Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 905,051 T→C E321G (GAG→GGG)  b0868 ← putative nucleotide di‑P‑sugar epimerase or dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913905,0510TC100.0% 770.0 / NA 239E321G (GAG→GGG) b0868putative nucleotide di‑P‑sugar epimerase or dehydratase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (110/129);  total (110/129)

Only 100 of 250 total aligned reads displayed.

GATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTG  >  NC_000913/904961‑905140
                                                                                          |                                                                                         
gATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAAccct                                                                                         <  1:9246891/93‑1 (MQ=255)
gATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAAccct                                                                                         <  1:7765746/93‑1 (MQ=255)
 aTTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCtt                                                                                        >  1:6995755/1‑93 (MQ=255)
   tAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTcc                                                                                      >  2:5690859/1‑93 (MQ=255)
   tAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTcc                                                                                      >  2:508650/1‑93 (MQ=255)
      cgcgGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTgc                                                                                   <  2:3455563/93‑1 (MQ=255)
         ggCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCa                                                                                <  2:3346030/93‑1 (MQ=255)
         ggCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCa                                                                                <  1:2894661/93‑1 (MQ=255)
          gCAGTTTTCCGTGGTCGCGTAGCCAGTCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAc                                                                               <  1:5326437/93‑1 (MQ=255)
          gCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAc                                                                               >  1:7063633/1‑93 (MQ=255)
            aGTTTTCCGTGGTCTCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAcgc                                                                             <  2:9296951/93‑1 (MQ=255)
            aGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGTTAATAACCTAACCCTTCCTGCGCAcgc                                                                             <  2:6504230/93‑1 (MQ=255)
            aGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAcgc                                                                             >  2:1863433/1‑93 (MQ=255)
            aGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAcgc                                                                             <  2:3851127/93‑1 (MQ=255)
               tttCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATTCCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTa                                                                          <  2:3601063/93‑1 (MQ=255)
                ttCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTaa                                                                         <  2:1084324/93‑1 (MQ=255)
                 tCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAat                                                                        >  1:3105305/1‑93 (MQ=255)
                 tCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAat                                                                        <  1:6906746/93‑1 (MQ=255)
                 tCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAat                                                                        <  1:475541/93‑1 (MQ=255)
                  ccGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAata                                                                       <  2:7714923/93‑1 (MQ=255)
                   cGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAatat                                                                      >  2:830218/1‑93 (MQ=255)
                   cGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAatat                                                                      >  1:4871955/1‑93 (MQ=255)
                     tGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATcc                                                                    >  2:1586344/1‑93 (MQ=255)
                     tGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATcc                                                                    <  1:979335/93‑1 (MQ=255)
                     tGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCCGCGCACGCGTAATATcc                                                                    <  1:5039232/93‑1 (MQ=255)
                      ggTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCa                                                                   <  1:512270/93‑1 (MQ=255)
                       gTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAg                                                                  <  2:2481067/93‑1 (MQ=255)
                        tCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGc                                                                 >  2:4374074/1‑93 (MQ=255)
                        tCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGc                                                                 >  2:7594174/1‑93 (MQ=255)
                         cgcgTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCg                                                                >  1:9394070/1‑93 (MQ=255)
                         cgcgTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCg                                                                >  2:9900090/1‑93 (MQ=255)
                            gTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTaa                                                             <  1:387978/93‑1 (MQ=255)
                            gTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTaa                                                             <  1:2510751/93‑1 (MQ=255)
                             tAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTaaa                                                            >  1:2984991/1‑93 (MQ=255)
                               gCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGt                                                          >  2:5187317/1‑93 (MQ=255)
                               gCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGt                                                          <  2:5788730/93‑1 (MQ=255)
                                caaGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATACCCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTc                                                         <  2:2185696/91‑1 (MQ=255)
                                  aGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCaa                                                       <  1:1383584/93‑1 (MQ=255)
                                   ggcggcAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATTACCTAACCCTTCCTGCGCAAGCGTACTACACAGCGCACACTCaac                                                      >  2:5125299/1‑92 (MQ=255)
                                   ggcggcAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCaaa                                                      >  2:8737054/1‑93 (MQ=255)
                                    gcggcAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCaaaa                                                     >  2:7888025/1‑93 (MQ=255)
                                     cggcAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAAt                                                    <  1:2243932/93‑1 (MQ=255)
                                       gcAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTc                                                  <  2:1637559/93‑1 (MQ=255)
                                         aGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCaa                                                <  1:1230666/93‑1 (MQ=255)
                                          gTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAAc                                               >  1:6283214/1‑93 (MQ=255)
                                           ttttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTACTATCCAGCGTAAAGTCAAAATTCAACt                                              >  2:6039567/1‑93 (MQ=255)
                                           ttttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACt                                              >  1:6427411/1‑93 (MQ=255)
                                           ttttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACt                                              <  1:6650215/93‑1 (MQ=255)
                                           ttttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACt                                              <  1:8243658/93‑1 (MQ=255)
                                           ttttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACt                                              >  2:1861066/1‑93 (MQ=255)
                                            tttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACtt                                             <  1:1028308/93‑1 (MQ=255)
                                            tttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACtt                                             >  2:8697620/1‑93 (MQ=255)
                                            tttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACtt                                             >  1:6670151/1‑93 (MQ=255)
                                             ttCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTg                                            >  1:903160/1‑93 (MQ=255)
                                               ctcGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGga                                          <  1:864655/93‑1 (MQ=255)
                                               ctcGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGga                                          <  2:5299646/93‑1 (MQ=255)
                                               ctcGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGga                                          <  1:8297534/93‑1 (MQ=255)
                                                 cGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGgaga                                        <  2:2375587/93‑1 (MQ=255)
                                                 cGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGgaga                                        <  2:8115028/93‑1 (MQ=255)
                                                 cGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGgaga                                        <  1:8432132/93‑1 (MQ=255)
                                                 cGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGgaga                                        <  2:4346512/93‑1 (MQ=255)
                                                   aTACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACg                                      >  2:2241366/1‑93 (MQ=255)
                                                     aCCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGcc                                    >  1:7566808/1‑93 (MQ=255)
                                                      ccTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCg                                   <  2:9590613/93‑1 (MQ=255)
                                                       cTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGt                                  <  1:3441509/93‑1 (MQ=255)
                                                        ttCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTa                                 <  2:9946064/93‑1 (MQ=255)
                                                        ttCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTa                                 >  2:9798345/1‑93 (MQ=255)
                                                         tCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAg                                <  1:2324690/93‑1 (MQ=255)
                                                         tCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAg                                <  1:8531373/93‑1 (MQ=255)
                                                           aTCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTACAGTCAAAATTCAACTTGGAGCCGCCGTAGTg                              >  1:7936884/1‑93 (MQ=255)
                                                           aTCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTg                              >  1:9516133/1‑93 (MQ=255)
                                                            tCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTgg                             >  1:203346/1‑93 (MQ=255)
                                                            tCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTgg                             <  2:6198921/93‑1 (MQ=255)
                                                              cAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTgggc                           >  2:2901024/1‑92 (MQ=255)
                                                                gggTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTcc                         >  2:6864918/1‑92 (MQ=255)
                                                                gggTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCa                         <  1:6559779/93‑1 (MQ=255)
                                                                gggTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCa                         >  2:8882322/1‑93 (MQ=255)
                                                                 ggTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAg                        >  2:8921032/1‑93 (MQ=255)
                                                                 ggTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAg                        >  1:7302550/1‑93 (MQ=255)
                                                                   tgatgaCCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAgcg                      <  2:6545977/93‑1 (MQ=255)
                                                                     atgaCCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAgcggc                    <  1:5436554/93‑1 (MQ=255)
                                                                     atgaCCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAgcggc                    <  2:9870639/93‑1 (MQ=255)
                                                                      tgaCCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAgcggcg                   <  2:7232609/93‑1 (MQ=255)
                                                                       gaCCGGCTGATAACCTATCCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGcggcgg                  <  1:5831282/93‑1 (MQ=255)
                                                                        aCCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCggcggc                 >  2:4959391/1‑93 (MQ=255)
                                                                          cGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGctc               <  1:2801709/93‑1 (MQ=255)
                                                                           ggCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGctct              <  1:5550026/93‑1 (MQ=255)
                                                                           ggCTGATAACCTAACCATTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGctct              >  2:6709975/1‑93 (MQ=255)
                                                                            gCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCtt             <  2:3058104/93‑1 (MQ=255)
                                                                            gCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCtt             <  1:7354713/93‑1 (MQ=255)
                                                                              tGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCtttt           <  2:3986779/93‑1 (MQ=255)
                                                                              tGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCtttt           >  1:1586022/1‑93 (MQ=255)
                                                                              tGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAAGTCAACTTGGAGACGCCGTAGTGGGTTAGCGGCGGCTCtttt           >  1:8945240/1‑93 (MQ=255)
                                                                               gATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTg          <  2:2076745/93‑1 (MQ=255)
                                                                               gATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTg          >  1:603666/1‑93 (MQ=255)
                                                                                  aaCCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCCCTTTTGCtc       >  1:1964540/1‑92 (MQ=255)
                                                                                   aCCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGa      <  1:4218726/93‑1 (MQ=255)
                                                                                    ccTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGAc     >  2:4861205/1‑93 (MQ=255)
                                                                                      tAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACtt   >  1:712820/1‑93 (MQ=255)
                                                                                      tAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACtt   <  1:9646981/93‑1 (MQ=255)
                                                                                          |                                                                                         
GATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTG  >  NC_000913/904961‑905140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTGCGGC  >  NC_000913/904959‑905144
                                                                                            |                                                                                             
AGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCC                                                                                              <  SRR4302540.2809153/94‑1 (MQ=60)
AGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCC                                                                                              >  SRR4302540.7535551/1‑94 (MQ=60)
AGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTAATAAGCTAACCC                                                                                              >  SRR4302540.7001773/1‑94 (MQ=60)
 GGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCT                                                                                             <  SRR4302540.2963743/94‑1 (MQ=60)
  GATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTT                                                                                            <  SRR4302540.6566603/94‑1 (MQ=60)
  GATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTT                                                                                            <  SRR4302540.9357607/94‑1 (MQ=60)
  GATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTT                                                                                            <  SRR4302540.7856531/94‑1 (MQ=60)
  GATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTT                                                                                            >  SRR4302540.7073397/1‑94 (MQ=60)
    TTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCTAGGGTGATGACCGGCTGATAACCTAACCCTTCC                                                                                          >  SRR4302540.9806110/1‑94 (MQ=60)
     TAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCT                                                                                         <  SRR4302540.6680731/94‑1 (MQ=60)
     TAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCT                                                                                         <  SRR4302540.4979020/94‑1 (MQ=60)
      AGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTG                                                                                        <  SRR4302540.4346361/94‑1 (MQ=60)
      AGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTC                                                                                        >  SRR4302540.2364513/1‑94 (MQ=60)
          CGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCC                                                                                    >  SRR4302540.9769890/1‑94 (MQ=60)
           GGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAC                                                                                   <  SRR4302540.2926227/94‑1 (MQ=60)
           GGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAC                                                                                   <  SRR4302540.5103448/94‑1 (MQ=60)
           GGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCAC                                                                                   >  SRR4302540.7142194/1‑94 (MQ=60)
            GCAGTTTTCCGTGGTCGCGTAGCCAGTCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACG                                                                                  <  SRR4302540.5384783/94‑1 (MQ=60)
            GCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACG                                                                                  <  SRR4302540.6765380/94‑1 (MQ=60)
              AGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCCCGCG                                                                                >  SRR4302540.6955693/1‑94 (MQ=60)
              AGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCG                                                                                <  SRR4302540.5770384/94‑1 (MQ=60)
               GTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGT                                                                               >  SRR4302540.5064940/1‑94 (MQ=60)
                  TTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAAT                                                                            >  SRR4302540.3139301/1‑94 (MQ=60)
                   TCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATA                                                                           <  SRR4302540.480634/94‑1 (MQ=60)
                   TCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATA                                                                           <  SRR4302540.6983552/94‑1 (MQ=60)
                    CCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATAT                                                                          >  SRR4302540.4924228/1‑94 (MQ=60)
                       TGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCA                                                                       <  SRR4302540.989369/94‑1 (MQ=60)
                       TGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCCGCGCACGCGTAATATCCA                                                                       <  SRR4302540.5093741/94‑1 (MQ=60)
                        GGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAG                                                                      >  SRR4302540.3707672/1‑94 (MQ=60)
                        GGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAG                                                                      <  SRR4302540.517772/94‑1 (MQ=60)
                        GGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCGGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAG                                                                      <  SRR4302540.9201473/94‑1 (MQ=60)
                         GTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGC                                                                     <  SRR4302540.6691085/94‑1 (MQ=60)
                         GTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGC                                                                     <  SRR4302540.4054021/94‑1 (MQ=60)
                          gcgcgtaacaaggtGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCG                                                                    <  SRR4302540.8808369/80‑1 (MQ=60)
                          TCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCG                                                                    >  SRR4302540.9505854/1‑94 (MQ=60)
                            GCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTA                                                                  <  SRR4302540.7710232/94‑1 (MQ=60)
                              GTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAA                                                                <  SRR4302540.391995/94‑1 (MQ=60)
                              GTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAA                                                                >  SRR4302540.743082/1‑94 (MQ=60)
                              GTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAA                                                                >  SRR4302540.3017926/1‑94 (MQ=60)
                              GTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAA                                                                <  SRR4302540.2537868/94‑1 (MQ=60)
                                AGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGT                                                              >  SRR4302540.1531111/1‑94 (MQ=60)
                                AGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAAACCTTGCTCCGCACGCGTAATATCCAGCGTAAAGC                                                              >  SRR4302540.4825633/1‑94 (MQ=60)
                                    AGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAA                                                          <  SRR4302540.1398363/94‑1 (MQ=60)
                                      GCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAAT                                                        <  SRR4302540.707279/94‑1 (MQ=60)
                                       CGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATT                                                       <  SRR4302540.2268049/94‑1 (MQ=60)
                                       CGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATT                                                       >  SRR4302540.2099593/1‑94 (MQ=60)
                                        GGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTC                                                      >  SRR4302540.7062020/1‑94 (MQ=60)
                                         GCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCA                                                     <  SRR4302540.7896748/94‑1 (MQ=60)
                                          CAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAA                                                    >  SRR4302540.4686453/1‑94 (MQ=60)
                                           AGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAAC                                                   <  SRR4302540.1243240/94‑1 (MQ=60)
                                           AGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAAC                                                   >  SRR4302540.6353140/1‑94 (MQ=60)
                                            GTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACT                                                  >  SRR4302540.6498949/1‑94 (MQ=60)
                                             TTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTT                                                 <  SRR4302540.6723780/94‑1 (MQ=60)
                                             TTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTT                                                 >  SRR4302540.6743858/1‑94 (MQ=60)
                                             TTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTT                                                 >  SRR4302540.3095186/1‑94 (MQ=60)
                                             TTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTT                                                 >  SRR4302540.3095185/1‑94 (MQ=60)
                                             TTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTT                                                 <  SRR4302540.8339470/94‑1 (MQ=60)
                                             TTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTT                                                 <  SRR4302540.2441345/94‑1 (MQ=60)
                                              TTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTG                                                >  SRR4302540.912751/1‑94 (MQ=60)
                                              TTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTG                                                <  SRR4302540.1038738/94‑1 (MQ=60)
                                               TTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGG                                               <  SRR4302540.7442406/94‑1 (MQ=60)
                                                 CTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAG                                             <  SRR4302540.8393879/94‑1 (MQ=60)
                                                 CTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAG                                             <  SRR4302540.873838/94‑1 (MQ=60)
                                                 CTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAG                                             <  SRR4302540.1937484/94‑1 (MQ=60)
                                                 CACGATACCTTCAGCCAGGGTGATGACCGTCTGATAACCTAACCGTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAG                                             <  SRR4302540.9471222/94‑1 (MQ=60)
                                                  TCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGA                                            <  SRR4302540.838794/94‑1 (MQ=60)
                                                   CGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGAC                                           >  SRR4302540.9177899/1‑94 (MQ=60)
                                                   CGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGAC                                           <  SRR4302540.288629/94‑1 (MQ=60)
                                                   CGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGAC                                           <  SRR4302540.8530018/94‑1 (MQ=60)
                                                    GATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACG                                          >  SRR4302540.2045744/1‑94 (MQ=60)
                                                    GATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACG                                          >  SRR4302540.5384982/1‑94 (MQ=60)
                                                    GATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACG                                          <  SRR4302540.5934316/94‑1 (MQ=60)
                                                     ATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGC                                         <  SRR4302540.2896912/94‑1 (MQ=60)
                                                      TACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCC                                        >  SRR4302540.7651688/1‑94 (MQ=60)
                                                       ACC‑TCATCCAGGGTGATTACCCGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGT                                      <  SRR4302540.1485050/94‑1 (MQ=60)
                                                        CCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGT                                      <  SRR4302540.1362203/94‑1 (MQ=60)
                                                        CCTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGT                                      <  SRR4302540.2954086/94‑1 (MQ=60)
                                                         CTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTA                                     >  SRR4302540.5596251/1‑94 (MQ=60)
                                                         CTTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTA                                     <  SRR4302540.3478926/94‑1 (MQ=60)
                                                         CTTCATCCAGGGGGATGACCGGCTGATAACCTAACCCTTCTTGCCCACCCGTAATATCTTGCGTAAAGTCAAAtttcgagttggggacgccaga                                     >  SRR4302540.8726112/1‑73 (MQ=37)
                                                          TTCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAG                                    <  SRR4302540.8970459/94‑1 (MQ=60)
                                                           TCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGT                                   <  SRR4302540.6736696/94‑1 (MQ=60)
                                                           TCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGT                                   <  SRR4302540.2349727/94‑1 (MQ=60)
                                                           TCATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGT                                   <  SRR4302540.8630498/94‑1 (MQ=60)
                                                            CATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTACAGTCAAAATTCAACTTGGAGCCGCCGTAGTG                                  >  SRR4302540.8029386/1‑94 (MQ=60)
                                                            CATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTG                                  >  SRR4302540.9628837/1‑94 (MQ=60)
                                                             ATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGG                                 >  SRR4302540.205348/1‑94 (MQ=60)
                                                             ATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGG                                 <  SRR4302540.2260507/94‑1 (MQ=60)
                                                             ATCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGG                                 >  SRR4302540.9522102/1‑94 (MQ=60)
                                                              TCCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGG                                <  SRR4302540.3464734/94‑1 (MQ=60)
                                                               CCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGT                               >  SRR4302540.8359404/1‑94 (MQ=60)
                                                               CCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGT                               >  SRR4302540.8359131/1‑94 (MQ=60)
                                                               CCAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGT                               <  SRR4302540.1941601/94‑1 (MQ=60)
                                                                CAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTC                              <  SRR4302540.6416192/94‑1 (MQ=60)
                                                                CAGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTC                              >  SRR4302540.9574036/1‑94 (MQ=60)
                                                                 AGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCA                             >  SRR4302540.6084154/1‑94 (MQ=60)
                                                                 AGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCA                             <  SRR4302540.7575304/94‑1 (MQ=60)
                                                                 AGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCA                             <  SRR4302540.5518811/94‑1 (MQ=60)
                                                                 AGGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTACTGGGTCA                             >  SRR4302540.9115045/1‑94 (MQ=60)
                                                                  GGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAG                            >  SRR4302540.7384061/1‑94 (MQ=60)
                                                                  GGGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAG                            <  SRR4302540.6632505/94‑1 (MQ=60)
                                                                   GGTGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGC                           >  SRR4302540.9757068/1‑94 (MQ=60)
                                                                     TGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGG                         >  SRR4302540.5315796/1‑94 (MQ=60)
                                                                     TGATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGG                         >  SRR4302540.5194780/1‑94 (MQ=60)
                                                                       ATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCG                       >  SRR4302540.10076748/1‑94 (MQ=60)
                                                                       ATGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCG                       <  SRR4302540.5496353/94‑1 (MQ=60)
                                                                        TGACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGG                      >  SRR4302540.8564181/1‑94 (MQ=60)
                                                                         GACCGGCTGATAACCTATCCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGC                     <  SRR4302540.5895758/94‑1 (MQ=60)
                                                                         GACCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGC                     <  SRR4302540.6344845/94‑1 (MQ=60)
                                                                           CCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTC                   <  SRR4302540.1330990/94‑1 (MQ=60)
                                                                           CCGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCAAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTC                   >  SRR4302540.6354289/1‑94 (MQ=60)
                                                                            CGGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCT                  <  SRR4302540.2831968/94‑1 (MQ=60)
                                                                             GGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTT                 <  SRR4302540.5611164/94‑1 (MQ=60)
                                                                             GGCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTT                 >  SRR4302540.7346268/1‑94 (MQ=60)
                                                                              GCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTT                <  SRR4302540.7436741/94‑1 (MQ=60)
                                                                              GCTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTT                <  SRR4302540.7094551/94‑1 (MQ=60)
                                                                               CTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTT               >  SRR4302540.1603348/1‑94 (MQ=60)
                                                                               CTGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAAGTCAACTTGGAGACGCCGTAGTGGGTTAGCGGCGGCTCTTTT               >  SRR4302540.9050429/1‑94 (MQ=60)
                                                                               CTCATACCCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTT               <  SRR4302540.7974431/94‑1 (MQ=60)
                                                                                TGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTG              >  SRR4302540.8181813/1‑94 (MQ=60)
                                                                                TGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTG              >  SRR4302540.610128/1‑94 (MQ=60)
                                                                                TGATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTG              <  SRR4302540.3864193/94‑1 (MQ=60)
                                                                                  ATAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCT            >  SRR4302540.8576244/1‑94 (MQ=60)
                                                                                   TAACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCCCTTTTGCTC           >  SRR4302540.1985876/1‑94 (MQ=60)
                                                                                     ACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGAC         <  SRR4302540.4264651/94‑1 (MQ=60)
                                                                                     ACCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGAC         <  SRR4302540.71668/94‑1 (MQ=60)
                                                                                      CCTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACT        <  SRR4302540.2323412/94‑1 (MQ=60)
                                                                                       CTAACCCTTCCTGCGCACTCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTT       <  SRR4302540.1631478/94‑1 (MQ=60)
                                                                                       CTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTT       >  SRR4302540.720477/1‑94 (MQ=60)
                                                                                       CTAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTT       >  SRR4302540.1236879/1‑94 (MQ=60)
                                                                                        TAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTG      <  SRR4302540.9760590/94‑1 (MQ=60)
                                                                                        TAACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTG      <  SRR4302540.277209/94‑1 (MQ=60)
                                                                                         AACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTGC     <  SRR4302540.7318352/94‑1 (MQ=60)
                                                                                          ACCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTGCG    <  SRR4302540.2085907/94‑1 (MQ=60)
                                                                                           CCCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTGCGG   >  SRR4302540.737974/1‑94 (MQ=60)
                                                                                            CCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTGCGGC  >  SRR4302540.5123997/1‑94 (MQ=60)
                                                                                            |                                                                                             
AGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAAAGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGCTCTTTTGCTGACTTGCGGC  >  NC_000913/904959‑905144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑