Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,601,614	(A)_7→6	coding (569/726 nt)	yjjQ →	putative regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,601,608	0	A	.	100.0%	1067.6 / NA	232	coding (563/726 nt)	yjjQ	putative regulator
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (108/124); total (108/124)

Only 100 of 254 total aligned reads displayed.

AGCGCAAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACT  >  NC_000913/4601518‑4601695

 gcgcAAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaa                                                                                      <  1:378180/93‑1 (MQ=255)

 gcgcAAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaa                                                                                      >  2:2162150/1‑93 (MQ=255)

   gcAAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaaaa                                                                                    >  1:2112658/1‑93 (MQ=255)

   gcAAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaaaa                                                                                    <  2:63293/93‑1 (MQ=255)

     aaGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaaaaca                                                                                  <  1:2188079/93‑3 (MQ=255)

     aaGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaaaaca                                                                                  <  1:2652502/93‑3 (MQ=255)

     aaGGTACTGCGGCTATTAGGTAAAGGAGGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaaaaca                                                                                  <  1:1445140/93‑3 (MQ=255)

      aGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaaaacag                                                                                 <  1:1504779/93‑4 (MQ=255)

       ggTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCaaaaaacagt                                                                                <  2:2240144/93‑5 (MQ=255)

        gTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTg                                                                              <  2:680732/93‑1 (MQ=255)

        gTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTg                                                                              >  1:180385/1‑93 (MQ=255)

         tACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATTAGCGCCC‑AAAAAACAGTGc                                                                             <  2:4541625/93‑1 (MQ=255)

           cTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGa                                                                           >  2:1022168/1‑93 (MQ=255)

            ttcGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGAt                                                                          <  1:1738416/91‑1 (MQ=255)

            tGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGAt                                                                          >  2:1619025/1‑93 (MQ=255)

            tGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGAt                                                                          >  2:3358001/1‑93 (MQ=255)

             gCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATg                                                                         <  2:3582803/93‑1 (MQ=255)

              cGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGc                                                                        <  1:1711856/93‑1 (MQ=255)

                gCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGt                                                                      >  2:2270081/1‑93 (MQ=255)

                  tATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCg                                                                    <  1:864444/93‑1 (MQ=255)

                  tATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCg                                                                    >  1:2370090/1‑93 (MQ=255)

                   aTTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGa                                                                   <  1:4130686/93‑1 (MQ=255)

                   aTTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGa                                                                   >  1:1670551/1‑93 (MQ=255)

                     tAGGTAAAGGATAGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACt                                                                 <  2:3230352/93‑1 (MQ=255)

                         tAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCa                                                             >  1:2971489/1‑93 (MQ=255)

                          aaaGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCaa                                                            <  1:4587213/93‑1 (MQ=255)

                          aaaGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCaa                                                            <  2:3641034/93‑1 (MQ=255)

                          aaaGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCaa                                                            >  1:4078948/1‑93 (MQ=255)

                          aaaGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCaa                                                            <  1:3038807/93‑1 (MQ=255)

                           aaGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAAt                                                           <  1:1260349/93‑1 (MQ=255)

                           aaGGATGGGGCATCAACCAGATAGCTTCATAGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAAt                                                           <  2:1695537/93‑1 (MQ=255)

                             agATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTc                                                         <  1:3441473/92‑1 (MQ=255)

                              gATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTca                                                        <  1:4382878/93‑1 (MQ=255)

                              gATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTca                                                        <  2:341515/93‑1 (MQ=255)

                               aTGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGGCTGGCAATTcac                                                       <  1:4477817/93‑1 (MQ=255)

                                tGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTcaca                                                      >  2:64877/1‑93 (MQ=255)

                                tGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTcaca                                                      >  1:3583727/1‑93 (MQ=255)

                                 ggggCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAg                                                     >  2:1996526/1‑93 (MQ=255)

                                 ggggCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAg                                                     <  2:1864324/93‑1 (MQ=255)

                                    gCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCaa                                                  <  1:4295131/93‑1 (MQ=255)

                                     cATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAAc                                                 <  1:858555/93‑1 (MQ=255)

                                     cATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAAc                                                 <  2:1371226/93‑1 (MQ=255)

                                       tCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGc                                               <  1:3155234/93‑1 (MQ=255)

                                       tCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGc                                               >  1:1040707/1‑93 (MQ=255)

                                       tCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGc                                               <  2:3156380/93‑1 (MQ=255)

                                        cAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCt                                              >  2:2328872/1‑93 (MQ=255)

                                         aaCCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTg                                             >  1:1986873/1‑93 (MQ=255)

                                         aaCCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTg                                             <  1:599516/93‑1 (MQ=255)

                                             aGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAAt                                         <  2:419476/93‑1 (MQ=255)

                                             aGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAAt                                         <  2:3528944/93‑1 (MQ=255)

                                             aGATAGCGTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAAt                                         <  1:2068012/93‑1 (MQ=255)

                                              gATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATg                                        >  1:3362471/1‑93 (MQ=255)

                                              gATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATg                                        >  1:1963969/1‑93 (MQ=255)

                                                tAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTa                                      >  1:757404/1‑93 (MQ=255)

                                                 aGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTAt                                     >  2:4199549/1‑93 (MQ=255)

                                                  gCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATg                                    >  1:4205024/1‑93 (MQ=255)

                                                    ttCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCa                                  >  2:300098/1‑93 (MQ=255)

                                                    ttCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCa                                  >  1:2991880/1‑93 (MQ=255)

                                                      cATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATg                                <  2:2873274/93‑1 (MQ=255)

                                                      cATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATg                                >  1:3754268/1‑93 (MQ=255)

                                                       aTTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATgg                               >  1:2229432/1‑93 (MQ=255)

                                                       aTTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATgg                               >  2:2658176/1‑93 (MQ=255)

                                                        ttGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGa                              >  2:3668425/1‑93 (MQ=255)

                                                        ttGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGa                              <  2:4449556/93‑1 (MQ=255)

                                                         tGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGAt                             >  1:1400837/1‑93 (MQ=255)

                                                         tGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGAt                             <  1:660266/93‑1 (MQ=255)

                                                          gCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATa                            <  2:585190/93‑1 (MQ=255)

                                                          gCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATa                            >  2:3100053/1‑93 (MQ=255)

                                                            ttAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATaaa                          <  1:807777/93‑1 (MQ=255)

                                                            ttAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATaaa                          >  1:1517780/1‑93 (MQ=255)

                                                            ttAAGAAAAGCAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATaaa                          >  1:2021488/1‑93 (MQ=255)

                                                             tAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAAt                         <  2:3617089/93‑1 (MQ=255)

                                                              aaGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATa                        <  2:373554/93‑1 (MQ=255)

                                                               aGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAg                       <  2:1954292/93‑1 (MQ=255)

                                                               aGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAg                       >  1:2842954/1‑93 (MQ=255)

                                                                gAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgc                      >  1:3890620/1‑93 (MQ=255)

                                                                 aaaaGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcg                     >  1:4405835/1‑93 (MQ=255)

                                                                 aaaaGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcg                     <  1:430986/93‑1 (MQ=255)

                                                                  aaaGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgctc                    <  2:4618094/93‑3 (MQ=255)

                                                                  aaaGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcgc                    <  2:279332/93‑1 (MQ=255)

                                                                   aaGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcgcg                   >  1:2529387/1‑93 (MQ=255)

                                                                     gTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCa                 <  2:292172/93‑1 (MQ=255)

                                                                     gTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCa                 <  2:2019778/93‑1 (MQ=255)

                                                                     ataataaAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCa                 <  1:3139336/92‑1 (MQ=255)

                                                                      taataaAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAg                <  2:1473736/93‑1 (MQ=255)

                                                                      taataaAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAg                >  1:1224893/1‑93 (MQ=255)

                                                                         taaAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGt             <  1:1075393/93‑1 (MQ=255)

                                                                          aaaaCTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTg            >  2:1799508/1‑93 (MQ=255)

                                                                          aaaaCTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTg            >  1:3986516/1‑93 (MQ=255)

                                                                           aaaCTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGc           <  1:3518654/93‑1 (MQ=255)

                                                                              cTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAag        >  2:1092515/1‑93 (MQ=255)

                                                                               tATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAaga       <  2:3275538/93‑1 (MQ=255)

                                                                               tATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAaga       <  2:3869082/93‑1 (MQ=255)

                                                                               tATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAaga       <  1:2906665/93‑1 (MQ=255)

                                                                               tATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAaga       >  1:258981/1‑93 (MQ=255)

                                                                                aTCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAagag      >  1:2398534/1‑93 (MQ=255)

                                                                                   aGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGaac   <  2:4421453/93‑1 (MQ=255)

                                                                                    gcgcCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGaact  <  1:3676031/93‑1 (MQ=255)

                                                                                    gcgcCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGaact  >  1:2545250/1‑93 (MQ=255)

                                                                                    gcgcCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGaact  >  2:868262/1‑93 (MQ=255)

AGCGCAAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACT  >  NC_000913/4601518‑4601695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTC  >  NC_000913/4601523‑4601707

AAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAG                                                                                            >  SRR4302535.1433005/1‑94 (MQ=60)

AAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAG                                                                                            <  SRR4302535.2203664/94‑1 (MQ=60)

AAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAG                                                                                            <  SRR4302535.2671505/94‑1 (MQ=60)

AAGGTACTGCGGCTATTAGGTAAAGGAGGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAG                                                                                            <  SRR4302535.1455475/94‑1 (MQ=60)

 AGGTACTGCGTCTATTAGGTAAAGGATGGAGCATCAACCAGATACCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGT                                                                                           <  SRR4302535.2107559/94‑1 (MQ=60)

 AGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGT                                                                                           <  SRR4302535.1515599/94‑1 (MQ=60)

  GGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTG                                                                                          >  SRR4302535.2389031/1‑94 (MQ=60)

  GGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTG                                                                                          >  SRR4302535.181640/1‑94 (MQ=60)

  GGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTG                                                                                          <  SRR4302535.3603954/94‑1 (MQ=60)

   GTACTGCCGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGC                                                                                         <  SRR4302535.3804157/94‑1 (MQ=60)

     ACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGA                                                                                       >  SRR4302535.4434806/1‑94 (MQ=60)

     ACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGA                                                                                       >  SRR4302535.1607721/1‑94 (MQ=60)

       TTCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATG                                                                                     <  SRR4302535.1750981/94‑1 (MQ=60)

       TGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATG                                                                                     <  SRR4302535.1857517/94‑1 (MQ=60)

        GCGGCTATTAGGGAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGC                                                                                    >  SRR4302535.2283853/1‑94 (MQ=60)

         CGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCG                                                                                   <  SRR4302535.1724235/94‑1 (MQ=60)

         CGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCG                                                                                   <  SRR4302535.689811/94‑1 (MQ=60)

          GGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGT                                                                                  >  SRR4302535.3723710/1‑94 (MQ=60)

          GGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGT                                                                                  >  SRR4302535.2198982/1‑94 (MQ=60)

           GCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGACC‑AAAAAACAGTGCGATGCGTC                                                                                 >  SRR4302535.4356919/1‑94 (MQ=60)

            CTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCG                                                                                >  SRR4302535.2387108/1‑94 (MQ=60)

             TATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGA                                                                               <  SRR4302535.1643209/94‑1 (MQ=60)

             TATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGA                                                                               >  SRR4302535.2312859/1‑94 (MQ=60)

             TATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGA                                                                               >  SRR4302535.1682643/1‑94 (MQ=60)

             TATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGA                                                                               <  SRR4302535.870553/94‑1 (MQ=60)

              ATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGAC                                                                              <  SRR4302535.4158947/94‑1 (MQ=60)

               TTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACT                                                                             <  SRR4302535.1511381/94‑1 (MQ=60)

                 AGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGG                                                                           >  SRR4302535.4159744/1‑94 (MQ=60)

                   GTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCA                                                                         >  SRR4302535.2992346/1‑94 (MQ=60)

                   GTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCA                                                                         >  SRR4302535.805595/1‑94 (MQ=60)

                    TAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAA                                                                        >  SRR4302535.4106854/1‑94 (MQ=60)

                     AAAGGATGGGGCATCAACCAGATAGCTTCATTTCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGGCGACTGGCAAT                                                                       <  SRR4302535.3123243/94‑1 (MQ=60)

                     AAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAAT                                                                       <  SRR4302535.3060090/94‑1 (MQ=60)

                     AAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAAT                                                                       <  SRR4302535.4618450/94‑1 (MQ=60)

                      AAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATT                                                                      <  SRR4302535.1269369/94‑1 (MQ=60)

                       AGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTC                                                                     >  SRR4302535.4073859/1‑94 (MQ=60)

                        GGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCA                                                                    <  SRR4302535.3006699/94‑1 (MQ=60)

                        GGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCA                                                                    >  SRR4302535.3058038/1‑94 (MQ=60)

                        AGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCA                                                                    <  SRR4302535.3465405/94‑1 (MQ=60)

                         GATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCAC                                                                   <  SRR4302535.4412864/94‑1 (MQ=60)

                          ATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGGCTGGCAATTCACA                                                                  <  SRR4302535.4508562/94‑1 (MQ=60)

                          ATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACA                                                                  >  SRR4302535.3608582/1‑94 (MQ=60)

                           TGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAG                                                                 <  SRR4302535.563556/94‑1 (MQ=60)

                            GGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGC                                                                >  SRR4302535.379594/1‑94 (MQ=60)

                             GGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCA                                                               <  SRR4302535.1200051/94‑1 (MQ=60)

                              GGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAA                                                              >  SRR4302535.1746490/1‑94 (MQ=60)

                               GCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAAC                                                             <  SRR4302535.4324520/94‑1 (MQ=60)

                               GCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAAC                                                             <  SRR4302535.2886392/94‑1 (MQ=60)

                               GCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAAC                                                             <  SRR4302535.2229275/94‑1 (MQ=60)

                                CATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACG                                                            <  SRR4302535.864611/94‑1 (MQ=60)

                                 ATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGC                                                           >  SRR4302535.1048087/1‑94 (MQ=60)

                                 ATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGC                                                           >  SRR4302535.3656920/1‑94 (MQ=60)

                                  TCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCT                                                          <  SRR4302535.1250934/94‑1 (MQ=60)

                                  TCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCT                                                          <  SRR4302535.754291/94‑1 (MQ=60)

                                  TCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCT                                                          <  SRR4302535.3177150/94‑1 (MQ=60)

                                   CAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTG                                                         >  SRR4302535.2001182/1‑94 (MQ=60)

                                   CAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTG                                                         >  SRR4302535.3407654/1‑94 (MQ=60)

                                    AACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGA                                                        <  SRR4302535.603710/94‑1 (MQ=60)

                                        AGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATG                                                    <  SRR4302535.3678459/94‑1 (MQ=60)

                                        AGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATG                                                    >  SRR4302535.3385868/1‑94 (MQ=60)

                                        AGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATG                                                    >  SRR4302535.1978128/1‑94 (MQ=60)

                                        AGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATG                                                    >  SRR4302535.320136/1‑94 (MQ=60)

                                        AGATAGCGTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATG                                                    <  SRR4302535.2082917/94‑1 (MQ=60)

                                          ATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTA                                                  <  SRR4302535.3475352/94‑1 (MQ=60)

                                          ATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTA                                                  >  SRR4302535.762733/1‑94 (MQ=60)

                                          ATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTA                                                  >  SRR4302535.628463/1‑94 (MQ=60)

                                           TAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTAT                                                 <  SRR4302535.146072/94‑1 (MQ=60)

                                           TAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTAT                                                 <  SRR4302535.2575508/94‑1 (MQ=60)

                                            AGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATG                                                <  SRR4302535.4110171/94‑1 (MQ=60)

                                            AGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATG                                                >  SRR4302535.4233803/1‑94 (MQ=60)

                                            AGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATG                                                <  SRR4302535.3826672/94‑1 (MQ=60)

                                             GCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGC                                               <  SRR4302535.4330271/94‑1 (MQ=60)

                                              CTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCA                                              >  SRR4302535.3895320/1‑94 (MQ=60)

                                              CTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCA                                              >  SRR4302535.3012858/1‑94 (MQ=60)

                                              CTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCA                                              >  SRR4302535.864214/1‑94 (MQ=60)

                                               TTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGNTGCGTCGACTGGCAATTCNNNGCAACGCTGAAATNNNNGNAT                                             >  SRR4302535.4421639/1‑94 (MQ=60)

                                               TTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCAT                                             <  SRR4302535.2770440/94‑1 (MQ=60)

                                               TTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCAT                                             >  SRR4302535.260096/1‑94 (MQ=60)

                                               TTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCAT                                             <  SRR4302535.2748473/94‑1 (MQ=60)

                                               TTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCAT                                             >  SRR4302535.3174720/1‑94 (MQ=60)

                                                TCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATG                                            <  SRR4302535.2139976/94‑1 (MQ=60)

                                                TCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATG                                            <  SRR4302535.4314266/94‑1 (MQ=60)

                                                TCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATG                                            >  SRR4302535.1793540/1‑94 (MQ=60)

                                                TCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATG                                            >  SRR4302535.3780241/1‑94 (MQ=60)

                                                 CATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGG                                           >  SRR4302535.4483979/1‑94 (MQ=60)

                                                 CATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGG                                           >  SRR4302535.2939563/1‑94 (MQ=60)

                                                 CATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGG                                           >  SRR4302535.2245286/1‑94 (MQ=60)

                                                  ATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGA                                          <  SRR4302535.869016/94‑1 (MQ=60)

                                                   TTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGAT                                         >  SRR4302535.1410833/1‑94 (MQ=60)

                                                   TTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGAT                                         <  SRR4302535.4166163/94‑1 (MQ=60)

                                                   TTGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGAT                                         <  SRR4302535.4511216/94‑1 (MQ=60)

                                                    TGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATA                                        <  SRR4302535.664873/94‑1 (MQ=60)

                                                    TGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATA                                        >  SRR4302535.1519606/1‑94 (MQ=60)

                                                    TGCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATA                                        <  SRR4302535.1744351/94‑1 (MQ=60)

                                                     GCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAA                                       <  SRR4302535.1066645/94‑1 (MQ=60)

                                                     GCTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAA                                       >  SRR4302535.1999829/1‑94 (MQ=60)

                                                      CTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAA                                      >  SRR4302535.1362789/1‑94 (MQ=60)

                                                      CTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAA                                      >  SRR4302535.1528713/1‑94 (MQ=60)

                                                      CTTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAA                                      >  SRR4302535.1820999/1‑94 (MQ=60)

                                                      CTTAAGAAAAGCAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAA                                      >  SRR4302535.2036062/1‑94 (MQ=60)

                                                       TTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAAT                                     <  SRR4302535.813437/94‑1 (MQ=60)

                                                       TTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAAT                                     <  SRR4302535.3151770/94‑1 (MQ=60)

                                                       TTAAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCCACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAAT                                     <  SRR4302535.3321704/94‑1 (MQ=60)

                                                         AAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAG                                   <  SRR4302535.405315/94‑1 (MQ=60)

                                                         AAGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAG                                   >  SRR4302535.2863114/1‑94 (MQ=60)

                                                          AGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGC                                  >  SRR4302535.1980362/1‑94 (MQ=60)

                                                          AGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGC                                  <  SRR4302535.2068662/94‑1 (MQ=60)

                                                          AGAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGC                                  >  SRR4302535.3917292/1‑94 (MQ=60)

                                                           GAAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCG                                 >  SRR4302535.4435988/1‑94 (MQ=60)

                                                            AAAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGC                                <  SRR4302535.433987/94‑1 (MQ=60)

                                                             AAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCG                               >  SRR4302535.981383/1‑94 (MQ=60)

                                                             AAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCG                               >  SRR4302535.2547610/1‑94 (MQ=60)

                                                             AAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCG                               >  SRR4302535.4326457/1‑94 (MQ=60)

                                                             AAAGTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCG                               <  SRR4302535.2997529/94‑1 (MQ=60)

                                                                GTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAG                            >  SRR4302535.1702392/1‑94 (MQ=60)

                                                                GTAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAG                            >  SRR4302535.1233652/1‑94 (MQ=60)

                                                                ATAATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAG                            <  SRR4302535.3161181/94‑1 (MQ=60)

                                                                  AATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGG                          >  SRR4302535.2079655/1‑94 (MQ=60)

                                                                  AATAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGG                          >  SRR4302535.3956868/1‑94 (MQ=60)

                                                                    TAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTG                        <  SRR4302535.1083035/94‑1 (MQ=60)

                                                                    TAAAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTG                        >  SRR4302535.4013772/1‑94 (MQ=60)

                                                                      AAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCA                      <  SRR4302535.3543098/94‑1 (MQ=60)

                                                                      AAACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCA                      >  SRR4302535.2501770/1‑94 (MQ=60)

                                                                       AACTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAA                     >  SRR4302535.4432790/1‑94 (MQ=60)

                                                                         CTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGCTAAATAGCGCGCAGGGTGCAAGA                   >  SRR4302535.2556420/1‑94 (MQ=60)

                                                                         CTATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGA                   >  SRR4302535.260772/1‑94 (MQ=60)

                                                                          TATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAG                  <  SRR4302535.2635877/94‑1 (MQ=60)

                                                                          TATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAG                  <  SRR4302535.455190/94‑1 (MQ=60)

                                                                          TATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAG                  >  SRR4302535.2415780/1‑94 (MQ=60)

                                                                          TATCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAG                  <  SRR4302535.2927209/94‑1 (MQ=60)

                                                                            TCAGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAA                <  SRR4302535.2425673/94‑1 (MQ=60)

                                                                              AGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACT              >  SRR4302535.2921602/1‑94 (MQ=60)

                                                                              AGCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACT              >  SRR4302535.2563574/1‑94 (MQ=60)

                                                                               GCGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTT             <  SRR4302535.3701482/94‑1 (MQ=60)

                                                                                CGCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTA            >  SRR4302535.808514/1‑94 (MQ=60)

                                                                                 GCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAA           <  SRR4302535.3880976/94‑1 (MQ=60)

                                                                                 GCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAA           >  SRR4302535.2688253/1‑94 (MQ=60)

                                                                                 GCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAA           <  SRR4302535.1625148/94‑1 (MQ=60)

                                                                                 GCCC‑AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAA           <  SRR4302535.137286/94‑1 (MQ=60)

                                                                                   CCCAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAAC          >  SRR4302535.3053934/1‑94 (MQ=60)

                                                                                   CCCAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAAC          >  SRR4302535.232747/1‑94 (MQ=60)

                                                                                    CCAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACT         <  SRR4302535.3916682/94‑1 (MQ=60)

                                                                                    CCAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGCGCAAGAGAACTTAACT         >  SRR4302535.1877762/1‑94 (MQ=60)

                                                                                     CAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTT        >  SRR4302535.1939979/1‑94 (MQ=60)

                                                                                     CAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTT        >  SRR4302535.4561470/1‑94 (MQ=60)

                                                                                     CAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTT        >  SRR4302535.649548/1‑94 (MQ=60)

                                                                                     CAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGAATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTC        >  SRR4302535.2725934/1‑94 (MQ=60)

                                                                                      AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTG       >  SRR4302535.1236064/1‑94 (MQ=60)

                                                                                      AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTG       <  SRR4302535.1749401/94‑1 (MQ=60)

                                                                                      AAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTG       <  SRR4302535.3457400/94‑1 (MQ=60)

                                                                                       AAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGTAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGC      >  SRR4302535.3322787/1‑94 (MQ=60)

                                                                                       AAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGC      >  SRR4302535.838315/1‑94 (MQ=60)

                                                                                       AAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGC      >  SRR4302535.2515621/1‑94 (MQ=60)

                                                                                        AAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCC     >  SRR4302535.4175926/1‑94 (MQ=60)

                                                                                        AAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCC     >  SRR4302535.1817604/1‑94 (MQ=60)

                                                                                         AAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCT    <  SRR4302535.2259175/94‑1 (MQ=60)

                                                                                         AAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCT    <  SRR4302535.2822729/94‑1 (MQ=60)

                                                                                           ACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTC  <  SRR4302535.4161019/94‑1 (MQ=60)

AAGGTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCCCAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTC  >  NC_000913/4601523‑4601707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`