Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,603,784 |
(G)8→9 |
noncoding (72/87 nt) |
leuP ← |
tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,603,776 | 1 | . | G | 84.9%
| 307.4
/ 59.5
| 127 | noncoding (80/87 nt) | leuP | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (17/2); new base G (77/30); total (95/32) |
| Fisher's exact test for biased strand distribution p-value = 1.53e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.85e-01 |
Only 100 of 162 total aligned reads displayed.
AAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑GG‑GGGGGGACT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAG > NC_000913/4603684‑4603865
|
aaGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGa < 1:4237917/93‑1 (MQ=255)
aaGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGa < 2:4620762/93‑1 (MQ=255)
aaGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGa < 1:1530329/93‑1 (MQ=255)
aGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑g < 2:3317596/93‑1 (MQ=255)
aGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑g > 1:2050751/1‑93 (MQ=255)
ggACACTAACCCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg < 1:37362/93‑1 (MQ=255)
ggACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg < 2:4009804/93‑1 (MQ=255)
acacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gg < 1:1123706/93‑1 (MQ=255)
acacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gg > 2:2540244/1‑93 (MQ=255)
acacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gg < 2:3963921/93‑1 (MQ=255)
acacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gg > 2:3427790/1‑93 (MQ=255)
cacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑ggg < 2:1055137/93‑1 (MQ=255)
acTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gggg > 2:2608382/1‑93 (MQ=255)
acTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gggg > 2:1476269/1‑93 (MQ=255)
cTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gggtg > 1:2640472/1‑91 (MQ=255)
cTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑ggggg < 2:26743/93‑1 (MQ=255)
cTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑ggggg > 1:884109/1‑93 (MQ=255)
tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gggggg > 1:4457765/1‑93 (MQ=255)
aaCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑ggggggg > 1:806850/1‑92 (MQ=255)
aaCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑ggggggg < 2:1215996/93‑2 (MQ=255)
acCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑gg‑gggggggggt > 1:1095713/1‑89 (MQ=255)
aGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAAcc < 1:2841457/93‑1 (MQ=37)
tAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAAccccc < 2:625287/93‑1 (MQ=38)
tAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TCAAccccc > 2:648009/1‑93 (MQ=38)
aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCa < 2:695475/93‑1 (MQ=38)
gcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACgc > 1:1036462/1‑92 (MQ=39)
gcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGt > 1:3314533/1‑93 (MQ=255)
gcgTCTACCAATCCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCCCGTTTGGTGGGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGt < 2:4441447/93‑1 (MQ=38)
cgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTc < 1:3559278/93‑1 (MQ=39)
gTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTcc > 1:97255/1‑93 (MQ=255)
gTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTcc > 2:2366750/1‑93 (MQ=255)
gTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTcc > 1:983041/1‑93 (MQ=255)
gTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTcc > 2:3089501/1‑93 (MQ=255)
gTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTcc < 1:1778288/93‑1 (MQ=39)
tCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGCTGCGA‑‑GGTGCGGGGGGT‑TGAACCCCCACGTCCg > 1:363312/1‑93 (MQ=38)
cTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAAACCCCACGTCCga > 2:2902517/1‑92 (MQ=38)
aCCAATTCCGCCCCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTaa < 1:1882379/93‑1 (MQ=38)
ccAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGa > 1:880243/1‑93 (MQ=255)
cAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGa > 2:2162199/1‑93 (MQ=255)
cAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGaa > 2:1644148/1‑93 (MQ=255)
aaTTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGaa > 1:234276/1‑93 (MQ=255)
aaTTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGaaa > 2:2774573/1‑92 (MQ=255)
aaTTCCGCCACCGTCGCACATTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGaa < 2:4600366/93‑1 (MQ=37)
cACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAacc > 1:4166724/1‑92 (MQ=37)
cACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAaca > 2:1651138/1‑93 (MQ=255)
cACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAacac > 2:1891705/1‑93 (MQ=255)
aCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACAcc > 1:318407/1‑93 (MQ=255)
cTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCt < 2:1299143/93‑1 (MQ=255)
cacacaGTCATTCTGCTTTTTTTGATTGCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGaa < 1:2313467/91‑1 (MQ=18)
cGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGaa < 2:4219172/93‑1 (MQ=255)
cGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGaa < 2:4683192/93‑1 (MQ=255)
gCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAg > 2:4403130/1‑93 (MQ=255)
acaGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAC‑GG‑GGGGGGGGTGTGAACCCCCACCTCCGTAAGAACACTAACACCTaaatc > 1:2516554/1‑91 (MQ=255)
caGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCt < 1:1209157/93‑1 (MQ=25)
caGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGGT‑TGAACCCCCACGTCCGTAAGAAAACTAACACCTGAAGCTa > 2:651037/1‑93 (MQ=21)
caGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTa > 1:2884865/1‑93 (MQ=255)
caGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGAT‑TGAACCCCCACGGCCGTAAGAACACTAACACCTGAAGATa > 2:1326549/1‑93 (MQ=21)
aGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAg < 2:719635/93‑1 (MQ=255)
gTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgg > 1:512311/1‑92 (MQ=21)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGGAAGAACACTAACACCTGAAGCTAgcg > 1:4676766/1‑93 (MQ=21)
cATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAAAACTAACACCTGAAGCTaaccg > 1:3837748/1‑89 (MQ=21)
aTCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGcgcg > 2:3204636/1‑93 (MQ=255)
aTCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGcgcg > 1:3352644/1‑93 (MQ=255)
aTCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAACTAGcgcg > 2:1537465/1‑93 (MQ=21)
tCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGt > 1:4180217/1‑93 (MQ=255)
cTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TTAAACCCCACGGCCGCTAAAAAACTTAAAACTGGAGCTAGCGCGTc > 1:1128775/1‑93 (MQ=16)
cTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAGCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTc > 2:826572/1‑93 (MQ=18)
cTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTc > 1:557116/1‑93 (MQ=255)
ttACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCt > 2:2151808/1‑93 (MQ=255)
ttACTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCt > 1:1434715/1‑93 (MQ=255)
ttcTTTTTTTGTTATGACGTCGTTCGGTTGGAG‑GG‑GGGGGGGCG‑TGAACCCCCGCGTCCGTAAGAACACTAGCGCCTGAAGCTAGCGCGTCTa < 2:708338/91‑1 (MQ=9)
aCTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCCCGTCCCTAAGAACACTAACACCTGAAGCTAGCGCCTCTAc > 1:1564000/1‑93 (MQ=18)
aCTTTTTTTGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAc > 2:4523006/1‑93 (MQ=255)
tttttttGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCa > 2:970469/1‑93 (MQ=255)
tttttttGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCa > 1:4049608/1‑93 (MQ=255)
tttttGATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAAt < 1:2381076/93‑1 (MQ=255)
tGATATCGCCTCGTTTGGTGCAA‑‑GG‑GGGGGGACT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc > 1:794469/1‑93 (MQ=255)
tGAAATCGCCTCGTTTGGGGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCg < 2:3674605/93‑1 (MQ=17)
gATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGCACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc > 1:1157610/1‑93 (MQ=14)
gATATCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGCCCGTAAGAACACTAACACCTGAAGCTAGGGCGTCTAACAATTCCGc > 2:4674526/1‑93 (MQ=17)
tatCGCCTCGTTTGGTGCGAGGGG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGcc > 1:2273749/1‑93 (MQ=14)
tatCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTAAAGCTAGCGCGTCTACCAATTCCGccc > 2:2464440/1‑92 (MQ=14)
tCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAct > 2:3814161/1‑92 (MQ=14)
tCGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc > 1:24837/1‑93 (MQ=255)
cGCCTGGTTGGGTGGGGG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCt < 2:1734414/93‑1 (MQ=11)
cGCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCt < 1:4398499/93‑1 (MQ=255)
gCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCtt > 1:1824097/1‑93 (MQ=255)
gCCTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCtt > 2:7011/1‑93 (MQ=255)
cTCGTTTGGTGCGAGGGG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTc > 1:435062/1‑93 (MQ=14)
cTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg < 2:1579505/93‑1 (MQ=255)
cTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg > 1:826919/1‑93 (MQ=255)
cTCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGCCTACCAATTCCGCCACCTTcc > 1:2270793/1‑92 (MQ=14)
tCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTTCGc > 1:1229480/1‑93 (MQ=11)
tCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc > 2:3922813/1‑93 (MQ=255)
tCGTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCCCCACCTTCGc > 2:1275274/1‑93 (MQ=11)
gTTTGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcca > 2:1986628/1‑92 (MQ=11)
tttGGTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCa > 1:2011341/1‑93 (MQ=255)
gTGCGAG‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGc < 1:3496064/93‑1 (MQ=255)
gTGCGA‑‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg < 2:1092833/93‑1 (MQ=255)
gCGA‑‑GG‑GGGGGGGCT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg > 1:3614943/1‑93 (MQ=255)
|
AAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGA‑‑GG‑GGGGGGACT‑TGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAG > NC_000913/4603684‑4603865
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGACTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGT > NC_000913/4603691‑4603877
|
CTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGG > SRR4302535.4488337/1‑94 (MQ=60)
TAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGG > SRR4302535.812508/1‑94 (MQ=60)
ACCCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGggc < SRR4302535.3424051/94‑4 (MQ=60)
CACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGgggt > SRR4302535.1103510/1‑90 (MQ=60)
CTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGggcttga > SRR4302535.4197067/1‑87 (MQ=60)
AAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACC < SRR4302535.3003470/94‑1 (MQ=60)
AGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCC < SRR4302535.2861609/94‑1 (MQ=60)
CTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCC < SRR4302535.674743/94‑1 (MQ=60)
CGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGT > SRR4302535.3337592/1‑94 (MQ=60)
CGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGC > SRR4302535.1043822/1‑94 (MQ=60)
CGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCC > SRR4302535.990024/1‑94 (MQ=60)
CGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCC < SRR4302535.1853650/94‑1 (MQ=60)
CGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCC < SRR4302535.3583961/94‑1 (MQ=60)
CGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCC > SRR4302535.97945/1‑94 (MQ=60)
GTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCG > SRR4302535.4196057/1‑94 (MQ=60)
GTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCG < SRR4302535.1791165/94‑1 (MQ=60)
GTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGCTGC‑GA‑‑GGTGCGGGGGG‑‑TTG‑AACCCCCACGTCCG > SRR4302535.365816/1‑94 (MQ=60)
ACCAATTCCGCCCCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAG < SRR4302535.1895946/94‑1 (MQ=60)
ACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGA > SRR4302535.886475/1‑94 (MQ=60)
ACCAATCCCGCCACTTCCGCACAGTCATCTTTCTTTTTTTAATATCGCCTCGTTTGGTGG‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAG < SRR4302535.2152816/94‑1 (MQ=45)
CAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAA > SRR4302535.235892/1‑94 (MQ=60)
ATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACA > SRR4302535.2248704/1‑94 (MQ=60)
TCCGCCGCCTTCGCACACTCATCTTATGTTTTTTGATATCGCCTCGTTTGGTGCGGG‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACT < SRR4302535.2954103/94‑1 (MQ=54)
TCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTA < SRR4302535.979868/94‑1 (MQ=60)
CCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTA > SRR4302535.892743/1‑94 (MQ=60)
CCCACCTTCGCACAGTCATCTTCCTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAAC < SRR4302535.2358751/94‑1 (MQ=60)
CCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACC > SRR4302535.4195252/1‑94 (MQ=60)
CCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACA > SRR4302535.1548997/1‑94 (MQ=60)
CACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACC > SRR4302535.320614/1‑94 (MQ=60)
ACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAAAACTAAAACCT > SRR4302535.831733/1‑94 (MQ=60)
cccctcccctcttgtattttattttttttcttatcccctgtttcggggcgagGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACAC < SRR4302535.3249642/42‑1 (MQ=21)
cacacagtcattctgCTTTTTTTGATTGCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAG < SRR4302535.2330022/79‑1 (MQ=38)
CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGC > SRR4302535.854587/1‑94 (MQ=60)
cgcactatcttttttttttttttgatcgcgccgtttttggcgggggGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAG < SRR4302535.3014436/48‑1 (MQ=22)
CACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GACGGG‑‑‑GGGGGGGTGTG‑AACCCCCACCTCCGTAAGAACACTAACACCTaaatc > SRR4302535.2534692/1‑89 (MQ=60)
ACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTA > SRR4302535.2905275/1‑94 (MQ=60)
CAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTA < SRR4302535.1217845/94‑1 (MQ=60)
CAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAG > SRR4302535.1129636/1‑94 (MQ=60)
CAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAG > SRR4302535.4362046/1‑94 (MQ=60)
AGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGG > SRR4302535.515891/1‑94 (MQ=60)
GTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCG > SRR4302535.4397618/1‑94 (MQ=60)
GTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGGAAGAACACTAACACCTGAAGCTAGCG > SRR4302535.4708332/1‑94 (MQ=60)
TCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAAAACTAACACCTGAAGCTAaccg > SRR4302535.3864205/1‑90 (MQ=60)
CATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCG > SRR4302535.3375994/1‑94 (MQ=60)
ATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGT > SRR4302535.2402543/1‑94 (MQ=60)
ATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGT > SRR4302535.4208825/1‑94 (MQ=60)
ATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGC > SRR4302535.4005036/1‑94 (MQ=60)
TCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTC > SRR4302535.561018/1‑94 (MQ=60)
TCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGggctttaaaccccacggccgctaaaaaacttaaaactggagctagcgcgtc > SRR4302535.1136836/1‑43 (MQ=60)
TCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGgcctgaatccccgcgaccgtgacgacaattacacctgaagctagcttggct > SRR4302535.3492930/1‑43 (MQ=60)
TCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGGCCGTAAGAAAACTAAAACCTTGAGCTAGCGCGTCT > SRR4302535.2724249/1‑94 (MQ=60)
CTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCT > SRR4302535.1444960/1‑94 (MQ=60)
tttTTTTTTTGATATCGCCTCGTTTGGTTC‑GAG‑GG‑‑‑GGGGGGGTTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAC < SRR4302535.489069/91‑1 (MQ=48)
TACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTT‑AACCCCCACGGCCGTTAGAAAACTAAAACCTGAAGgaagcgccgcttc > SRR4302535.570478/1‑81 (MQ=45)
TACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCCCGTCCCTAAGAACACTAACACCTGAAGCTAGCGCCTCTAC > SRR4302535.1575288/1‑94 (MQ=57)
TACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAC > SRR4302535.3640129/1‑94 (MQ=60)
ACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTT‑AAACCCCACGTCCCTAATAACACTAACCCCTGAAagaagaccgtctacc > SRR4302535.1394918/1‑79 (MQ=42)
tattttttttattttgccttgtttgggggggggGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAC < SRR4302535.2210073/61‑1 (MQ=9)
CTTTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCA > SRR4302535.4077332/1‑94 (MQ=59)
CTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGGTTGAAACCCCCACG‑CCGGAAGAAAACCAAAACCCGAAGCTAACGCGTCTACCAA > SRR4302535.322885/1‑94 (MQ=32)
tttttttttttttgccctgtttgggggggggGG‑‑‑GGGGGGGCTTG‑ACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCA < SRR4302535.2488979/63‑1 (MQ=8)
TTTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAAT < SRR4302535.4505820/94‑1 (MQ=59)
TTTTTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATT < SRR4302535.2398175/94‑1 (MQ=56)
TTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AAAACCCAAGTCCGTAAGAACACTAAaacatggaggtagcgcggctatcaatttg > SRR4302535.1373800/1‑65 (MQ=60)
TTGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCG < SRR4302535.3607681/94‑1 (MQ=45)
TTGATATCGCCTCGTTTGGTGC‑AA‑‑GG‑‑‑GGGGGGACTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGC > SRR4302535.800050/1‑94 (MQ=50)
TGATATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGCACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGC > SRR4302535.1165888/1‑94 (MQ=29)
ATATCGCCTCGTTTGGTGC‑GAGGGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCC > SRR4302535.2289972/1‑94 (MQ=39)
ATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAC > SRR4302535.3476289/1‑94 (MQ=43)
TATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAAAACCTAAAGCTAGCGCGCCTACCAATTCCCCCAC > SRR4302535.1182514/1‑94 (MQ=29)
ATCGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACC > SRR4302535.25030/1‑94 (MQ=35)
ATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCT > SRR4302535.2303429/1‑94 (MQ=38)
CGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT > SRR4302535.1837267/1‑94 (MQ=30)
CGCCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT < SRR4302535.4428605/94‑1 (MQ=33)
CCTCGTTTGGTGC‑GAGGGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTC > SRR4302535.438092/1‑94 (MQ=25)
CCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCG > SRR4302535.832708/1‑94 (MQ=23)
CCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCC > SRR4302535.2511294/1‑94 (MQ=26)
CCTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGCCTACCAATTCCGCCACCTTCC > SRR4302535.2286985/1‑94 (MQ=24)
CTCGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTTCGC > SRR4302535.1238264/1‑94 (MQ=22)
CGTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCC > SRR4302535.1913608/1‑94 (MQ=21)
GTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCA > SRR4302535.2025835/1‑94 (MQ=21)
GTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCA > SRR4302535.3160849/1‑94 (MQ=21)
GTTTGGTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCCTCGCCCA > SRR4302535.1335269/1‑94 (MQ=20)
tggcgcgggGG‑‑‑GGGGGGGCTTG‑ACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTG < SRR4302535.3505693/85‑1 (MQ=27)
GTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCG > SRR4302535.115870/1‑94 (MQ=31)
GTGC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCG < SRR4302535.3520361/94‑1 (MQ=31)
TGC‑GA‑‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAG > SRR4302535.3640003/1‑94 (MQ=38)
GC‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAG < SRR4302535.3002239/94‑1 (MQ=36)
gcggggGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCCCAGTGCGA < SRR4302535.2264799/88‑1 (MQ=35)
C‑GAG‑GG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGC < SRR4302535.4351018/94‑1 (MQ=39)
gagGG‑‑‑GGGGGGGCTTT‑AACCCCCACGTCCGTAAGAACACTAACACCTCAAGCTAGCGCGCCTACCTATTCCGCCACCTTCGCCCAGTGCCAGCA > SRR4302535.3549474/4‑94 (MQ=60)
gagGG‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCA > SRR4302535.2958280/4‑94 (MQ=43)
G‑‑‑GGGGGGGCTTG‑ATCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATAT < SRR4302535.533465/94‑1 (MQ=51)
G‑‑‑GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATAT < SRR4302535.220299/94‑1 (MQ=53)
GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATC < SRR4302535.1456302/94‑1 (MQ=55)
GGGGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATA > SRR4302535.1487330/1‑94 (MQ=52)
GGGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAA > SRR4302535.3996685/1‑94 (MQ=60)
GGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAC < SRR4302535.1084014/94‑1 (MQ=60)
GGGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAC < SRR4302535.4717000/94‑1 (MQ=60)
GGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACG < SRR4302535.2604200/94‑1 (MQ=60)
GGGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACG < SRR4302535.4393876/94‑1 (MQ=60)
GGCTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGT > SRR4302535.4486752/1‑94 (MQ=60)
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CTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑‑GG‑‑‑GGGGGGACTTG‑AACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGT > NC_000913/4603691‑4603877
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
