Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,575,878 |
A→G |
Y344H (TAT→CAT) |
mcrB ← |
McrB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,575,878 | 0 | A | G | 99.3%
| 960.9
/ ‑3.8
| 303 | Y344H (TAT→CAT) | mcrB | McrB |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (124/177); total (125/178) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01 |
Only 100 of 304 total aligned reads displayed.
CTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTT > NC_000913/4575788‑4575967
|
tGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTc > 1:398468/1‑93 (MQ=255)
tGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTc > 2:1351627/1‑93 (MQ=255)
ttttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaac > 1:5484725/1‑93 (MQ=255)
ttttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaac < 2:1562657/93‑1 (MQ=255)
ttttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaac > 2:6211514/1‑93 (MQ=255)
tttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaaca > 2:5383693/1‑93 (MQ=255)
tttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaaca > 2:2318219/1‑93 (MQ=255)
ttttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTcaacaa < 1:7390540/93‑1 (MQ=255)
tttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCaacaac < 1:1350255/93‑1 (MQ=255)
ttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACg < 2:7754045/93‑1 (MQ=255)
ttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACg > 2:4510193/1‑93 (MQ=255)
ttATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACg < 1:7792383/93‑1 (MQ=255)
tATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACCACgg > 1:1252117/1‑93 (MQ=255)
tATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACgg > 2:4773166/1‑93 (MQ=255)
tATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACgg > 2:1662406/1‑93 (MQ=255)
aTTCAGTAAAAAATGCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGc < 1:4124007/93‑1 (MQ=255)
ttCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGcc > 1:2739148/1‑93 (MQ=255)
tCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCa < 2:4639687/93‑1 (MQ=255)
aGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCaga < 2:1515995/93‑1 (MQ=255)
aGTAAAAAATTCAGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCaga < 2:5160493/93‑1 (MQ=255)
gTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagag < 2:3298733/93‑1 (MQ=255)
gTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagag < 1:2041791/93‑1 (MQ=255)
tAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagaga < 2:3835901/93‑1 (MQ=255)
tAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagaga > 1:6985362/1‑93 (MQ=255)
tAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagaga < 1:6777893/93‑1 (MQ=255)
tAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCagaga > 2:6965824/1‑93 (MQ=255)
aaaaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGc < 2:3927689/93‑1 (MQ=255)
aaaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCg > 2:7397382/1‑93 (MQ=255)
aaaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCg > 2:5736039/1‑93 (MQ=255)
aaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGa > 1:1756888/1‑93 (MQ=255)
aaaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGa < 2:4209500/93‑1 (MQ=255)
aaTTCCGGAGCGGGGGTGTATCAAAACCTGGCTCGATATCTATGAAAGAAAAGCGTCTGCGTAGGGCTTGGTCAACATCGGCCAGAGAGTGAt < 1:3144549/93‑1 (MQ=255)
aaTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGAt > 2:6486676/1‑93 (MQ=255)
atcccGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATc < 2:1085849/90‑1 (MQ=255)
aTTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATc > 2:2903156/1‑93 (MQ=255)
ttCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCg < 1:842191/93‑1 (MQ=255)
cGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCa > 1:5721016/1‑93 (MQ=255)
cGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCa < 2:3478843/93‑1 (MQ=255)
ggAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAg < 2:5560291/93‑1 (MQ=255)
ggAACGGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAg < 1:6574057/93‑1 (MQ=255)
aaCTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTa < 2:3258754/93‑1 (MQ=255)
aCTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTAt < 2:1007019/93‑1 (MQ=255)
cTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTAtt < 2:4972338/93‑1 (MQ=255)
cTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTAtt > 1:1137782/1‑93 (MQ=255)
tgtgGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTc < 1:7654699/93‑1 (MQ=255)
tgtgGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTc > 2:1746223/1‑93 (MQ=255)
gtggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCa < 2:3753754/93‑1 (MQ=255)
gtggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCa < 2:7622041/93‑1 (MQ=255)
gtggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCa < 1:2173071/93‑1 (MQ=255)
tggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAt < 2:277782/93‑1 (MQ=255)
ggtgTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAtt > 1:4650780/1‑93 (MQ=255)
gtgtATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTa < 1:2962175/93‑1 (MQ=255)
tgtATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTaa < 1:6371541/93‑1 (MQ=255)
tgtATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTaa < 1:4851091/93‑1 (MQ=255)
tATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAc < 1:5541670/93‑1 (MQ=255)
tCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCg > 2:591134/1‑93 (MQ=255)
cAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCga < 2:6329402/93‑1 (MQ=255)
cAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCga < 1:3419666/93‑1 (MQ=255)
cAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCga < 2:3616105/93‑1 (MQ=255)
ccTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGata > 1:28222/1‑93 (MQ=255)
cTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGatat > 1:7487410/1‑93 (MQ=255)
cTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGatat > 2:7523933/1‑93 (MQ=255)
cTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGatat < 2:1975580/93‑1 (MQ=255)
tGGCTCAATATCTATGAAAGAAAATCGTCGGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGAtata < 1:3889719/93‑1 (MQ=255)
gCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATaaa > 1:5627053/1‑93 (MQ=255)
cTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAAc < 2:5794256/93‑1 (MQ=255)
tCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACa > 2:3138814/1‑93 (MQ=255)
tCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACa > 2:7329392/1‑93 (MQ=255)
cAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAACCCGATGATATAAACAt < 2:5217861/93‑1 (MQ=255)
cAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAt < 1:6910926/93‑1 (MQ=255)
cAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAt > 1:5133252/1‑93 (MQ=255)
cAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAt > 2:711048/1‑93 (MQ=255)
aaTATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAtt > 2:5996657/1‑93 (MQ=255)
aaTATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAtt < 2:2425010/93‑1 (MQ=255)
aaTATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAtt < 1:1526069/93‑1 (MQ=255)
aaTATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAtt > 1:6474017/1‑93 (MQ=255)
atatCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtc < 2:6663515/93‑1 (MQ=255)
atatCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtc < 1:7262973/93‑1 (MQ=255)
atatCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtc > 2:4098396/1‑93 (MQ=255)
atCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATtctc < 1:3697737/93‑1 (MQ=255)
tCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTcc > 1:5897636/1‑93 (MQ=255)
tCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTcc > 1:2459608/1‑93 (MQ=255)
tCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTcc < 1:6109541/93‑1 (MQ=255)
tCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTcc > 2:373303/1‑93 (MQ=255)
tATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCgg > 1:427980/1‑93 (MQ=255)
aTGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCggg > 2:1194887/1‑93 (MQ=255)
gaaagaaaATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGAc > 1:1436581/1‑93 (MQ=255)
aaagaaaATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACa < 1:4398006/93‑1 (MQ=255)
agaaaATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGCTATAAACATTCTCCGGGACATa < 2:4982466/93‑1 (MQ=255)
gaaaATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAg < 1:456009/93‑1 (MQ=255)
aTCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATc > 2:1300726/1‑93 (MQ=255)
tCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCg < 1:1933711/93‑1 (MQ=255)
tCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttc > 1:7737997/1‑93 (MQ=255)
tCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttc > 1:3185547/1‑93 (MQ=255)
cTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGttct < 2:2658387/93‑1 (MQ=255)
cGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCa < 1:755044/93‑1 (MQ=255)
tAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATc < 2:294840/93‑1 (MQ=255)
tAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATc < 1:4699305/93‑1 (MQ=255)
aGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCg > 1:6532054/1‑93 (MQ=255)
cATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGtttt < 2:7922908/93‑1 (MQ=255)
|
CTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTT > NC_000913/4575788‑4575967
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCGGA > NC_000913/4575785‑4575971
|
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATG > SRR4302543.7203846/1‑94 (MQ=60)
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATG > SRR4302543.7203845/1‑94 (MQ=60)
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATG > SRR4302543.5767294/1‑94 (MQ=60)
GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGGAGGGCATG > SRR4302543.7297737/1‑94 (MQ=60)
GTTCTGCTTTTTCATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATG > SRR4302543.3315557/1‑94 (MQ=60)
TTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGG > SRR4302543.7396426/1‑94 (MQ=60)
TCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGT < SRR4302543.6336023/94‑1 (MQ=60)
CTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTC > SRR4302543.402151/1‑94 (MQ=60)
CTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAAC > SRR4302543.7567878/1‑94 (MQ=60)
CTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAAC > SRR4302543.5534445/1‑94 (MQ=60)
TTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAAC < SRR4302543.1776141/94‑1 (MQ=60)
TTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAAC < SRR4302543.7461534/94‑1 (MQ=60)
TTTTATTCAGTAAAAAAGTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAAC < SRR4302543.6032853/94‑1 (MQ=60)
TTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACG < SRR4302543.92062/94‑1 (MQ=60)
TTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACG < SRR4302543.1362337/94‑1 (MQ=60)
TTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACCACGG > SRR4302543.1263343/1‑94 (MQ=60)
TTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGG < SRR4302543.7865822/94‑1 (MQ=60)
ATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCC < SRR4302543.4161185/94‑1 (MQ=60)
ATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCC > SRR4302543.2764066/1‑94 (MQ=60)
ATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCC > SRR4302543.4754597/1‑94 (MQ=60)
ATTCAGTAAAAAATGCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCC < SRR4302543.4161184/94‑1 (MQ=60)
CAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGA < SRR4302543.3181673/94‑1 (MQ=60)
AGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAG < SRR4302543.911579/94‑1 (MQ=60)
GTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGA > SRR4302543.7051106/1‑94 (MQ=60)
GTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGA > SRR4302543.3811585/1‑94 (MQ=60)
GTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGA < SRR4302543.2060103/94‑1 (MQ=60)
TAAAAAATTCCGGAACTGTGGTGTATCAAACCCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAG < SRR4302543.4467313/94‑1 (MQ=60)
TAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAG < SRR4302543.6841911/94‑1 (MQ=60)
AAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGC < SRR4302543.6583525/94‑1 (MQ=60)
AAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGC < SRR4302543.1785214/94‑1 (MQ=60)
AAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCG < SRR4302543.120020/94‑1 (MQ=60)
AAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGA > SRR4302543.1772580/1‑94 (MQ=60)
AAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGAT > SRR4302543.5533999/1‑94 (MQ=60)
AATTCCGGAGCGGGGGTGTATCAAAACCTGGCTCGATATCTATGAAAGAAAAGCGTCTGCGTAGGGCTTGGTCAACATCGGCCAGAGAGTGATC < SRR4302543.3172833/94‑1 (MQ=55)
AATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATC < SRR4302543.1679942/94‑1 (MQ=60)
AATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATC < SRR4302543.2145893/94‑1 (MQ=60)
AATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATC < SRR4302543.6989793/94‑1 (MQ=60)
ATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCG < SRR4302543.221345/94‑1 (MQ=60)
TTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGG < SRR4302543.849635/94‑1 (MQ=60)
CCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCA > SRR4302543.5773217/1‑94 (MQ=60)
CCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCA > SRR4302543.5772993/1‑94 (MQ=60)
CGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAG > SRR4302543.1955069/1‑94 (MQ=60)
CGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAG < SRR4302543.1275185/94‑1 (MQ=60)
GGAACGGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGT < SRR4302543.6635954/94‑1 (MQ=60)
GAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTA < SRR4302543.5779885/94‑1 (MQ=60)
GACTGTAGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTAT < SRR4302543.2048079/94‑1 (MQ=60)
ACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATT > SRR4302543.1148130/1‑94 (MQ=60)
ACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATT > SRR4302543.6586407/1‑94 (MQ=60)
ACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATT < SRR4302543.1339510/94‑1 (MQ=60)
CTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTC < SRR4302543.7658010/94‑1 (MQ=60)
CTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTC < SRR4302543.753742/94‑1 (MQ=60)
TGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCA > SRR4302543.3371024/1‑94 (MQ=60)
TGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCA < SRR4302543.384783/94‑1 (MQ=60)
TGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCA < SRR4302543.7727271/94‑1 (MQ=60)
TGTGGTGTATCAAAACCTGGCACCATATCTATGAAAGAAAATCGGCTGCGTAGGGAATGGGCAACAACGGCCAGAGAGCGATCGGCAGTATTCA < SRR4302543.7727272/94‑1 (MQ=60)
GTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCAT < SRR4302543.2192537/94‑1 (MQ=60)
TGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTCGGGAATGGTCAACAAAGGCCAGAGAGCGATCGGCAGCATTCATT > SRR4302543.4693317/1‑94 (MQ=60)
TGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATT > SRR4302543.4693110/1‑94 (MQ=60)
TGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATT > SRR4302543.4693111/1‑94 (MQ=60)
TGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATT < SRR4302543.1390037/94‑1 (MQ=60)
GGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTA > SRR4302543.3373986/1‑94 (MQ=60)
GTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAA < SRR4302543.6943501/94‑1 (MQ=60)
GTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAA < SRR4302543.2989069/94‑1 (MQ=60)
TGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAA < SRR4302543.4895330/94‑1 (MQ=60)
TGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAA < SRR4302543.6431475/94‑1 (MQ=60)
GTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAC > SRR4302543.6993871/1‑94 (MQ=60)
GTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAC < SRR4302543.7882777/94‑1 (MQ=60)
GTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAAC > SRR4302543.5587497/1‑94 (MQ=60)
GTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGCCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAACC < SRR4302543.7176313/94‑1 (MQ=60)
TATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACC < SRR4302543.5592058/94‑1 (MQ=60)
ATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCG < SRR4302543.5545037/94‑1 (MQ=60)
ATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCG > SRR4302543.7494697/1‑94 (MQ=60)
TCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGA < SRR4302543.7356098/94‑1 (MQ=60)
CAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGAT < SRR4302543.1451868/94‑1 (MQ=60)
CAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGAT < SRR4302543.3450272/94‑1 (MQ=60)
CAAAACCTGGATCAATATGTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGAGATCGGCAGTATTCATTAAACCGAT < SRR4302543.2187093/94‑1 (MQ=60)
AAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGA < SRR4302543.2563661/94‑1 (MQ=60)
ACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATA > SRR4302543.28477/1‑94 (MQ=60)
CCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATAT > SRR4302543.7559056/1‑94 (MQ=60)
CCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATAT < SRR4302543.2504297/94‑1 (MQ=60)
cggtgtcaatatgatgtaagtaaacaCGTCTTCGTAGGGCATGGTCACCACCGGCAAGAGAGCGATCGGCAGTATTCATTAAACCGCTGATATA < SRR4302543.478886/68‑1 (MQ=40)
CTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATA < SRR4302543.478887/94‑1 (MQ=60)
CTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATA < SRR4302543.2776690/94‑1 (MQ=60)
CTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATA < SRR4302543.2776689/94‑1 (MQ=60)
CTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATA < SRR4302543.4756165/94‑1 (MQ=60)
TGGCTCAATATCTATGAAAGAAAATCGTCGGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAA < SRR4302543.3924059/94‑1 (MQ=60)
GGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAA < SRR4302543.79468/94‑1 (MQ=60)
GGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAA > SRR4302543.5678329/1‑94 (MQ=60)
GCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAAC > SRR4302543.4990354/1‑94 (MQ=60)
CTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACA < SRR4302543.5238631/94‑1 (MQ=60)
CTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACA < SRR4302543.6896994/94‑1 (MQ=60)
CTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACA > SRR4302543.405408/1‑94 (MQ=60)
TCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACAT > SRR4302543.5179653/1‑94 (MQ=60)
CAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT < SRR4302543.6975880/94‑1 (MQ=60)
CAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT > SRR4302543.6535006/1‑94 (MQ=60)
CAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT > SRR4302543.6535005/1‑94 (MQ=60)
CAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT > SRR4302543.2457901/1‑94 (MQ=60)
CAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT > SRR4302543.7695082/1‑94 (MQ=60)
CAATATATATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATT < SRR4302543.1650764/94‑1 (MQ=60)
AATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTC > SRR4302543.3481900/1‑94 (MQ=60)
AATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTC < SRR4302543.1539766/94‑1 (MQ=60)
ATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCT < SRR4302543.7333147/94‑1 (MQ=60)
ATATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCT > SRR4302543.4018523/1‑94 (MQ=60)
TATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTC < SRR4302543.7388701/94‑1 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC > SRR4302543.3642163/1‑94 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC > SRR4302543.5951430/1‑94 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC > SRR4302543.5804645/1‑94 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC > SRR4302543.2481784/1‑94 (MQ=60)
ATCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCC < SRR4302543.3730245/94‑1 (MQ=60)
TCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCG < SRR4302543.6167419/94‑1 (MQ=60)
TCTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCG < SRR4302543.6167418/94‑1 (MQ=60)
CTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGG > SRR4302543.6807662/1‑94 (MQ=60)
CTATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGG > SRR4302543.431990/1‑94 (MQ=60)
TATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGG < SRR4302543.6524208/94‑1 (MQ=60)
TATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGG > SRR4302543.3051772/1‑94 (MQ=60)
ATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGA > SRR4302543.628874/1‑94 (MQ=60)
ATGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGA > SRR4302543.628875/1‑94 (MQ=60)
TGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGAC < SRR4302543.4685936/94‑1 (MQ=60)
TGAAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGAC > SRR4302543.1449567/1‑94 (MQ=60)
AAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACAT < SRR4302543.4437641/94‑1 (MQ=60)
AAAGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACAT < SRR4302543.4437876/94‑1 (MQ=60)
AAGAAAATCGTCTGCGTAGGGCATAGTCAACCACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATAAAAACATTCTCCGGGACATA > SRR4302543.5592399/1‑94 (MQ=60)
AGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAG < SRR4302543.3960630/94‑1 (MQ=60)
AGAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAG < SRR4302543.7813878/94‑1 (MQ=60)
GAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGA < SRR4302543.1162778/94‑1 (MQ=60)
GAAAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGA < SRR4302543.460257/94‑1 (MQ=60)
AAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAT > SRR4302543.5689562/1‑94 (MQ=60)
AAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAT < SRR4302543.3113224/94‑1 (MQ=60)
AAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAT > SRR4302543.4047297/1‑94 (MQ=60)
AAATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAAT < SRR4302543.2956420/94‑1 (MQ=60)
AATCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATC < SRR4302543.755626/94‑1 (MQ=60)
ATCGTCTGCGTAGGGCATGGTCAACAACGGACAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCG < SRR4302543.5628928/94‑1 (MQ=60)
TCGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGT < SRR4302543.1951101/94‑1 (MQ=60)
CGTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTT < SRR4302543.4646865/94‑1 (MQ=60)
GTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTC > SRR4302543.7811104/1‑94 (MQ=60)
GTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTC > SRR4302543.3214278/1‑94 (MQ=60)
GTCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTC > SRR4302543.7811106/1‑94 (MQ=60)
TCTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCT > SRR4302543.6595080/1‑94 (MQ=60)
CTGCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTT > SRR4302543.2908059/1‑94 (MQ=60)
GCGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCA < SRR4302543.4208639/94‑1 (MQ=60)
CGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCAT < SRR4302543.761725/94‑1 (MQ=60)
CGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCAT > SRR4302543.14506/1‑94 (MQ=60)
CGTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCAT > SRR4302543.6666687/1‑94 (MQ=60)
GTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATC < SRR4302543.7104124/94‑1 (MQ=60)
GTAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATC < SRR4302543.7806538/94‑1 (MQ=60)
TAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCG < SRR4302543.4358970/94‑1 (MQ=60)
TAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCG > SRR4302543.6593548/1‑94 (MQ=60)
TAGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCG < SRR4302543.4742220/94‑1 (MQ=60)
AGGGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGT < SRR4302543.7784836/94‑1 (MQ=60)
GGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTT > SRR4302543.6630812/1‑94 (MQ=60)
GGCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTT < SRR4302543.495023/94‑1 (MQ=60)
GCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTT < SRR4302543.4514294/94‑1 (MQ=60)
GCATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTT < SRR4302543.3184181/94‑1 (MQ=60)
CATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTC < SRR4302543.1430883/94‑1 (MQ=60)
ATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCG < SRR4302543.6158195/94‑1 (MQ=60)
ATGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCG > SRR4302543.5188132/1‑94 (MQ=60)
TGGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCGG < SRR4302543.3244613/94‑1 (MQ=60)
TGGTCAACAACGCCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCGG < SRR4302543.3244614/94‑1 (MQ=60)
GGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCGGA < SRR4302543.1395998/94‑1 (MQ=60)
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GTTCTGCTTTTTTATTCAGTAAAAAATTCCGGAACTGTGGTGTATCAAAACCTGGCTCAATATCTATGAAAGAAAATCGTCTGCGTAGGGCATAGTCAACAACGGCCAGAGAGCGATCGGCAGTATTCATTAAACCGATGATATAAACATTCTCCGGGACATAGAATCGTTCTTCATCGTTTTCGGA > NC_000913/4575785‑4575971
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
