Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	865,377	C→T	G71R (GGG→AGG)	moeA ←	MoeA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	865,377	0	C	T	99.6%	921.5 / ‑6.1	254	G71R (GGG→AGG)	moeA	MoeA
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (115/137); total (116/138)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 262 total aligned reads displayed.

CGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTC  >  NC_000913/865287‑865465

cGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTgg                                                                                        >  2:2381403/1‑93 (MQ=255)

cGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGGTGCCTgg                                                                                        >  1:784754/1‑93 (MQ=255)

 ggTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGa                                                                                       <  2:9734775/93‑1 (MQ=255)

  gTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAg                                                                                      <  2:6122543/93‑1 (MQ=255)

     ataataCGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCa                                                                                   <  2:7300603/93‑1 (MQ=255)

      taataCGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCaa                                                                                  >  2:4372661/1‑93 (MQ=255)

        ataCGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAata                                                                                <  2:3122048/93‑1 (MQ=255)

         taCGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAatat                                                                               <  1:6197220/93‑1 (MQ=255)

         taCGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAatat                                                                               <  2:10026731/93‑1 (MQ=255)

         taCGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAatat                                                                               <  1:8850829/93‑1 (MQ=255)

         taCGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAatat                                                                               <  2:5668338/93‑1 (MQ=255)

             aaTGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGTCAATATCGGc                                                                           >  2:5370097/1‑93 (MQ=255)

             aaTGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATAGGc                                                                           <  2:8459256/93‑1 (MQ=255)

              aTGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCt                                                                          >  1:9119983/1‑93 (MQ=255)

                gCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTaa                                                                        <  1:6314587/93‑1 (MQ=255)

                gCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTaa                                                                        >  1:3391907/1‑93 (MQ=255)

                 cAGGTGCCCGCAGGGCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTaaa                                                                       <  1:2754186/93‑1 (MQ=255)

                 cAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTaaa                                                                       <  2:156504/93‑1 (MQ=255)

                   ggTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTCAACg                                                                     >  2:8854814/1‑93 (MQ=255)

                   ggTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACg                                                                     >  2:3157585/1‑93 (MQ=255)

                   ggTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACg                                                                     >  2:8053519/1‑93 (MQ=255)

                   ggTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACg                                                                     >  1:1013399/1‑93 (MQ=255)

                      aCCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCAc                                                                  <  2:2743783/93‑1 (MQ=255)

                      aCCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCAc                                                                  <  2:1525791/93‑1 (MQ=255)

                      aCCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCAc                                                                  <  2:7065649/93‑1 (MQ=255)

                      aCCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCAc                                                                  <  1:6816617/93‑1 (MQ=255)

                       cccGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCAcc                                                                 >  1:9699815/1‑93 (MQ=255)

                       cccGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCAcc                                                                 >  1:8323624/1‑93 (MQ=255)

                        ccGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACcg                                                                <  2:3455732/93‑1 (MQ=255)

                          gCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACcgcg                                                              >  1:3186592/1‑93 (MQ=255)

                          gCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACcgcg                                                              >  2:2638599/1‑93 (MQ=255)

                          gCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACcgcg                                                              <  1:3089791/93‑1 (MQ=255)

                          gCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACcgcg                                                              >  2:3278074/1‑93 (MQ=255)

                           cAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGt                                                             >  2:6637860/1‑93 (MQ=255)

                           cAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGt                                                             >  2:6478714/1‑93 (MQ=255)

                           cAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGt                                                             <  2:4543112/93‑1 (MQ=255)

                            aGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTa                                                            <  1:2649583/93‑1 (MQ=255)

                            aGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTa                                                            >  1:1305325/1‑93 (MQ=255)

                             ggCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAg                                                           >  1:3142632/1‑93 (MQ=255)

                              gCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGc                                                          <  2:9582171/93‑1 (MQ=255)

                              gCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGc                                                          <  1:9311554/93‑1 (MQ=255)

                               ccATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGcc                                                         <  1:992074/93‑1 (MQ=255)

                                cATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCg                                                        <  1:7497841/93‑1 (MQ=255)

                                cATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCg                                                        <  1:10026656/93‑1 (MQ=255)

                                cATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCg                                                        >  1:5433706/1‑93 (MQ=255)

                                 aTTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGt                                                       >  2:4460280/1‑93 (MQ=255)

                                  ttCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTc                                                      >  1:1664825/1‑93 (MQ=255)

                                  ttCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTc                                                      <  2:5098526/93‑1 (MQ=255)

                                   tCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTcc                                                     <  1:4574604/93‑1 (MQ=255)

                                   tCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTcc                                                     >  2:5996906/1‑93 (MQ=255)

                                    cACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCa                                                    <  2:4828453/93‑1 (MQ=255)

                                     cccATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCAt                                                   <  1:4703016/92‑1 (MQ=255)

                                     aCCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCAt                                                   <  1:6707303/93‑1 (MQ=255)

                                       cATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTg                                                 <  2:4588611/93‑1 (MQ=255)

                                         tGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCg                                               >  1:4045538/1‑93 (MQ=255)

                                              tGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGCCCATTGCGGAGtt                                          >  1:8953131/1‑93 (MQ=255)

                                               ggCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTa                                         <  2:3392081/93‑1 (MQ=255)

                                               ggCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTa                                         <  1:3021490/93‑1 (MQ=255)

                                                 cTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATc                                       <  1:2169242/93‑1 (MQ=255)

                                                 cTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATc                                       <  2:7162390/93‑1 (MQ=255)

                                                 cTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATc                                       <  2:5320105/93‑1 (MQ=255)

                                                   gACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCaa                                     >  2:2159529/1‑93 (MQ=255)

                                                   gACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCaa                                     >  2:9632271/1‑93 (MQ=255)

                                                   gACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCaa                                     <  1:4134302/93‑1 (MQ=255)

                                                    aCCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCaaa                                    <  1:351581/93‑1 (MQ=255)

                                                      cGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAAcc                                  <  2:1724230/93‑1 (MQ=255)

                                                       ggCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAAccc                                 >  1:4898172/1‑93 (MQ=255)

                                                        gCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAAcccc                                <  1:1728294/93‑1 (MQ=255)

                                                          aaaGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCgg                              >  1:2352519/1‑93 (MQ=255)

                                                           aaGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGa                             >  1:1896895/1‑93 (MQ=255)

                                                           aaGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGa                             >  2:9889609/1‑93 (MQ=255)

                                                              gATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACa                          >  1:5963504/1‑93 (MQ=255)

                                                              gATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACa                          <  2:695138/93‑1 (MQ=255)

                                                               aTTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACAt                         <  1:7263438/93‑1 (MQ=255)

                                                               aTTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACAt                         <  2:123811/93‑1 (MQ=255)

                                                                tttACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATc                        >  2:6772788/1‑93 (MQ=255)

                                                                tttACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATc                        <  1:4321684/93‑1 (MQ=255)

                                                                 ttACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCa                       >  1:4370925/1‑93 (MQ=255)

                                                                 ttACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCa                       <  2:1839006/93‑1 (MQ=255)

                                                                 ttACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCa                       >  1:8213947/1‑93 (MQ=255)

                                                                   aCCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAg                     <  2:3014662/93‑1 (MQ=255)

                                                                     cGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAgcg                   <  2:6314962/93‑1 (MQ=255)

                                                                     cGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAgcg                   <  1:3647984/93‑1 (MQ=255)

                                                                       gCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAgcggc                 <  1:8157413/93‑1 (MQ=255)

                                                                         aaCGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGa               >  1:139509/1‑93 (MQ=255)

                                                                         aaCGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGa               >  2:6620790/1‑93 (MQ=255)

                                                                          aCGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGaa              >  2:7832596/1‑93 (MQ=255)

                                                                          aCGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGaa              >  1:4757832/1‑93 (MQ=255)

                                                                           cGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGaaa             <  1:1740144/93‑1 (MQ=255)

                                                                              gCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGa          <  1:4890709/93‑1 (MQ=255)

                                                                              gCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGa          >  2:3774222/1‑93 (MQ=255)

                                                                                aGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACa        >  2:9186083/1‑93 (MQ=255)

                                                                                 gCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAt       <  2:8229612/93‑1 (MQ=255)

                                                                                 gCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAt       <  1:3566669/93‑1 (MQ=255)

                                                                                  cGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAtc      <  2:2099656/93‑1 (MQ=255)

                                                                                   ggTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAtcg     <  2:7796093/93‑1 (MQ=255)

                                                                                    gTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAGCCCCGGAACCTCAAGCGGCGAAACGACAacgc    <  2:5226629/93‑1 (MQ=255)

                                                                                    gTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAtcgc    >  2:3947945/1‑93 (MQ=255)

                                                                                     ttGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAtcgct   <  1:1544599/93‑1 (MQ=255)

                                                                                     ttGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAtcgct   <  2:8604737/93‑1 (MQ=255)

CGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTC  >  NC_000913/865287‑865465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAG  >  NC_000913/865284‑865470

CACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCT                                                                                               >  SRR4302540.7065297/1‑94 (MQ=60)

CACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCT                                                                                               <  SRR4302540.4706116/94‑1 (MQ=60)

 ACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTG                                                                                              <  SRR4302540.2117973/94‑1 (MQ=60)

 ACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTG                                                                                              >  SRR4302540.9922965/1‑94 (MQ=60)

 ACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTG                                                                                              >  SRR4302540.4404218/1‑94 (MQ=60)

 ACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTG                                                                                              >  SRR4302540.4264420/1‑94 (MQ=60)

  CCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGG                                                                                             <  SRR4302540.6331808/94‑1 (MQ=60)

  CCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGGTGCCTGG                                                                                             >  SRR4302540.793099/1‑94 (MQ=60)

    GGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAG                                                                                           >  SRR4302540.4851981/1‑94 (MQ=60)

    GGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAG                                                                                           >  SRR4302540.7514139/1‑94 (MQ=60)

    GGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAG                                                                                           <  SRR4302540.4235404/94‑1 (MQ=60)

     GTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGG                                                                                          >  SRR4302540.8259147/1‑94 (MQ=60)

      TCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGC                                                                                         >  SRR4302540.5606539/1‑94 (MQ=60)

       CATAATACGAATGCAGGTACCCGCAGGCCATTCACAATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCGGCGGTGGCCTGGAGGCA                                                                                        >  SRR4302540.8412168/1‑94 (MQ=60)

         TAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAAT                                                                                      >  SRR4302540.275140/1‑94 (MQ=60)

         TAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAAT                                                                                      >  SRR4302540.4750601/1‑94 (MQ=60)

          AATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATA                                                                                     <  SRR4302540.4524331/94‑1 (MQ=60)

           ATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATAT                                                                                    <  SRR4302540.3538600/94‑1 (MQ=60)

           ATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATAT                                                                                    <  SRR4302540.6914408/94‑1 (MQ=60)

            TACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATC                                                                                   <  SRR4302540.6266211/94‑1 (MQ=60)

            TACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATC                                                                                   <  SRR4302540.8953221/94‑1 (MQ=60)

             ACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCG                                                                                  >  SRR4302540.10149540/1‑94 (MQ=60)

              CGAATGCAGGTACCCGCAGGCCATTCACCATGGAATGGCTGACCGGCAAAGGATTTACCGGCAAAGGGCAGCGGTTGGCTGGAGGAAATATCGG                                                                                 >  SRR4302540.4062225/1‑94 (MQ=60)

                AATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCT                                                                               >  SRR4302540.9229601/1‑94 (MQ=60)

                AATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCT                                                                               <  SRR4302540.2775600/94‑1 (MQ=60)

                  TGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAA                                                                             >  SRR4302540.3428912/1‑94 (MQ=60)

                   GCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAA                                                                            <  SRR4302540.6384908/94‑1 (MQ=60)

                    CAGGTGCCCGCAGGGCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAAC                                                                           <  SRR4302540.2783952/94‑1 (MQ=60)

                    CAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAAC                                                                           <  SRR4302540.8069276/94‑1 (MQ=60)

                     AGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACG                                                                          >  SRR4302540.1023674/1‑94 (MQ=60)

                     AGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACG                                                                          >  SRR4302540.1476883/1‑94 (MQ=60)

                         ACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACC                                                                      >  SRR4302540.5776518/1‑94 (MQ=60)

                         ACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACC                                                                      <  SRR4302540.1662855/94‑1 (MQ=60)

                         ACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACC                                                                      >  SRR4302540.8420233/1‑94 (MQ=60)

                         ACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACC                                                                      <  SRR4302540.6892067/94‑1 (MQ=60)

                         ACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACC                                                                      >  SRR4302540.9813855/1‑94 (MQ=60)

                           CCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGC                                                                    >  SRR4302540.3136762/1‑94 (MQ=60)

                            CGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCG                                                                   >  SRR4302540.3221214/1‑94 (MQ=60)

                             GCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGT                                                                  <  SRR4302540.3123688/94‑1 (MQ=60)

                              CAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTA                                                                 >  SRR4302540.1318866/1‑94 (MQ=60)

                               AGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAG                                                                <  SRR4302540.2678325/94‑1 (MQ=60)

                               AGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAG                                                                >  SRR4302540.1320853/1‑94 (MQ=60)

                               AGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAG                                                                >  SRR4302540.3176892/1‑94 (MQ=60)

                               AGGCCATCCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAG                                                                <  SRR4302540.8989062/94‑1 (MQ=60)

                                 GCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCC                                                              <  SRR4302540.9422707/94‑1 (MQ=60)

                                 GCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCC                                                              <  SRR4302540.6781798/94‑1 (MQ=60)

                                 GCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCC                                                              <  SRR4302540.2822812/94‑1 (MQ=60)

                                  CCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCG                                                             >  SRR4302540.5493466/1‑94 (MQ=60)

                                  CCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCG                                                             <  SRR4302540.1002194/94‑1 (MQ=60)

                                   CATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGT                                                            >  SRR4302540.9926943/1‑94 (MQ=60)

                                   CATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGT                                                            <  SRR4302540.7581611/94‑1 (MQ=60)

                                   CATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGT                                                            <  SRR4302540.7581613/94‑1 (MQ=60)

                                   CATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGT                                                            <  SRR4302540.10143320/94‑1 (MQ=60)

                                    ATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTC                                                           >  SRR4302540.1682950/1‑94 (MQ=60)

                                      TCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCA                                                         <  SRR4302540.4623955/94‑1 (MQ=60)

                                        CCCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATT                                                       <  SRR4302540.4753277/94‑1 (MQ=60)

                                        ACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATT                                                       <  SRR4302540.6781323/94‑1 (MQ=60)

                                        ACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATT                                                       <  SRR4302540.8073882/94‑1 (MQ=60)

                                         CCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTG                                                      >  SRR4302540.7150009/1‑94 (MQ=60)

                                          CATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGC                                                     <  SRR4302540.2554126/94‑1 (MQ=60)

                                           ATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCG                                                    <  SRR4302540.4387186/94‑1 (MQ=60)

                                           ATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCG                                                    >  SRR4302540.4089156/1‑94 (MQ=60)

                                           ATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCG                                                    <  SRR4302540.3184446/94‑1 (MQ=60)

                                              GTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAG                                                 >  SRR4302540.10113980/1‑94 (MQ=60)

                                              GTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAG                                                 >  SRR4302540.6274934/1‑94 (MQ=60)

                                               TATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGT                                                >  SRR4302540.7703654/1‑94 (MQ=60)

                                               TATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGT                                                <  SRR4302540.2896346/94‑1 (MQ=60)

                                                ATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTT                                               >  SRR4302540.42705/1‑94 (MQ=60)

                                                ATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGCCCATTGCGGAGTT                                               >  SRR4302540.9058751/1‑94 (MQ=60)

                                                 TGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTA                                              <  SRR4302540.9819435/94‑1 (MQ=60)

                                                  GGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTAT                                             <  SRR4302540.3054698/94‑1 (MQ=60)

                                                    CTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCA                                           <  SRR4302540.2192636/94‑1 (MQ=60)

                                                      TACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAA                                         <  SRR4302540.8500698/94‑1 (MQ=60)

                                                      GACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAA                                         <  SRR4302540.2374372/94‑1 (MQ=60)

                                                      GACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAA                                         <  SRR4302540.4179026/94‑1 (MQ=60)

                                                       ACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAAC                                        <  SRR4302540.355186/94‑1 (MQ=60)

                                                         CGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCGAACCC                                      >  SRR4302540.4950858/1‑94 (MQ=60)

                                                         CGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCC                                      <  SRR4302540.127403/94‑1 (MQ=60)

                                                         CGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCC                                      <  SRR4302540.9560424/94‑1 (MQ=60)

                                                         CGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCC                                      <  SRR4302540.9200030/94‑1 (MQ=60)

                                                         CGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCC                                      >  SRR4302540.4950859/1‑94 (MQ=60)

                                                          GGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCC                                     >  SRR4302540.3310406/1‑94 (MQ=60)

                                                           GCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCG                                    <  SRR4302540.1746948/94‑1 (MQ=60)

                                                           GCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCG                                    <  SRR4302540.1746947/94‑1 (MQ=60)

                                                            CAAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGG                                   >  SRR4302540.2377854/1‑94 (MQ=60)

                                                             AAAGGATTTACCGGCAACTGGCAGCGGTTGCCTGTAGGGAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGA                                  >  SRR4302540.6595482/1‑94 (MQ=60)

                                                             AAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGA                                  >  SRR4302540.1917648/1‑94 (MQ=60)

                                                             AAAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGA                                  >  SRR4302540.6595484/1‑94 (MQ=60)

                                                              AAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAA                                 >  SRR4302540.4134890/1‑94 (MQ=60)

                                                              AAGGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGGAGCCGTCCATGGCGGAGGTATCAAACCCCGGAA                                 >  SRR4302540.9093315/1‑94 (MQ=60)

                                                                GGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACA                               >  SRR4302540.6029484/1‑94 (MQ=60)

                                                                GGATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACA                               <  SRR4302540.3127558/94‑1 (MQ=60)

                                                                  ATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATC                             <  SRR4302540.7344490/94‑1 (MQ=60)

                                                                  ATTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATC                             <  SRR4302540.6337020/94‑1 (MQ=60)

                                                                   TTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCA                            >  SRR4302540.4418406/1‑94 (MQ=60)

                                                                   TTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCA                            >  SRR4302540.8309420/1‑94 (MQ=60)

                                                                   TTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCA                            >  SRR4302540.3258007/1‑94 (MQ=60)

                                                                   TTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCA                            <  SRR4302540.4368734/94‑1 (MQ=60)

                                                                   TTTACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCA                            <  SRR4302540.3566974/94‑1 (MQ=60)

                                                                   TTTACCGGCAACGGGCAGCGGTTGCCTGGAAGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCA                            >  SRR4302540.1967677/1‑94 (MQ=60)

                                                                     TACCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAG                          <  SRR4302540.2022100/94‑1 (MQ=60)

                                                                       CCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCG                        <  SRR4302540.3984658/94‑1 (MQ=60)

                                                                       CCGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCG                        <  SRR4302540.475916/94‑1 (MQ=60)

                                                                        CGGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGG                       <  SRR4302540.3687945/94‑1 (MQ=60)

                                                                        CGGCAACGCGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGG                       <  SRR4302540.3687943/94‑1 (MQ=60)

                                                                         GGCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGC                      >  SRR4302540.2276173/1‑94 (MQ=60)

                                                                          GCAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCG                     <  SRR4302540.8252121/94‑1 (MQ=60)

                                                                           CAACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGA                    >  SRR4302540.140965/1‑94 (MQ=60)

                                                                            AACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAA                   >  SRR4302540.4808604/1‑94 (MQ=60)

                                                                            AACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCCGCGAA                   >  SRR4302540.3453548/1‑94 (MQ=60)

                                                                             ACGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAA                  <  SRR4302540.1509152/94‑1 (MQ=60)

                                                                              CGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAAC                 <  SRR4302540.1758966/94‑1 (MQ=60)

                                                                              CGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAAC                 <  SRR4302540.1758683/94‑1 (MQ=60)

                                                                              CGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAAC                 <  SRR4302540.9419694/94‑1 (MQ=60)

                                                                              CGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAAC                 <  SRR4302540.5314825/94‑1 (MQ=60)

                                                                              CGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAAC                 <  SRR4302540.3071572/94‑1 (MQ=60)

                                                                              CGGGCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAAA                 >  SRR4302540.1820552/1‑94 (MQ=60)

                                                                                 GCAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGAC              <  SRR4302540.4943297/94‑1 (MQ=60)

                                                                                  CAGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACA             <  SRR4302540.1038157/94‑1 (MQ=60)

                                                                                   AGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAT            >  SRR4302540.4434651/1‑94 (MQ=60)

                                                                                   AGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAT            >  SRR4302540.4923810/1‑94 (MQ=60)

                                                                                   AGCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACAT            <  SRR4302540.5114883/94‑1 (MQ=60)

                                                                                    GCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATC           <  SRR4302540.3605631/94‑1 (MQ=60)

                                                                                    GCGGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATC           <  SRR4302540.6245864/94‑1 (MQ=60)

                                                                                    GCGGTTGCCTGGAGGCAAGATCGGGTGACCGCACCGCGTAGCCGTCCATTGCGGAGTTATCAATCCCCGGAACATCAAGCGGCGAAACGACATC           <  SRR4302540.3605632/94‑1 (MQ=60)

                                                                                      GGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGC         >  SRR4302540.1608291/1‑94 (MQ=60)

                                                                                      GGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGC         >  SRR4302540.1742603/1‑94 (MQ=60)

                                                                                      GGTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATAGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGC         >  SRR4302540.4653437/1‑94 (MQ=60)

                                                                                       GTTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCT        <  SRR4302540.9603839/94‑1 (MQ=60)

                                                                                        TTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTC       <  SRR4302540.8875660/94‑1 (MQ=60)

                                                                                        TTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTC       <  SRR4302540.1561652/94‑1 (MQ=60)

                                                                                        TTGCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTC       <  SRR4302540.837161/94‑1 (MQ=60)

                                                                                          GCCTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGC     >  SRR4302540.4679781/1‑94 (MQ=60)

                                                                                            CTGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCA   >  SRR4302540.3019012/1‑94 (MQ=60)

                                                                                             TGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAG  <  SRR4302540.4052776/94‑1 (MQ=60)

                                                                                             TGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAG  >  SRR4302540.4384542/1‑94 (MQ=60)

CACCGGTCATAATACGAATGCAGGTACCCGCAGGCCATTCACCATGGTATGGCTGACCGGCAAAGGATTTACCGGCAACGGGCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAG  >  NC_000913/865284‑865470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`