQ=255)
tttATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCa < 1:652156/93‑1 (MQ=255)
tttATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCa < 2:2002697/93‑1 (MQ=255)
tttATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCa > 1:3801839/1‑93 (MQ=255)
tttATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCa > 1:2177543/1‑93 (MQ=255)
gCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCa < 1:3553241/93‑1 (MQ=255)
aGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATtc < 1:2027321/93‑1 (MQ=255)
aGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATtc > 1:191633/1‑93 (MQ=255)
aGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATtc > 1:4596019/1‑93 (MQ=255)
gcgcGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATtct < 1:446545/93‑1 (MQ=255)
ctcgtcgtAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATtctc < 2:406313/91‑1 (MQ=255)
gcgTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTctct > 2:3622451/1‑93 (MQ=255)
gtcgtAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTc > 1:2553679/1‑93 (MQ=255)
gtcgtAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTc > 1:2740821/1‑93 (MQ=255)
gtcgcAGACGTCGCCCCTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGCCGCAGTTTTCACAACCGACAGCCCAGCCGCCATTCTCTTc < 2:3159540/93‑1 (MQ=255)
tcgtAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCa > 2:1933815/1‑93 (MQ=255)
cgtAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCaa < 1:2144565/93‑1 (MQ=255)
gtAGACATCGCCCGTTTCTGCCCCGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAAt < 1:4189797/93‑1 (MQ=255)
gtAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAAt > 1:4623425/1‑93 (MQ=255)
gtAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAAt > 2:1074116/1‑93 (MQ=255)
tAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATc > 1:3101495/1‑93 (MQ=255)
tAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATc > 2:2154188/1‑93 (MQ=255)
tAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATc > 2:4505803/1‑93 (MQ=255)
tAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATc > 1:3318759/1‑93 (MQ=255)
aGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGCCAACCCAGCCGCCATTCTATTCAATcg > 2:747474/1‑93 (MQ=255)
aGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATcg > 1:2438893/1‑93 (MQ=255)
aGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATcg > 2:3694234/1‑93 (MQ=255)
cATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATcgcgc < 1:3215245/93‑1 (MQ=255)
aTCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCCTCAATcgcgcg > 2:869847/1‑93 (MQ=255)
cccGTTTCTGCCCCGCATTGCTCGGTGGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcacc < 2:4210309/93‑1 (MQ=255)
cccGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcacc > 1:1307656/1‑93 (MQ=255)
cccGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcacc > 1:975225/1‑93 (MQ=255)
cccGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcacc > 1:3618999/1‑93 (MQ=255)
ccGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcacca > 2:9214/1‑93 (MQ=255)
ccGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcacca < 1:1243471/93‑1 (MQ=255)
cGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcaccac > 2:2312351/1‑93 (MQ=255)
cGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGcaccac > 2:2416854/1‑93 (MQ=255)
gTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAGAACCAAGCCGCCATTCTCTTCAATCGCGCGCACCACt > 2:3358131/1‑93 (MQ=255)
tttCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACACCCCAGCCGCCATTCTCTTCAATCGCGCGCACCACtt < 2:1357910/93‑1 (MQ=255)
tttCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACtt > 2:1599611/1‑93 (MQ=255)
tGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTc > 2:2924336/1‑93 (MQ=255)
ccACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTctg < 1:2485159/93‑1 (MQ=255)
cACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTctgc > 2:2279095/1‑93 (MQ=255)
cACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTctgc > 1:3247325/1‑93 (MQ=255)
cACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTctgc < 2:1778136/93‑1 (MQ=255)
aCGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTctgct > 1:3472260/1‑93 (MQ=255)
aCGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTctgct > 2:388985/1‑93 (MQ=255)
cATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTgcg < 1:492955/93‑1 (MQ=255)
ttGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGcgcc > 1:1019182/1‑93 (MQ=255)
ttGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGcgcc < 1:1516120/93‑1 (MQ=255)
gCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGctccgc < 2:4640159/93‑1 (MQ=255)
gCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGcgccgc > 1:2270347/1‑93 (MQ=255)
cTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCgccgcc > 2:4011973/1‑93 (MQ=255)
cGGCCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACACCCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCaa < 2:4088832/93‑1 (MQ=255)
gTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATc > 2:3843309/1‑93 (MQ=255)
gTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATACTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATc < 1:1891987/93‑1 (MQ=255)
cGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCgg < 2:724854/93‑1 (MQ=255)
cGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCgg > 1:3087720/1‑93 (MQ=255)
ccTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCggg < 2:1578928/92‑1 (MQ=255)
ttCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAg < 2:4522851/93‑1 (MQ=255)
tCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGc < 2:4306366/93‑1 (MQ=255)
gCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCg > 2:2816065/1‑93 (MQ=255)
gCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCg > 1:362864/1‑93 (MQ=255)
cccGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGt > 2:3256973/1‑93 (MQ=255)
cccGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGt > 2:3150121/1‑93 (MQ=255)
ccGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTg > 2:2795783/1‑93 (MQ=255)
cGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGa < 1:4408242/93‑1 (MQ=255)
|
AGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGA > NC_000913/4562510‑4562689
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACAGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAA > NC_000913/4562507‑4562693
|
CACAGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGC < SRR4302535.4431457/94‑1 (MQ=60)
AGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCA < SRR4302535.744354/94‑1 (MQ=60)
AGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCA > SRR4302535.1381795/1‑94 (MQ=60)
AGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTT > SRR4302535.3585950/1‑94 (MQ=60)
AGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTT < SRR4302535.1773776/94‑1 (MQ=60)
AGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTT < SRR4302535.1754503/94‑1 (MQ=60)
GCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTT < SRR4302535.3826488/94‑1 (MQ=60)
GCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTT < SRR4302535.2540307/94‑1 (MQ=60)
CAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTT < SRR4302535.2418622/94‑1 (MQ=60)
CAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTT < SRR4302535.2812514/94‑1 (MQ=60)
CAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTT > SRR4302535.3488708/1‑94 (MQ=60)
AGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTC < SRR4302535.4509341/94‑1 (MQ=60)
GCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCGACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCA > SRR4302535.1910443/1‑94 (MQ=60)
GCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCA < SRR4302535.3403602/94‑1 (MQ=60)
CCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCAT > SRR4302535.3412761/1‑94 (MQ=60)
CAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATA > SRR4302535.2117213/1‑94 (MQ=60)
CAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATA > SRR4302535.3025253/1‑94 (MQ=60)
AATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAA > SRR4302535.1175817/1‑94 (MQ=60)
ATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAAC > SRR4302535.472730/1‑94 (MQ=60)
TCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACC < SRR4302535.2244847/94‑1 (MQ=60)
CGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCG > SRR4302535.1579110/1‑94 (MQ=60)
CGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCG > SRR4302535.3435216/1‑94 (MQ=60)
GCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGA > SRR4302535.2328973/1‑94 (MQ=60)
GCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGA < SRR4302535.2495059/94‑1 (MQ=60)
CCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAC < SRR4302535.2952809/94‑1 (MQ=60)
CCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAC > SRR4302535.998655/1‑94 (MQ=60)
CCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGCTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGAC > SRR4302535.3741406/1‑94 (MQ=60)
CAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACA < SRR4302535.4002966/94‑1 (MQ=60)
CAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACA > SRR4302535.3128746/1‑94 (MQ=60)
CAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACA < SRR4302535.3440610/94‑1 (MQ=60)
CAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACA < SRR4302535.3462674/94‑1 (MQ=60)
AGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAA < SRR4302535.4601067/94‑1 (MQ=60)
AGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAA > SRR4302535.2652683/1‑94 (MQ=60)
GATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAAC > SRR4302535.61158/1‑94 (MQ=60)
ATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACC < SRR4302535.3094634/94‑1 (MQ=60)
ATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACC > SRR4302535.832958/1‑94 (MQ=60)
ATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGAAGTTTTCATAACCGACAACC > SRR4302535.2204914/1‑94 (MQ=60)
TATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCC > SRR4302535.4040298/1‑94 (MQ=60)
ATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCA > SRR4302535.2193099/1‑94 (MQ=60)
ATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCA > SRR4302535.3828045/1‑94 (MQ=60)
TTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAG < SRR4302535.1765603/94‑1 (MQ=60)
TTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAG < SRR4302535.656704/94‑1 (MQ=60)
ATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCG > SRR4302535.3681572/1‑94 (MQ=60)
CGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCA > SRR4302535.4038221/1‑94 (MQ=60)
GCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCAT > SRR4302535.2380172/1‑94 (MQ=60)
GCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCAT < SRR4302535.3577897/94‑1 (MQ=60)
GCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCAT > SRR4302535.2738312/1‑94 (MQ=60)
CAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTC > SRR4302535.2193287/1‑94 (MQ=60)
CAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTC > SRR4302535.192956/1‑94 (MQ=60)
CAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTC > SRR4302535.4627292/1‑94 (MQ=60)
AGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCT < SRR4302535.1102999/94‑1 (MQ=60)
AGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCT < SRR4302535.2041934/94‑1 (MQ=60)
GCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTC < SRR4302535.449668/94‑1 (MQ=60)
CGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCT < SRR4302535.1332932/94‑1 (MQ=60)
CGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTC > SRR4302535.2760356/1‑94 (MQ=60)
CGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTC > SRR4302535.2572064/1‑94 (MQ=60)
CGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTC > SRR4302535.1655294/1‑94 (MQ=60)
GTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGTTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCA < SRR4302535.2170503/94‑1 (MQ=60)
GTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCA > SRR4302535.4360770/1‑94 (MQ=60)
CGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAAT > SRR4302535.4654826/1‑94 (MQ=60)
CGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAAT < SRR4302535.2159992/94‑1 (MQ=60)
GTAGACATCGCCCGTTTCTGCCCCGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATC < SRR4302535.4218473/94‑1 (MQ=60)
GTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATC > SRR4302535.3341851/1‑94 (MQ=60)
GTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATC > SRR4302535.4625218/1‑94 (MQ=60)
GTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATC > SRR4302535.3123085/1‑94 (MQ=60)
GTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATC < SRR4302535.2645910/94‑1 (MQ=60)
TAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCG < SRR4302535.1255801/94‑1 (MQ=60)
TAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCG > SRR4302535.2456463/1‑94 (MQ=60)
TAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCG < SRR4302535.278115/94‑1 (MQ=60)
AGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGC > SRR4302535.2526572/1‑94 (MQ=60)
CATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCG > SRR4302535.4666774/1‑94 (MQ=60)
CATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCG < SRR4302535.3237513/94‑1 (MQ=60)
ATCGCCCGTTTCTGCCACGCATTGCTCGGTCGGTTTCGCCTCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGC > SRR4302535.2249747/1‑94 (MQ=60)
GCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACC > SRR4302535.1316996/1‑94 (MQ=60)
GCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACC > SRR4302535.982149/1‑94 (MQ=60)
GCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACC > SRR4302535.3644088/1‑94 (MQ=60)
CCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCA > SRR4302535.4629586/1‑94 (MQ=60)
CCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCAC < SRR4302535.1252351/94‑1 (MQ=60)
CGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACT > SRR4302535.1845157/1‑94 (MQ=60)
GTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTT > SRR4302535.2454337/1‑94 (MQ=60)
TTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTT < SRR4302535.988201/94‑1 (MQ=60)
TCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTT > SRR4302535.890534/1‑94 (MQ=60)
TGCCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCT < SRR4302535.617172/94‑1 (MQ=60)
CCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGC > SRR4302535.3269879/1‑94 (MQ=60)
CCACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGC < SRR4302535.2503075/94‑1 (MQ=60)
CACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCT > SRR4302535.3496388/1‑94 (MQ=60)
ACGCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTG > SRR4302535.3125863/1‑94 (MQ=60)
GCATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCG < SRR4302535.3946463/94‑1 (MQ=60)
CATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGC < SRR4302535.496410/94‑1 (MQ=60)
ATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCC > SRR4302535.1026422/1‑94 (MQ=60)
ATTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCC < SRR4302535.2021494/94‑1 (MQ=60)
TTGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCG < SRR4302535.1527040/94‑1 (MQ=60)
TGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGC > SRR4302535.2286537/1‑94 (MQ=60)
TGCTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGC < SRR4302535.2239614/94‑1 (MQ=60)
CTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCA > SRR4302535.1225309/1‑94 (MQ=60)
CTCGGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCA > SRR4302535.3223083/1‑94 (MQ=60)
GGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATC < SRR4302535.3110956/94‑1 (MQ=60)
GGTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATC > SRR4302535.3545279/1‑94 (MQ=60)
GTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCCATCG > SRR4302535.2275971/1‑94 (MQ=60)
GTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCG < SRR4302535.283106/94‑1 (MQ=60)
GTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCCGCGCCGCCAATCG < SRR4302535.2549585/94‑1 (MQ=60)
GTCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATACTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCG < SRR4302535.1905611/94‑1 (MQ=60)
TCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGG < SRR4302535.449408/94‑1 (MQ=60)
TCGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGG > SRR4302535.3109226/1‑94 (MQ=60)
CGCTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGG > SRR4302535.1571929/1‑94 (MQ=60)
CTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCA > SRR4302535.3443959/1‑94 (MQ=60)
CTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCA < SRR4302535.3651135/94‑1 (MQ=60)
CTTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCA < SRR4302535.3388923/94‑1 (MQ=60)
ctcccCCCCGGCGCAGTTTTCATAACCGACACCCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAG < SRR4302535.3253086/89‑1 (MQ=60)
TTTCGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAG < SRR4302535.2979070/94‑1 (MQ=60)
CGCCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCG > SRR4302535.365365/1‑94 (MQ=60)
CCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGT > SRR4302535.4098696/1‑94 (MQ=60)
CCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGT > SRR4302535.328113/1‑94 (MQ=60)
CCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGT > SRR4302535.573798/1‑94 (MQ=60)
CCCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTCTTTCTGCTGCGCCGCCAATCGGGCAGCCGGT > SRR4302535.3246865/1‑94 (MQ=60)
CCCGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTG < SRR4302535.1510227/94‑1 (MQ=60)
CGGCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGAT < SRR4302535.4438407/94‑1 (MQ=60)
GCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTA > SRR4302535.1913734/1‑94 (MQ=60)
GCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTA < SRR4302535.1456487/94‑1 (MQ=60)
GCGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTA < SRR4302535.2841071/94‑1 (MQ=60)
CGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAA > SRR4302535.1253858/1‑94 (MQ=60)
|
CACAGGAGCAGCCAATCGCCAGATATTTATCCGCCAGCGCGTCGTAGACATCGCCCGTTTCTGCCACGCATTGCTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAA > NC_000913/4562507‑4562693
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
