Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
908,737 |
T→C |
Q512Q (CAA→CAG) |
poxB ← |
pyruvate oxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 908,737 | 0 | T | C | 99.1%
| 688.7
/ ‑5.6
| 215 | Q512Q (CAA→CAG) | poxB | pyruvate oxidase |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (92/121); total (94/121) |
| Fisher's exact test for biased strand distribution p-value = 1.90e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 230 total aligned reads displayed.
CTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGTTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGT > NC_000913/908647‑908827
|
cTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTg > 1:9291079/1‑93 (MQ=255)
tGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGAGCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGc > 2:9867585/1‑93 (MQ=255)
tGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGc < 2:4958311/93‑1 (MQ=255)
gTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCa > 1:8212359/1‑93 (MQ=255)
gTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCa < 2:9689761/93‑1 (MQ=255)
ttCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAg > 1:6241075/1‑93 (MQ=255)
gAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGc > 1:5838312/1‑93 (MQ=255)
gAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGc < 2:8296052/93‑1 (MQ=255)
gAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGc < 1:998213/93‑1 (MQ=255)
aGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCt > 1:3828343/1‑93 (MQ=255)
gTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCtt < 1:4040261/93‑1 (MQ=255)
gTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCtt < 1:3384969/93‑1 (MQ=255)
ttGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTtca < 2:7331185/93‑1 (MQ=255)
aTCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTtcatca > 2:3680155/1‑93 (MQ=255)
cTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAAc < 1:8758185/93‑1 (MQ=255)
cTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAAc < 1:4331984/93‑1 (MQ=255)
cGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAAGTTc > 2:761912/1‑93 (MQ=255)
ggTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCa > 2:1602926/1‑93 (MQ=255)
ggAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATTAACTTCAGAc < 2:6554412/93‑1 (MQ=255)
ggAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGAc > 1:6445033/1‑93 (MQ=255)
aaTGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGc > 2:5719737/1‑93 (MQ=255)
aTGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCt < 1:5434571/93‑1 (MQ=255)
tGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCtt < 1:3960645/93‑1 (MQ=255)
tGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCtt > 1:2909414/1‑93 (MQ=255)
tGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCtt > 1:9536517/1‑93 (MQ=255)
tGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCtt < 1:5746190/93‑1 (MQ=255)
ggCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCttt < 2:6048939/93‑1 (MQ=255)
ggCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCttt < 2:7771283/93‑1 (MQ=255)
ggCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCttt > 1:2475527/1‑93 (MQ=255)
cTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCttttt > 2:8742832/1‑93 (MQ=255)
cTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCttttt < 2:5576586/93‑1 (MQ=255)
tAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTc > 1:2078225/1‑93 (MQ=255)
aaCTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCt > 1:1829804/1‑93 (MQ=255)
aaCTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCt > 2:3532846/1‑93 (MQ=255)
aaCTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCt > 2:6606841/1‑93 (MQ=255)
aaCTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCt > 1:3089350/1‑93 (MQ=255)
aCTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTa < 2:3234249/93‑1 (MQ=255)
aCTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTa > 1:2359439/1‑93 (MQ=255)
ctctTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTac > 2:596134/1‑93 (MQ=255)
ctctTCTCTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACTCTTTTTCTac < 1:1298991/93‑1 (MQ=255)
tcttctTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTacc > 1:8381926/1‑92 (MQ=255)
tcttctTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTaca < 1:8319837/93‑1 (MQ=255)
tcttctTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTaca > 2:8859944/1‑93 (MQ=255)
tcttctTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTaca < 2:9534162/93‑1 (MQ=255)
cttcttTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTacac > 2:3980611/1‑93 (MQ=255)
cttcttTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTacac < 1:7331052/93‑1 (MQ=255)
tttGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGAt < 1:4126099/93‑1 (MQ=255)
tttGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGAt < 1:9036638/93‑1 (MQ=255)
ttGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATa > 2:1889491/1‑93 (MQ=255)
tGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAAATTCAGACGCTTTTTCTACACGGATAc < 1:531243/93‑1 (MQ=255)
gCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACTCTTTTTCTACACGGATAccc < 1:4753672/93‑1 (MQ=255)
ccaccaCATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTaa < 1:5919032/93‑1 (MQ=255)
ccaccaCATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTaa < 2:9421227/93‑1 (MQ=255)
ccaccaCATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTaa > 2:6202000/1‑93 (MQ=255)
caccacATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAAt < 1:9135974/93‑1 (MQ=255)
caccacATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAAt > 2:3063787/1‑93 (MQ=255)
caccacATCCACCAACACCGGACCGGCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTaag > 2:9602820/1‑92 (MQ=255)
cacacaTCCCCCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATg < 2:8238720/91‑1 (MQ=255)
accacATCCACCAACGCCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATg < 1:7082961/93‑1 (MQ=255)
aaccaccaACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCa < 2:8953458/91‑1 (MQ=255)
tCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCAc > 2:2473363/1‑93 (MQ=255)
tCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCAc > 1:1563147/1‑93 (MQ=255)
ccaccaACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCcgcgcg > 1:4923827/1‑93 (MQ=255)
ccaccaACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACg < 2:7888680/93‑1 (MQ=255)
caccaACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGc < 2:9655271/93‑1 (MQ=255)
caccaACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGc > 2:4306704/1‑93 (MQ=255)
cccaACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCt < 2:9329747/92‑1 (MQ=255)
caACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTc > 2:9887192/1‑93 (MQ=255)
caACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTc > 2:4746560/1‑93 (MQ=255)
caACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTc > 2:4746557/1‑93 (MQ=255)
aaCACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCg < 1:7375596/93‑1 (MQ=255)
ccGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCaa < 1:2506694/93‑1 (MQ=255)
ccGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCaa < 1:1695156/93‑1 (MQ=255)
ccGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCaa > 2:9232839/1‑93 (MQ=255)
ccGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCaa < 2:1735828/93‑1 (MQ=255)
ggACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCGACACGGATACCCGTAATGCCGCACGCTTCGGCAATg > 2:8460675/1‑93 (MQ=255)
gccGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCg < 1:3212903/92‑1 (MQ=255)
ccGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATGCCCGTAATGCCGCACGCTTCGGCAATGCgg > 2:5050135/1‑93 (MQ=255)
ccGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCgg < 1:2605079/93‑1 (MQ=255)
cGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCggg > 1:4691418/1‑93 (MQ=255)
tCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCa > 2:528816/1‑93 (MQ=255)
cGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCaa < 1:6123550/93‑1 (MQ=255)
gATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCaaa < 2:4525922/93‑1 (MQ=255)
gATGGACAAGGCGCGCTGCAGCGCTTCATCAACTCCAGACGCTTTTTCTACACGGATCCCCGTAATGCCGCCCGCTTCGGCAATGCGGGCaaa < 2:1436680/93‑1 (MQ=255)
tGGAGAAGGCGCGCTGCAGGGCTTCATCCACTTCAGACGCTTTTTCTACCCGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGt > 1:7008888/1‑93 (MQ=255)
ggAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGtt < 2:3849121/93‑1 (MQ=255)
ggAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCATAATGCCGCACGCTTCGGCAATGCGGGCAAAGtt > 1:4613357/1‑93 (MQ=255)
gagaAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGttt < 1:6949944/93‑1 (MQ=255)
agaAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTtg < 1:7698694/93‑1 (MQ=255)
agaAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTtg > 1:5365487/1‑93 (MQ=255)
gaAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTtgt < 1:6729384/93‑1 (MQ=255)
gaAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTtgt < 1:1054803/93‑1 (MQ=255)
aGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTgtgt > 2:5914926/1‑93 (MQ=255)
aGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTgtgt < 1:9393916/93‑1 (MQ=255)
aGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTgtgt < 1:3774744/93‑1 (MQ=255)
ggCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTc < 2:6467033/93‑1 (MQ=255)
cgcgCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCgt < 1:8008550/93‑1 (MQ=255)
cgcgCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCgt < 2:7159922/93‑1 (MQ=255)
gcgcTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCgtg < 1:9061254/93‑1 (MQ=255)
cgTTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCgtgt > 2:5112085/1‑93 (MQ=255)
|
CTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGTTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGT > NC_000913/908647‑908827
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCCTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGTTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAGT > NC_000913/908644‑908830
|
GGCCTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGATCGTCGATGGAGAAGGCGCGC < SRR4302540.8279173/94‑1 (MQ=60)
GGCCTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGACGCGC > SRR4302540.7949135/1‑94 (MQ=60)
GGCCTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGACGCGC > SRR4302540.7949136/1‑94 (MQ=60)
CCTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTG > SRR4302540.9402113/1‑94 (MQ=60)
CTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGC > SRR4302540.567716/1‑94 (MQ=60)
CTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGC > SRR4302540.4567535/1‑94 (MQ=60)
CTGTTCGAGTTTGATCTGCGGGGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGAACCGTCGATGGAGAAGGCGCGCTGC > SRR4302540.2454387/1‑94 (MQ=60)
TGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCA < SRR4302540.2642604/94‑1 (MQ=60)
TGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCA > SRR4302540.845410/1‑94 (MQ=60)
TGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCA < SRR4302540.6829233/94‑1 (MQ=60)
TGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCA < SRR4302540.7045090/94‑1 (MQ=60)
TGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCA > SRR4302540.8307812/1‑94 (MQ=60)
GTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAG > SRR4302540.6310527/1‑94 (MQ=60)
CGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGC > SRR4302540.1604910/1‑94 (MQ=60)
CGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGC > SRR4302540.5902870/1‑94 (MQ=60)
GAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCT < SRR4302540.1008362/94‑1 (MQ=60)
GAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCT > SRR4302540.3870008/1‑94 (MQ=60)
AGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTT < SRR4302540.1954350/94‑1 (MQ=60)
GTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTC < SRR4302540.5968084/94‑1 (MQ=60)
GTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTC < SRR4302540.3421908/94‑1 (MQ=60)
GTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTC < SRR4302540.4083817/94‑1 (MQ=60)
TTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCAT < SRR4302540.8394936/94‑1 (MQ=60)
GATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCA < SRR4302540.2626298/94‑1 (MQ=60)
CTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACT < SRR4302540.4379139/94‑1 (MQ=60)
CTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACT < SRR4302540.8859755/94‑1 (MQ=60)
CTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACT < SRR4302540.7888669/94‑1 (MQ=60)
GCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTC < SRR4302540.2383964/94‑1 (MQ=60)
GCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTC < SRR4302540.5868416/94‑1 (MQ=60)
GGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAG < SRR4302540.3012442/94‑1 (MQ=60)
GGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAG < SRR4302540.5407894/94‑1 (MQ=60)
GGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACAAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAG < SRR4302540.6744282/94‑1 (MQ=60)
TGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGAC > SRR4302540.6516780/1‑94 (MQ=60)
TGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGAC < SRR4302540.5049367/94‑1 (MQ=60)
ATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTT > SRR4302540.4007837/1‑94 (MQ=60)
ATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTT > SRR4302540.4007835/1‑94 (MQ=60)
ATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTT < SRR4302540.5494342/94‑1 (MQ=60)
ATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTT > SRR4302540.9649396/1‑94 (MQ=60)
ATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTT > SRR4302540.9649395/1‑94 (MQ=60)
ATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTT > SRR4302540.2941205/1‑94 (MQ=60)
TGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTT > SRR4302540.6138266/1‑94 (MQ=60)
TGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTT < SRR4302540.5809563/94‑1 (MQ=60)
TGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTT < SRR4302540.4003363/94‑1 (MQ=60)
TGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTT > SRR4302540.2502181/1‑94 (MQ=60)
TGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTT > SRR4302540.7766960/1‑94 (MQ=60)
GGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTT > SRR4302540.1759566/1‑94 (MQ=60)
GCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTT < SRR4302540.7185806/94‑1 (MQ=60)
CTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTC > SRR4302540.2100558/1‑94 (MQ=60)
TAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCACCTTCAGACGCTTTTTCT > SRR4302540.7096762/1‑94 (MQ=60)
TAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCT > SRR4302540.1849823/1‑94 (MQ=60)
TAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCT > SRR4302540.3123241/1‑94 (MQ=60)
AACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTA > SRR4302540.2384859/1‑94 (MQ=60)
ACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTAC < SRR4302540.4757250/94‑1 (MQ=60)
CTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACC > SRR4302540.8479183/1‑94 (MQ=60)
CTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACA < SRR4302540.1312461/94‑1 (MQ=60)
CTCTTCTCTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACTCTTTTTCTACA < SRR4302540.1312460/94‑1 (MQ=60)
TCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACAC < SRR4302540.3376321/94‑1 (MQ=60)
TCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACAC < SRR4302540.8416413/94‑1 (MQ=60)
GCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACAC < SRR4302540.3982841/94‑1 (MQ=60)
CTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACG < SRR4302540.7412893/94‑1 (MQ=60)
TCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGA < SRR4302540.1755709/94‑1 (MQ=60)
CTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGAT > SRR4302540.4702710/1‑94 (MQ=60)
CTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGAT > SRR4302540.3577405/1‑94 (MQ=60)
TTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATA < SRR4302540.6512425/94‑1 (MQ=60)
TTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATA < SRR4302540.9182672/94‑1 (MQ=60)
TTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATA < SRR4302540.9165092/94‑1 (MQ=60)
TTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATA < SRR4302540.9145092/94‑1 (MQ=60)
TTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATA < SRR4302540.4170673/94‑1 (MQ=60)
TGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAAATTCAGACGCTTTTTCTACACGGATACC < SRR4302540.536988/94‑1 (MQ=60)
GGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCC < SRR4302540.9826550/94‑1 (MQ=60)
GCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACTCTTTTTCTACACGGATACCCG < SRR4302540.4804396/94‑1 (MQ=60)
GCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCG > SRR4302540.118673/1‑94 (MQ=60)
CGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGT > SRR4302540.2512083/1‑94 (MQ=60)
ACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAA < SRR4302540.6128545/94‑1 (MQ=60)
CCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAAT < SRR4302540.5984419/94‑1 (MQ=60)
CCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAAT < SRR4302540.7329850/94‑1 (MQ=60)
CCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAAT < SRR4302540.2730683/94‑1 (MQ=60)
CCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAAT < SRR4302540.3132699/94‑1 (MQ=60)
CCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAAT < SRR4302540.9457899/94‑1 (MQ=60)
CACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATG < SRR4302540.2399893/94‑1 (MQ=60)
CACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATG < SRR4302540.9245758/94‑1 (MQ=60)
CACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATC > SRR4302540.7013360/1‑94 (MQ=60)
ACCACATCCACCAACGCCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGC < SRR4302540.7161793/94‑1 (MQ=60)
CACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCG > SRR4302540.4821607/1‑94 (MQ=60)
CACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCG < SRR4302540.5336405/94‑1 (MQ=60)
CACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCAGCAACTTCAGACGCTTTGTCTACACGGATACCCGTAATGCCG > SRR4302540.9094546/1‑94 (MQ=60)
CATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCA > SRR4302540.742337/1‑94 (MQ=60)
ATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCAC < SRR4302540.9207787/94‑1 (MQ=60)
ATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCAC > SRR4302540.1580306/1‑94 (MQ=60)
TCCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCGCG > SRR4302540.4976888/1‑94 (MQ=60)
CCACCAACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGC > SRR4302540.8515295/1‑94 (MQ=60)
AACACCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGG < SRR4302540.7457798/94‑1 (MQ=60)
CCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAAT < SRR4302540.2533761/94‑1 (MQ=60)
CCGGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAAT < SRR4302540.1713529/94‑1 (MQ=60)
GGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGC < SRR4302540.4557974/94‑1 (MQ=60)
GGACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGC > SRR4302540.4377556/1‑94 (MQ=60)
GCCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGG < SRR4302540.3247785/94‑1 (MQ=60)
ACCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGG < SRR4302540.8101945/94‑1 (MQ=60)
CCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGG < SRR4302540.2633187/94‑1 (MQ=60)
CCGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGG > SRR4302540.4741577/1‑94 (MQ=60)
CGTCTATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGC > SRR4302540.410748/1‑94 (MQ=60)
CGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGC < SRR4302540.6213920/94‑1 (MQ=60)
CGTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGC < SRR4302540.937924/94‑1 (MQ=60)
ccgtatttcaAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCA > SRR4302540.5601866/11‑94 (MQ=60)
GTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCA > SRR4302540.5473916/1‑94 (MQ=60)
GTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCA > SRR4302540.5688417/1‑94 (MQ=60)
GTCGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGACGCACGCTTCGGCAATGCGGGCA > SRR4302540.3786233/1‑94 (MQ=60)
CGATGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAA < SRR4302540.6191750/94‑1 (MQ=60)
ATGGAGAAGGCGGGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGT < SRR4302540.8583516/94‑1 (MQ=60)
ATGGAGAAGGCGCGCTGCAGGGCTTCATCCACTTCAGACGCTTTTTCTACCCGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGT > SRR4302540.7086683/1‑94 (MQ=60)
TGGAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCATAATGCCGCACGCTTCGGCAATGCGGGCAAAGTT > SRR4302540.4662859/1‑94 (MQ=60)
GGAGTAGGCGCGCTGCATGGCTTCATCAACTTCAGACGCTTTTTCTCCACGGATACCCGTAATTCCGCACTCTTCGGCAATGCGGGCAAAGTTT < SRR4302540.3251994/94‑1 (MQ=60)
GAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTG > SRR4302540.5424431/1‑94 (MQ=60)
GAGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTG < SRR4302540.7027278/94‑1 (MQ=60)
AGAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGT < SRR4302540.7786538/94‑1 (MQ=60)
GAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTG < SRR4302540.1065541/94‑1 (MQ=60)
GAAGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTG < SRR4302540.6803682/94‑1 (MQ=60)
AGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTC < SRR4302540.3815927/94‑1 (MQ=60)
AGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTC < SRR4302540.3815926/94‑1 (MQ=60)
AGGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTC < SRR4302540.9505699/94‑1 (MQ=60)
GGCGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCG > SRR4302540.7787728/1‑94 (MQ=60)
CGCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTG < SRR4302540.8101729/94‑1 (MQ=60)
GCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGT < SRR4302540.9170050/94‑1 (MQ=60)
GCGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGT < SRR4302540.9614393/94‑1 (MQ=60)
CGCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTA > SRR4302540.634040/1‑94 (MQ=60)
GCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAG < SRR4302540.764490/94‑1 (MQ=60)
GCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAG < SRR4302540.4198260/94‑1 (MQ=60)
GCTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAG > SRR4302540.3120461/1‑94 (MQ=60)
CTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAGT > SRR4302540.7830781/1‑94 (MQ=60)
CTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAGT > SRR4302540.2094988/1‑94 (MQ=60)
CTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAGT > SRR4302540.7830782/1‑94 (MQ=60)
|
GGCCTGTTCGAGTTTGATCTGCGGTGGAATGGCTAACTCTTCTTTGGCGACCACCACATCCACCAACACCGGACCGTCGATGGAGAAGGCGCGTTGCAGGGCTTCATCAACTTCAGACGCTTTTTCTACACGGATACCCGTAATGCCGCACGCTTCGGCAATGCGGGCAAAGTTTGTGTCGTGTAGT > NC_000913/908644‑908830
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
