Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,575,878 |
A→G |
Y344H (TAT→CAT) |
mcrB ← |
McrB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,575,878 | 0 | A | G | 99.4%
| 492.2
/ ‑4.7
| 155 | Y344H (TAT→CAT) | mcrB | McrB |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (58/96); total (58/97) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 |
Only 100 of 156 total aligned reads displayed.
CTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTT > NC_000913/4575788‑4575966
|
tGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTc > 1:3893051/1‑93 (MQ=255)
gCTTTTTTATTGAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTca > 1:4335098/1‑93 (MQ=255)
ttttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaac < 1:4460496/93‑1 (MQ=255)
ttttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaac > 2:458786/1‑93 (MQ=255)
ttttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaaa > 1:1462667/1‑92 (MQ=255)
tttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaaca > 1:4654326/1‑93 (MQ=255)
tttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaaca > 1:3288443/1‑93 (MQ=255)
tttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaaca < 1:2088150/93‑1 (MQ=255)
ttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaacaa < 2:157792/93‑1 (MQ=255)
ttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaacaa < 1:1164375/93‑1 (MQ=255)
tttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCaacaac < 2:499872/93‑1 (MQ=255)
tttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCaacaac < 1:91750/93‑1 (MQ=255)
tttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCaacaac < 2:2627583/93‑1 (MQ=255)
ttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACg > 1:552544/1‑93 (MQ=255)
ttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACg < 2:255636/93‑1 (MQ=255)
aTTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGc > 2:3855232/1‑93 (MQ=255)
ttCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGcc > 1:2830485/1‑93 (MQ=255)
aGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCaga < 2:1930212/93‑1 (MQ=255)
gTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagag > 1:676860/1‑93 (MQ=255)
gTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagag < 1:164656/93‑1 (MQ=255)
aaaaaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagagag < 2:2053453/93‑1 (MQ=255)
aaaaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGc < 1:4253272/93‑1 (MQ=255)
aaaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCATAGGGCATGGTCAACAACGGCCAGAGAGCg > 2:3119031/1‑93 (MQ=255)
aaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGa > 1:4662573/1‑93 (MQ=255)
aaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGa < 1:3717279/93‑1 (MQ=255)
aaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGa < 2:330672/93‑1 (MQ=255)
aaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGAt > 2:452767/1‑93 (MQ=255)
aaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGAt < 2:4139421/93‑1 (MQ=255)
aaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGAt < 2:2290737/93‑1 (MQ=255)
aTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATc < 1:1186926/93‑1 (MQ=255)
aTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATc > 1:3865588/1‑93 (MQ=255)
ttCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCg > 2:2200591/1‑93 (MQ=255)
ccGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGc > 2:1619520/1‑93 (MQ=255)
gAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGt > 1:2263019/1‑93 (MQ=255)
aCTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTAt > 2:2154677/1‑93 (MQ=255)
aCTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTAt < 1:1272333/93‑1 (MQ=255)
tgtgGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTc < 2:2112141/93‑1 (MQ=255)
tgtgGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTc > 2:1934162/1‑93 (MQ=255)
gtggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCa < 1:961901/93‑1 (MQ=255)
tggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAt < 2:1057933/93‑1 (MQ=255)
tggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAt > 1:2805935/1‑93 (MQ=255)
tggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAt > 1:1854026/1‑93 (MQ=255)
ggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAtt < 2:1776871/93‑1 (MQ=255)
ggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAtt > 1:3029002/1‑93 (MQ=255)
gtATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTaaa < 1:1355671/93‑1 (MQ=255)
tATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAc < 1:472848/93‑1 (MQ=255)
tATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAc < 1:1822901/93‑1 (MQ=255)
aTCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAcc < 2:3214119/93‑1 (MQ=255)
cAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCga < 2:3192874/93‑1 (MQ=255)
cAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCga > 1:28819/1‑93 (MQ=255)
cAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCga < 1:719997/93‑1 (MQ=255)
aCCTGGCTCAATATCTATGAAAGAAAAGCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCgatgat < 1:3357134/93‑1 (MQ=255)
ccTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGata < 2:4157283/93‑1 (MQ=255)
ccTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGata < 2:3111486/93‑1 (MQ=255)
ccTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGata < 2:3514261/93‑1 (MQ=255)
cTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGatat > 1:327817/1‑93 (MQ=255)
tGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGAtata > 1:1846790/1‑93 (MQ=255)
gCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGACCGATCGGCAGTATTCATTAAACCCATGCTATaaa < 2:3903334/93‑1 (MQ=255)
cTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATaaaa > 2:4134652/1‑92 (MQ=255)
cTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAAc < 2:3837032/93‑1 (MQ=255)
cTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAAc > 2:645475/1‑93 (MQ=255)
tCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACa < 2:2750782/93‑1 (MQ=255)
tCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACa < 1:3268504/93‑1 (MQ=255)
tCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACa > 1:352258/1‑93 (MQ=255)
cAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAt < 1:1998696/93‑1 (MQ=255)
cAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAt < 2:3975440/93‑1 (MQ=255)
cAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAt < 2:4276782/93‑1 (MQ=255)
aaTATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAtt > 1:3001888/1‑93 (MQ=255)
aaTATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAtt < 1:1592555/93‑1 (MQ=255)
atatCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtc < 2:944383/93‑1 (MQ=255)
tatCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtct < 2:2854502/93‑1 (MQ=255)
atCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtctc < 1:4477556/93‑1 (MQ=255)
atCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtctc < 1:1430322/93‑1 (MQ=255)
tCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTcc > 1:2141687/1‑93 (MQ=255)
cTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCg < 2:1746351/93‑1 (MQ=255)
cTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCg < 2:4213029/93‑1 (MQ=255)
tATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCgg > 1:2509239/1‑93 (MQ=255)
tATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCgg < 2:1489219/93‑1 (MQ=255)
tATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCgg > 2:1493281/1‑93 (MQ=255)
tATGAAAGAAAATCGTCTGCGTACGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCgg > 2:2466934/1‑93 (MQ=255)
tGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGCCAGTATTCATTAAACCGATGTAATAAACATTCTCCGGGa > 1:3766939/1‑93 (MQ=255)
aaagaaaATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACa < 2:1226569/93‑1 (MQ=255)
gaaaATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAg > 1:988135/1‑93 (MQ=255)
gaaaATCGTCTGCGTAGGGCATGGTCAACAAAGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAg > 2:3755477/1‑93 (MQ=255)
aaaTCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGaa < 1:1568531/93‑1 (MQ=255)
aaTCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAt < 1:1793878/93‑1 (MQ=255)
aaTCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAt > 2:4045759/1‑93 (MQ=255)
aaTCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAt < 2:2785030/93‑1 (MQ=255)
tCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCg < 2:1812786/93‑1 (MQ=255)
tCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCg < 2:597438/93‑1 (MQ=255)
tCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttc < 1:3133333/93‑1 (MQ=255)
tCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttc < 2:2094351/93‑1 (MQ=255)
tCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttc > 2:4507990/1‑93 (MQ=255)
tCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttc < 2:2500044/93‑1 (MQ=255)
tCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttc > 1:2940150/1‑93 (MQ=255)
tGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttctt < 1:2122518/93‑1 (MQ=255)
gCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttcttc < 1:605181/93‑1 (MQ=255)
cGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCa < 1:2648823/93‑1 (MQ=255)
gggCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGt < 2:2362473/93‑1 (MQ=255)
gCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGttt > 2:3354139/1‑93 (MQ=255)
|
CTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTT > NC_000913/4575788‑4575966
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCG > NC_000913/4575785‑4575969
|
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATG > SRR4302535.2307019/1‑94 (MQ=60)
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATG < SRR4302535.4368843/94‑1 (MQ=60)
TTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGG > SRR4302535.4107414/1‑94 (MQ=60)
TCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGT > SRR4302535.807708/1‑94 (MQ=60)
CTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTC > SRR4302535.3919738/1‑94 (MQ=60)
TGCTTTTTTATTGAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCA > SRR4302535.4364749/1‑94 (MQ=60)
CTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAAA > SRR4302535.1473145/1‑94 (MQ=60)
TTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACA < SRR4302535.4491089/94‑1 (MQ=60)
TTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACA > SRR4302535.3311306/1‑94 (MQ=60)
TTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACA > SRR4302535.4685833/1‑94 (MQ=60)
TTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAA < SRR4302535.2103196/94‑1 (MQ=60)
TTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAAC < SRR4302535.3030932/94‑1 (MQ=60)
TTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAAC < SRR4302535.1172691/94‑1 (MQ=60)
TTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACG > SRR4302535.556414/1‑94 (MQ=60)
TTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACG < SRR4302535.92398/94‑1 (MQ=60)
TATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGC > SRR4302535.4444572/1‑94 (MQ=60)
ATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCC > SRR4302535.2850575/1‑94 (MQ=60)
TCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAG < SRR4302535.1373147/94‑1 (MQ=60)
AGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAG > SRR4302535.681592/1‑94 (MQ=60)
GTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGA < SRR4302535.165807/94‑1 (MQ=60)
TAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAG < SRR4302535.4709115/94‑1 (MQ=60)
AAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGC < SRR4302535.4615519/94‑1 (MQ=60)
AAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCG < SRR4302535.329039/94‑1 (MQ=60)
AAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCG < SRR4302535.4282417/94‑1 (MQ=60)
AAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCG > SRR4302535.2892994/1‑94 (MQ=60)
AAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGA > SRR4302535.4694104/1‑94 (MQ=60)
AAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGAT < SRR4302535.2118149/94‑1 (MQ=60)
AAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGAT < SRR4302535.3743034/94‑1 (MQ=60)
AATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATC > SRR4302535.3892174/1‑94 (MQ=60)
ATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCG < SRR4302535.1195408/94‑1 (MQ=60)
GGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGT > SRR4302535.2279140/1‑94 (MQ=60)
ACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATT > SRR4302535.3016086/1‑94 (MQ=60)
ACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATT < SRR4302535.1281425/94‑1 (MQ=60)
TGTGGTGGATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCA > SRR4302535.1974783/1‑94 (MQ=60)
GTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAT > SRR4302535.2825883/1‑94 (MQ=60)
GTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAT > SRR4302535.1867381/1‑94 (MQ=60)
GTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAT < SRR4302535.968736/94‑1 (MQ=60)
TGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATT > SRR4302535.983093/1‑94 (MQ=60)
TGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATT > SRR4302535.3050205/1‑94 (MQ=60)
GTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAC < SRR4302535.1365371/94‑1 (MQ=60)
GTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAC < SRR4302535.2825692/94‑1 (MQ=60)
TATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACC < SRR4302535.476158/94‑1 (MQ=60)
TATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACC < SRR4302535.1836068/94‑1 (MQ=60)
ATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCG < SRR4302535.3800000/94‑1 (MQ=60)
TCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGA > SRR4302535.29043/1‑94 (MQ=60)
CAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGAT < SRR4302535.725055/94‑1 (MQ=60)
AAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATG < SRR4302535.1238261/94‑1 (MQ=60)
ACCTGGCTCAATATCTATGAAAGAAAAGCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATA < SRR4302535.3380506/94‑1 (MQ=60)
CCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATAT > SRR4302535.330090/1‑94 (MQ=60)
CCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATAT > SRR4302535.541843/1‑94 (MQ=60)
CTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATA > SRR4302535.1860100/1‑94 (MQ=60)
TGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAA > SRR4302535.342135/1‑94 (MQ=60)
CTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACA > SRR4302535.354690/1‑94 (MQ=60)
TCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAT < SRR4302535.3291212/94‑1 (MQ=60)
CAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT > SRR4302535.3022931/1‑94 (MQ=60)
CAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT < SRR4302535.2013094/94‑1 (MQ=60)
AATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTC < SRR4302535.2453531/94‑1 (MQ=60)
AATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTC < SRR4302535.1604047/94‑1 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC > SRR4302535.2157099/1‑94 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC < SRR4302535.1440527/94‑1 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC < SRR4302535.4508299/94‑1 (MQ=60)
TCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCG < SRR4302535.1837923/94‑1 (MQ=60)
CTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGG > SRR4302535.3745376/1‑94 (MQ=60)
CTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGG > SRR4302535.2527328/1‑94 (MQ=60)
ATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGCCAGTATTCATTAAACCGATGTAATAAACATTCTCCGGGA > SRR4302535.3792951/1‑94 (MQ=60)
AAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACAT < SRR4302535.621290/94‑1 (MQ=60)
AGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAG > SRR4302535.995155/1‑94 (MQ=60)
AAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAA < SRR4302535.3310918/94‑1 (MQ=60)
AAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAT < SRR4302535.1688976/94‑1 (MQ=60)
AAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAT < SRR4302535.1579850/94‑1 (MQ=60)
AAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAT < SRR4302535.2274181/94‑1 (MQ=60)
AATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATC < SRR4302535.1806848/94‑1 (MQ=60)
ATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCG < SRR4302535.1651595/94‑1 (MQ=60)
CGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTT < SRR4302535.4118979/94‑1 (MQ=60)
GTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTC > SRR4302535.2960825/1‑94 (MQ=60)
TCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCT < SRR4302535.3155150/94‑1 (MQ=60)
TGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTC < SRR4302535.2137820/94‑1 (MQ=60)
GCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCA < SRR4302535.609413/94‑1 (MQ=60)
CGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCAT < SRR4302535.2667795/94‑1 (MQ=60)
GTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATC > SRR4302535.1526971/1‑94 (MQ=60)
ATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCG < SRR4302535.1620418/94‑1 (MQ=60)
ATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCG > SRR4302535.4467051/1‑94 (MQ=60)
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GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCG > NC_000913/4575785‑4575969
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
