Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
673,104 |
T→C |
K301K (AAA→AAG) |
leuS ← |
leucine tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 673,104 | 0 | T | C | 99.7%
| 940.3
/ NA
| 296 | K301K (AAA→AAG) | leuS | leucine tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (149/146); total (149/147) |
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 321 total aligned reads displayed.
GCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCTTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGC > NC_000913/673014‑673193
|
gCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCctt < 2:1291380/93‑1 (MQ=255)
gCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCctt > 1:2728751/1‑93 (MQ=255)
cGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCctttt < 1:926649/93‑1 (MQ=255)
cGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCctttt < 1:1880749/93‑1 (MQ=255)
cGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCctttt < 2:6660128/93‑1 (MQ=255)
gTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCcttttt > 2:3357019/1‑93 (MQ=255)
tACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTtc > 1:8465333/1‑93 (MQ=255)
tACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTtc > 2:3986337/1‑93 (MQ=255)
cTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTtctc > 2:6436573/1‑93 (MQ=255)
ccATCAATACGAAGTTTGCTGCCCAAGCGGGAATTTCTTCGCCAGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCa < 1:5729488/93‑1 (MQ=255)
cATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCAt > 2:848009/1‑93 (MQ=255)
cATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCAt < 2:2975616/93‑1 (MQ=255)
cATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCAt < 2:5168568/93‑1 (MQ=255)
atgcGAAGTTTGCCGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCAtcgtcg < 2:3785089/90‑1 (MQ=255)
tACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGc > 2:3188904/1‑93 (MQ=255)
cGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCa > 1:2416478/1‑93 (MQ=255)
gAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCAt > 1:7219570/1‑93 (MQ=255)
gAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCAt > 1:6015553/1‑93 (MQ=255)
gAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCAt > 2:7473230/1‑93 (MQ=255)
aaGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCAtt > 2:6533785/1‑93 (MQ=255)
aaGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCAtt > 1:9754816/1‑93 (MQ=255)
aGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCAttt < 2:2444628/93‑1 (MQ=255)
aGTTTGCTGCCCAAACGGGAATTTCCTCGCCCGTTAATTGGTGAACCGCTTTAAAGCCAGTCTCAAC‑GCCCTTTTTCTCCATCGTCGCCAttt < 2:3475340/93‑1 (MQ=255)
tttGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCa < 1:664734/93‑1 (MQ=255)
tttGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCa > 1:7109143/1‑93 (MQ=255)
tgctgcCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGc < 1:153529/93‑1 (MQ=255)
gctgcCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGCCGCCATTTCAGCt < 2:7259968/93‑1 (MQ=255)
gctgcCCAAAAGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCt < 1:8591947/93‑1 (MQ=255)
ctgcCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCtt > 2:5277224/1‑93 (MQ=255)
gcCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCg > 2:742927/1‑93 (MQ=255)
aaCGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAAc > 1:1101163/1‑93 (MQ=255)
cGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACtt > 2:4621083/1‑93 (MQ=255)
gggAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACttt > 1:5212884/1‑93 (MQ=255)
ggAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTg > 2:9598491/1‑93 (MQ=255)
ggAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTg > 1:6213332/1‑93 (MQ=255)
gAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTgg < 2:2106345/93‑1 (MQ=255)
aaTTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGgt > 2:9408735/1‑93 (MQ=255)
aTTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGgtg > 2:5911315/1‑93 (MQ=255)
aTTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGgtg > 2:9206877/1‑93 (MQ=255)
aTTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGgtg > 1:6491065/1‑93 (MQ=255)
tcttcGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTa > 2:9153328/1‑93 (MQ=255)
cttcGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTAc < 2:760975/93‑1 (MQ=255)
cttcGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTAc > 2:1158307/1‑93 (MQ=255)
cttcGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTAc < 1:8555922/93‑1 (MQ=255)
ttcGCCCGTTAATGGGTGAACCGCTTTAAAGCGAGTATCGCC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACg > 1:2172931/1‑93 (MQ=255)
ttcGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACg < 1:3492225/93‑1 (MQ=255)
tcGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACgg > 1:2848651/1‑93 (MQ=255)
gCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCa < 1:5078507/93‑1 (MQ=255)
ccGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCAtt > 2:4888175/1‑93 (MQ=255)
ccGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCAtt < 2:1378405/93‑1 (MQ=255)
ccGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCAtt > 2:15424/1‑93 (MQ=255)
ccGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCAtt > 1:3251347/1‑93 (MQ=255)
ccGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTGTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCAtt < 1:6005047/93‑1 (MQ=255)
cGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTc > 2:4500186/1‑93 (MQ=255)
gTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCg < 2:4591911/93‑1 (MQ=255)
gTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCg > 2:5554313/1‑93 (MQ=255)
ttAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGt > 2:8790661/1‑93 (MQ=255)
ttAATGGGGGAACCGCTTTAAAGGCAGTTTTGGCGGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCg < 2:361856/93‑1 (MQ=255)
tAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTc < 1:3555793/93‑1 (MQ=255)
aaTGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCa > 1:4426041/1‑93 (MQ=255)
ggTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATaa < 1:4104251/93‑1 (MQ=255)
ggTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATaa > 1:3060563/1‑93 (MQ=255)
gTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATaaa > 2:7640993/1‑93 (MQ=255)
gTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATaaa < 1:9906225/93‑1 (MQ=255)
gTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATaaa < 2:8332868/93‑1 (MQ=255)
gTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATaaa < 1:936115/93‑1 (MQ=255)
gTGAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATaaa < 2:4006642/93‑1 (MQ=255)
gAACCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAgg > 2:2853763/1‑93 (MQ=255)
aaCCGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGgc < 2:6135240/93‑1 (MQ=255)
cGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGgccgc < 1:3945662/93‑1 (MQ=255)
cGCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGgccgc < 1:9534617/93‑1 (MQ=255)
gCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGgccgcc < 2:6839317/93‑1 (MQ=255)
gCTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGgccgcc < 2:8088943/93‑1 (MQ=255)
cTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCa > 1:4775168/1‑93 (MQ=255)
cTTTAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCa > 1:7590251/1‑93 (MQ=255)
tttAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGACATTCGTCAATAAAGGCCGCCAg > 1:1073203/1‑93 (MQ=255)
ttAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGt > 2:5043927/1‑93 (MQ=255)
ttAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGt > 2:6264188/1‑93 (MQ=255)
ttAAAGCCAGGATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGt < 2:3039291/93‑1 (MQ=255)
tAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGtt > 1:7471493/1‑93 (MQ=255)
tAAAGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGtt > 2:1902979/1‑93 (MQ=255)
aaaGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTc < 1:7342761/93‑1 (MQ=255)
aaGCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCa < 1:1609207/93‑1 (MQ=255)
gCCAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAgg > 2:5528418/1‑93 (MQ=255)
ccAGTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGa < 1:5624213/93‑1 (MQ=255)
cAGTATCGAC‑GCCCTTTTTCTCGATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGat > 1:6947666/1‑93 (MQ=255)
gTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGatta < 2:4308190/93‑1 (MQ=255)
gTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGatta < 2:1818609/93‑1 (MQ=255)
gTATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACCTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGatta > 1:4211186/1‑93 (MQ=255)
tATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGattat < 2:7845537/93‑1 (MQ=255)
tATCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGattat > 2:6019239/1‑93 (MQ=255)
aTCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGattatt < 2:227326/93‑1 (MQ=255)
aTCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGattatt < 1:7430809/93‑1 (MQ=255)
tCGAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTAttt < 1:7683505/93‑1 (MQ=255)
tCGAC‑GCACTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTAttt > 1:8033607/1‑93 (MQ=255)
gAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTc > 2:2029222/1‑93 (MQ=255)
gAC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTc < 1:4661951/93‑1 (MQ=255)
aC‑GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTcc < 1:6360312/93‑1 (MQ=255)
gCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTccgc < 1:1470425/93‑1 (MQ=255)
gCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTccgc < 2:8563400/93‑1 (MQ=255)
|
GCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGAC‑GCCTTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGC > NC_000913/673014‑673193
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTGCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCTTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCT > NC_000913/673011‑673197
|
CGTGCCTTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCC < SRR4302540.6991770/94‑1 (MQ=60)
CGTGCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCC < SRR4302540.3778608/94‑1 (MQ=60)
TGCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTT < SRR4302540.9143006/94‑1 (MQ=60)
TGCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTT > SRR4302540.2758183/1‑94 (MQ=60)
TGCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTT < SRR4302540.8385491/94‑1 (MQ=60)
TGCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTT < SRR4302540.8385492/94‑1 (MQ=60)
GCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTT < SRR4302540.6410491/94‑1 (MQ=60)
CGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTT < SRR4302540.7431107/94‑1 (MQ=60)
CGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTT < SRR4302540.1901344/94‑1 (MQ=60)
CGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTT < SRR4302540.936406/94‑1 (MQ=60)
GTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTC > SRR4302540.8563619/1‑94 (MQ=60)
GTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTC > SRR4302540.7222837/1‑94 (MQ=60)
ACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTC > SRR4302540.3528250/1‑94 (MQ=60)
CTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCC > SRR4302540.1524489/1‑94 (MQ=60)
CTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCC > SRR4302540.3545003/1‑94 (MQ=60)
CTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCC > SRR4302540.8373575/1‑94 (MQ=60)
CTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCC < SRR4302540.2090709/94‑1 (MQ=60)
TCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCAACGCCCTTTTTCTCCA > SRR4302540.4180011/1‑94 (MQ=60)
CCATCAATACGAAGTTTGCTGCCCAAGCGGGAATTTCTTCGCCAGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCAT < SRR4302540.5792581/94‑1 (MQ=60)
CCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCAT < SRR4302540.3180359/94‑1 (MQ=60)
CCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCAT < SRR4302540.27917/94‑1 (MQ=60)
CATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATC > SRR4302540.10016004/1‑94 (MQ=60)
CATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATC < SRR4302540.7059409/94‑1 (MQ=60)
AATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCG < SRR4302540.6676824/94‑1 (MQ=60)
AATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCG > SRR4302540.7726231/1‑94 (MQ=60)
TACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCC < SRR4302540.8152376/94‑1 (MQ=60)
ACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCA > SRR4302540.2442519/1‑94 (MQ=60)
CGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCAT > SRR4302540.7300039/1‑94 (MQ=60)
CGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCAT > SRR4302540.7413916/1‑94 (MQ=60)
CGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCAT > SRR4302540.6082263/1‑94 (MQ=60)
GAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATT > SRR4302540.9869261/1‑94 (MQ=60)
AAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTT < SRR4302540.2985042/94‑1 (MQ=60)
AAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATCT > SRR4302540.1546757/1‑94 (MQ=60)
GTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCA > SRR4302540.7188261/1‑94 (MQ=60)
TTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAG < SRR4302540.4805923/94‑1 (MQ=60)
TTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAG < SRR4302540.671863/94‑1 (MQ=60)
TTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAG > SRR4302540.2472019/1‑94 (MQ=60)
TGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCT < SRR4302540.155104/94‑1 (MQ=60)
TCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTT < SRR4302540.7527997/94‑1 (MQ=60)
GCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTT < SRR4302540.8691827/94‑1 (MQ=60)
GCTGCCCAAAAGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTT < SRR4302540.8691829/94‑1 (MQ=60)
TGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGGCGCCATTTCAGCTTCG > SRR4302540.5382227/1‑94 (MQ=60)
GCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGG > SRR4302540.7271959/1‑94 (MQ=60)
CCCAAACGGGAATTTCTTCGTCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGATGCCCTTTTTCTCCCTCGTCGCCATTTCAGCTTCGGC > SRR4302540.540603/1‑94 (MQ=60)
CAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAA < SRR4302540.9923862/94‑1 (MQ=60)
CAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAA < SRR4302540.7120254/94‑1 (MQ=60)
CAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAA > SRR4302540.653957/1‑94 (MQ=60)
AAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAAT > SRR4302540.2576210/1‑94 (MQ=60)
AAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAAC > SRR4302540.1112508/1‑94 (MQ=60)
AAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAAC < SRR4302540.5029461/94‑1 (MQ=60)
AAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAAC > SRR4302540.1091444/1‑94 (MQ=60)
AAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAAC > SRR4302540.4238436/1‑94 (MQ=60)
AACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTCTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACT < SRR4302540.2158409/94‑1 (MQ=60)
CGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTT > SRR4302540.5269687/1‑94 (MQ=60)
GGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTG < SRR4302540.8628464/94‑1 (MQ=60)
GGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTG > SRR4302540.4145518/1‑94 (MQ=60)
GGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTG > SRR4302540.6282466/1‑94 (MQ=60)
GAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGT < SRR4302540.8901833/94‑1 (MQ=60)
AATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTT > SRR4302540.6563254/1‑94 (MQ=60)
AATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTG > SRR4302540.6563253/1‑94 (MQ=60)
ATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGT > SRR4302540.579163/1‑94 (MQ=60)
ATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGT > SRR4302540.4422697/1‑94 (MQ=60)
ATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGT < SRR4302540.4757532/94‑1 (MQ=60)
TTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTT < SRR4302540.3531903/94‑1 (MQ=60)
TTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAACCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTA < SRR4302540.9786007/94‑1 (MQ=60)
TTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACG < SRR4302540.7984642/94‑1 (MQ=60)
CTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCGAGTATCGCCGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACG > SRR4302540.2196366/1‑94 (MQ=60)
CTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACG > SRR4302540.2196368/1‑94 (MQ=60)
CTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACG < SRR4302540.950445/94‑1 (MQ=60)
CTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACG < SRR4302540.8655300/94‑1 (MQ=60)
CTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACG < SRR4302540.9457265/94‑1 (MQ=60)
TTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGG > SRR4302540.2879501/1‑94 (MQ=60)
TTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGG < SRR4302540.3530258/94‑1 (MQ=60)
TCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGC > SRR4302540.9306106/1‑94 (MQ=60)
CGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCA > SRR4302540.4840419/1‑94 (MQ=60)
GCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCAT < SRR4302540.5133414/94‑1 (MQ=60)
CCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATT > SRR4302540.3286772/1‑94 (MQ=60)
CCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATT > SRR4302540.7809665/1‑94 (MQ=60)
CCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATT > SRR4302540.4396515/1‑94 (MQ=60)
CCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATT > SRR4302540.1845255/1‑94 (MQ=60)
CCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATT > SRR4302540.339138/1‑94 (MQ=60)
CCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATT < SRR4302540.5189744/94‑1 (MQ=60)
CCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTC < SRR4302540.6071623/94‑1 (MQ=60)
CCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTC > SRR4302540.5137818/1‑94 (MQ=60)
CCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTC > SRR4302540.1600835/1‑94 (MQ=60)
CCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTGTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTC < SRR4302540.6071622/94‑1 (MQ=60)
GTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGT > SRR4302540.7323092/1‑94 (MQ=60)
TAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCA > SRR4302540.4606107/1‑94 (MQ=60)
TAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCA < SRR4302540.3594644/94‑1 (MQ=60)
TAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCA > SRR4302540.4473993/1‑94 (MQ=60)
TAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGACATTCGTCA > SRR4302540.6037929/1‑94 (MQ=60)
ATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAAT < SRR4302540.74581/94‑1 (MQ=60)
GGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAA > SRR4302540.3094140/1‑94 (MQ=60)
GGGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAA < SRR4302540.8636532/94‑1 (MQ=60)
GGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAA < SRR4302540.4148525/94‑1 (MQ=60)
GGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAA < SRR4302540.4078295/94‑1 (MQ=60)
GGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAA < SRR4302540.4148527/94‑1 (MQ=60)
GGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAA < SRR4302540.3806212/94‑1 (MQ=60)
GGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAA < SRR4302540.2856605/94‑1 (MQ=60)
GGTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAA < SRR4302540.9744117/94‑1 (MQ=60)
GTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAG < SRR4302540.945926/94‑1 (MQ=60)
GTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAG < SRR4302540.10021949/94‑1 (MQ=60)
GTGAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAG < SRR4302540.6984170/94‑1 (MQ=60)
GAACCGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGC < SRR4302540.6715596/94‑1 (MQ=60)
CGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCC < SRR4302540.9647488/94‑1 (MQ=60)
CGCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCC < SRR4302540.3988267/94‑1 (MQ=60)
GCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCA > SRR4302540.3903115/1‑94 (MQ=60)
GCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCA > SRR4302540.4826181/1‑94 (MQ=60)
GCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCA > SRR4302540.5694874/1‑94 (MQ=60)
GCTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCA > SRR4302540.7675502/1‑94 (MQ=60)
CTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAG > SRR4302540.1084162/1‑94 (MQ=60)
CTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAG > SRR4302540.8168798/1‑94 (MQ=60)
CTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAG < SRR4302540.6076212/94‑1 (MQ=60)
CTTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGACATTCGTCAATAAAGGCCGCCAG > SRR4302540.1084161/1‑94 (MQ=60)
TTTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGT < SRR4302540.4623435/94‑1 (MQ=60)
TTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTT < SRR4302540.6987964/94‑1 (MQ=60)
TTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTT > SRR4302540.7554859/1‑94 (MQ=60)
TTAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTT > SRR4302540.7554858/1‑94 (MQ=60)
TAAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTC < SRR4302540.1270950/94‑1 (MQ=60)
AAAGCCAGTATCGCCGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCA < SRR4302540.6463471/94‑1 (MQ=60)
AAAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCA < SRR4302540.7424687/94‑1 (MQ=60)
AAGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAG < SRR4302540.1626825/94‑1 (MQ=60)
AGCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGG < SRR4302540.5795631/94‑1 (MQ=60)
GCCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGA > SRR4302540.490994/1‑94 (MQ=60)
CCAGTATCGACGCCCTTTTTCTCGATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGAT > SRR4302540.7024985/1‑94 (MQ=60)
CCAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGAT < SRR4302540.5686108/94‑1 (MQ=60)
CAGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATT < SRR4302540.3235825/94‑1 (MQ=60)
AGTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACCTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTA > SRR4302540.4257042/1‑94 (MQ=60)
GTATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTAT < SRR4302540.1185025/94‑1 (MQ=60)
TATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATT > SRR4302540.8690587/1‑94 (MQ=60)
TATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATT < SRR4302540.2973702/94‑1 (MQ=60)
ATCGACGCCCTTTTTCTCCATCGTCGCCGTTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT < SRR4302540.1749028/94‑1 (MQ=60)
ATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT > SRR4302540.7455833/1‑94 (MQ=60)
ATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT < SRR4302540.7513587/94‑1 (MQ=60)
ATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT > SRR4302540.5820098/1‑94 (MQ=60)
ATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT < SRR4302540.289166/94‑1 (MQ=60)
ATCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT < SRR4302540.6293516/94‑1 (MQ=60)
ATCGACGCCCTTTTTCTCCAGAGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT < SRR4302540.7513588/94‑1 (MQ=60)
ATCGACGCACTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTT > SRR4302540.8126996/1‑94 (MQ=60)
TCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTTTTACGGCATTCGCCAATAAAGGCCGCCAGTTCAGGATTATTTT < SRR4302540.6165515/94‑1 (MQ=60)
TCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTT < SRR4302540.6165517/94‑1 (MQ=60)
TCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTT < SRR4302540.7770571/94‑1 (MQ=60)
TCGACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTT < SRR4302540.7770570/94‑1 (MQ=60)
GACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCCACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCC > SRR4302540.9613762/1‑94 (MQ=60)
GACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCC > SRR4302540.7662334/1‑94 (MQ=60)
GACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCC < SRR4302540.2288173/94‑1 (MQ=60)
GACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCC < SRR4302540.4711855/94‑1 (MQ=60)
GACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCC > SRR4302540.9385326/1‑94 (MQ=60)
ACGCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCG < SRR4302540.6431138/94‑1 (MQ=60)
GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCC < SRR4302540.9386516/94‑1 (MQ=60)
GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCC > SRR4302540.1201369/1‑94 (MQ=60)
GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCC < SRR4302540.1486494/94‑1 (MQ=60)
GCCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCC > SRR4302540.9334075/1‑94 (MQ=60)
GCCCTTTTTATCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCC < SRR4302540.1581016/94‑1 (MQ=60)
CCCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCG < SRR4302540.8973347/94‑1 (MQ=60)
CCTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGC > SRR4302540.6121541/1‑94 (MQ=60)
CTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCT > SRR4302540.8823132/1‑94 (MQ=60)
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CGTGCCGTACTCCATCAATACGAAGTTTGCTGCCCAAACGGGAATTTCTTCGCCCGTTAATGGGTGAACCGCTTTAAAGCCAGTATCGACGCCTTTTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCT > NC_000913/673011‑673197
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
