Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	922,398	T→C	V88A (GTG→GCG)	yljA →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	922,398	0	T	C	100.0%	1083.8 / NA	333	V88A (GTG→GCG)	yljA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (119/214); total (119/214)

Only 100 of 347 total aligned reads displayed.

CAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA  >  NC_000913/922308‑922487

 aaCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGaa                                                                                        >  2:6411898/1‑93 (MQ=255)

 aaCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGaa                                                                                        >  1:8593473/1‑93 (MQ=255)

 aaCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGaa                                                                                        <  2:8234359/93‑1 (MQ=255)

 aaCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGaa                                                                                        >  1:4240094/1‑93 (MQ=255)

 aaCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGaa                                                                                        >  1:355924/1‑93 (MQ=255)

  aCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAAc                                                                                       <  2:6298726/93‑1 (MQ=255)

  aCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAAc                                                                                       <  2:3749852/93‑1 (MQ=255)

  aCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAAc                                                                                       >  1:3285475/1‑93 (MQ=255)

  aCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGCCTTTACCGCCGAGGGTGCAGAAACCAAAGCGGCGATGGCGaaa                                                                                       >  1:2723132/1‑92 (MQ=255)

    gCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACaa                                                                                     >  1:6560646/1‑93 (MQ=255)

    gCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACaa                                                                                     <  2:6830393/93‑1 (MQ=255)

     cAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAg                                                                                    >  2:118960/1‑93 (MQ=255)

     cAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAg                                                                                    <  1:3839744/93‑1 (MQ=255)

      aaTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGt                                                                                   >  1:2425857/1‑93 (MQ=255)

       aTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTa                                                                                  <  2:4238732/93‑1 (MQ=255)

       aTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTa                                                                                  >  2:4146449/1‑93 (MQ=255)

       aTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTa                                                                                  <  2:7567826/93‑1 (MQ=255)

       aTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTa                                                                                  <  2:1842320/93‑1 (MQ=255)

       aTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTa                                                                                  <  2:9507872/93‑1 (MQ=255)

        ttGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAc                                                                                 <  2:2836839/93‑1 (MQ=255)

         tGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAcg                                                                                >  1:4694047/1‑93 (MQ=255)

          gATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAcgc                                                                               <  1:164814/93‑1 (MQ=255)

            tGCTCGCTGGTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGa                                                                             <  1:1526392/93‑1 (MQ=255)

             gCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAg                                                                            <  2:6650484/93‑1 (MQ=255)

               tCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAggg                                                                          <  2:389913/93‑1 (MQ=255)

                 gCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGgag                                                                        <  1:7529508/93‑1 (MQ=255)

                   tGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGaa                                                                      <  2:2371937/93‑1 (MQ=255)

                    gTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAt                                                                     <  2:1084410/93‑1 (MQ=255)

                      tCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGa                                                                   >  1:9008924/1‑93 (MQ=255)

                         cTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCa                                                                <  2:3362260/93‑1 (MQ=255)

                         cTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCa                                                                <  2:9454725/93‑1 (MQ=255)

                         cTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCa                                                                <  1:1027253/93‑1 (MQ=255)

                         cTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCa                                                                <  2:6756126/93‑1 (MQ=255)

                         cTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCa                                                                <  2:292319/93‑1 (MQ=255)

                          tACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCAt                                                               >  2:8750182/1‑93 (MQ=255)

                          tACCAGGGGAAGGCCACTTGCGGAGGGTTTACCCCCGAGGGTGCAGAAACTAAAGTGGCGATGGCGCACAAGTACGCGAGGGAGAATGAGCAt                                                               >  2:5064914/1‑93 (MQ=255)

                             cgggggAAGGCCGTTTGCGGAGTCTTTACCGCCGAGGGTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAGGAGCATCCa                                                            <  1:5755776/91‑1 (MQ=255)

                             cAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCa                                                            <  1:7022251/93‑1 (MQ=255)

                             cAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCa                                                            >  1:4399270/1‑93 (MQ=255)

                             cAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCa                                                            <  1:396487/93‑1 (MQ=255)

                             cAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCa                                                            >  2:4511543/1‑93 (MQ=255)

                                 ggAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGc                                                        <  1:5818804/93‑1 (MQ=255)

                                 ggAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCAATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGc                                                        >  2:4310980/1‑93 (MQ=255)

                                  gAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCt                                                       >  2:5864247/1‑93 (MQ=255)

                                   aaGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtg                                                      <  1:5042587/93‑1 (MQ=255)

                                   aaGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtg                                                      >  2:2582529/1‑93 (MQ=255)

                                    aGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgt                                                     <  1:2094990/93‑1 (MQ=255)

                                    aGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgt                                                     >  2:1384927/1‑93 (MQ=255)

                                     ggCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgtg                                                    >  1:7417530/1‑93 (MQ=255)

                                     ggCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgtg                                                    <  1:2857193/93‑1 (MQ=255)

                                     ggCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgtg                                                    >  2:7299670/1‑93 (MQ=255)

                                       ccATTTGCGGAGTCTTTACCGCCGAGGTTGCAGTAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTa                                                  <  1:9679483/93‑1 (MQ=255)

                                       ccATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTa                                                  <  2:3632966/93‑1 (MQ=255)

                                       ccATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTa                                                  <  1:3605219/93‑1 (MQ=255)

                                        cATTTGCGGAGTCTTTACCGCCGTGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTAc                                                 <  2:7220983/93‑1 (MQ=255)

                                        cATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTAc                                                 >  2:7399741/1‑93 (MQ=255)

                                          tttGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGc                                               >  2:21063/1‑93 (MQ=255)

                                           ttGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCt                                              <  1:8050545/93‑1 (MQ=255)

                                           ttGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCt                                              <  1:6489709/93‑1 (MQ=255)

                                            tGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGCGAATGAGCATCCATTGCTGTGTACGCtg                                             >  2:4926896/1‑92 (MQ=255)

                                             gCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAg                                            <  2:2014654/93‑1 (MQ=255)

                                             gCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAg                                            <  1:8290559/93‑1 (MQ=255)

                                                gAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaaa                                         <  2:6957790/93‑1 (MQ=255)

                                                gAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaaa                                         >  2:450624/1‑93 (MQ=255)

                                                 aGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaaaa                                        <  1:478978/93‑1 (MQ=255)

                                                 aGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaaaa                                        <  2:3646799/93‑1 (MQ=255)

                                                   tCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAg                                      >  2:5746696/1‑93 (MQ=255)

                                                   tCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAg                                      >  1:3400039/1‑93 (MQ=255)

                                                            ccgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGc                             >  2:532683/1‑93 (MQ=255)

                                                             cgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCa                            <  2:8894602/93‑1 (MQ=255)

                                                              gAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAg                           >  1:31234/1‑93 (MQ=255)

                                                               aGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAgg                          <  1:6186302/93‑1 (MQ=255)

                                                                ggTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGc                         >  2:4007848/1‑93 (MQ=255)

                                                                ggTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGc                         <  2:3060723/93‑1 (MQ=255)

                                                                 gTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCa                        <  1:2270753/93‑1 (MQ=255)

                                                                  ttGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCAt                       >  1:7177582/1‑93 (MQ=255)

                                                                  ttGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCAt                       >  1:4458370/1‑93 (MQ=255)

                                                                   tGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATa                      <  2:7720171/93‑1 (MQ=255)

                                                                    gCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATaa                     >  1:8879977/1‑93 (MQ=255)

                                                                     cAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATaaa                    <  2:1794158/93‑1 (MQ=255)

                                                                      aGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATaaaa                   <  1:6349013/93‑1 (MQ=255)

                                                                       gAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATaaaaa                  <  1:4561171/93‑1 (MQ=255)

                                                                         aaCCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAAtt                <  1:5538138/93‑1 (MQ=255)

                                                                           ccAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTgg              <  1:1182665/93‑1 (MQ=255)

                                                                            cAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTggg             >  1:6026353/1‑93 (MQ=255)

                                                                            cAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTggg             >  1:7198546/1‑93 (MQ=255)

                                                                             aaaGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTgggg            <  1:7060283/93‑1 (MQ=255)

                                                                             aaaGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTgggg            >  1:7383695/1‑93 (MQ=255)

                                                                              aaGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTggggg           <  2:3880446/93‑1 (MQ=255)

                                                                               aGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAG‑AAAAGCCTGAATGCAGGCATAAAAATTGGGGGAg         <  2:6047637/93‑1 (MQ=255)

                                                                                gTGGCGATGGCGAACAAGTACGCGAGGGAGAGTGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAg         <  1:7090607/93‑1 (MQ=255)

                                                                                gTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAg         <  2:1264053/93‑1 (MQ=255)

                                                                                 tggcgatggcgaACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAgg        <  1:9463482/93‑1 (MQ=255)

                                                                                 tggcgatggcgaACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAgg        <  1:1359265/93‑1 (MQ=255)

                                                                                 tggcgatggcgaACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAgg        <  1:9859784/93‑1 (MQ=255)

                                                                                    ggATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGc     <  1:3144141/92‑1 (MQ=255)

                                                                                    cGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGc     >  1:7773660/1‑93 (MQ=255)

                                                                                     gATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGcc    >  1:8691438/1‑93 (MQ=255)

                                                                                       tGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTa  >  2:4758711/1‑93 (MQ=255)

                                                                                       tGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTa  <  1:1847437/93‑1 (MQ=255)

CAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA  >  NC_000913/922308‑922487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTATGC  >  NC_000913/922306‑922490

TGCAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCG                                                                                             <  SRR4302540.875499/94‑1 (MQ=60)

TGCAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCG                                                                                             >  SRR4302540.1241392/1‑94 (MQ=60)

  CAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAA                                                                                           >  SRR4302540.359583/1‑94 (MQ=60)

  CAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAA                                                                                           >  SRR4302540.4286225/1‑94 (MQ=60)

  CAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAA                                                                                           >  SRR4302540.8693365/1‑94 (MQ=60)

   AACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAAC                                                                                          >  SRR4302540.9548013/1‑94 (MQ=60)

   AACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAAC                                                                                          >  SRR4302540.3321394/1‑94 (MQ=60)

    ACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACA                                                                                         <  SRR4302540.8764991/94‑1 (MQ=60)

     CGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAA                                                                                        <  SRR4302540.863135/94‑1 (MQ=60)

     CGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAA                                                                                        >  SRR4302540.6633379/1‑94 (MQ=60)

       CAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGT                                                                                      <  SRR4302540.3881503/94‑1 (MQ=60)

       CAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGT                                                                                      >  SRR4302540.2451990/1‑94 (MQ=60)

         ATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAC                                                                                    <  SRR4302540.6205194/94‑1 (MQ=60)

         ATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAC                                                                                    <  SRR4302540.7489838/94‑1 (MQ=60)

         AGTGATGCTGGGTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAC                                                                                    <  SRR4302540.7243184/94‑1 (MQ=60)

          TTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACG                                                                                   >  SRR4302540.4744227/1‑94 (MQ=60)

            GATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCG                                                                                 >  SRR4302540.4599708/1‑94 (MQ=60)

            GATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCG                                                                                 <  SRR4302540.166463/94‑1 (MQ=60)

             ATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGA                                                                                <  SRR4302540.1485106/94‑1 (MQ=60)

             ATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGA                                                                                >  SRR4302540.601544/1‑94 (MQ=60)

              TGGTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAG                                                                               <  SRR4302540.4239373/94‑1 (MQ=60)

              TGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAG                                                                               <  SRR4302540.4239375/94‑1 (MQ=60)

              TGCTCGCTGGTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAG                                                                               <  SRR4302540.1543300/94‑1 (MQ=60)

               cgTCGCTGTCCACTACCAGGGGAAGGCCATATGCGGAGTCTTGCCCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGG                                                                              <  SRR4302540.7576951/92‑1 (MQ=60)

               GCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGG                                                                              <  SRR4302540.7576952/94‑1 (MQ=60)

                CTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGG                                                                             <  SRR4302540.7302899/94‑1 (MQ=60)

                CTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGG                                                                             <  SRR4302540.7302898/94‑1 (MQ=60)

                CTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGG                                                                             <  SRR4302540.1196887/94‑1 (MQ=60)

                 tcccgGTTCACTACGAGGGGAAGGCCATTTGCGGAGTCTTTGCCGCCGAGGTTGCAGAATCCAAAGTGGCGATGGCGAACAAGTACGCGAGGGA                                                                            <  SRR4302540.5607118/89‑1 (MQ=60)

                 TCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGA                                                                            >  SRR4302540.4928018/1‑94 (MQ=60)

                 TCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGA                                                                            >  SRR4302540.2629856/1‑94 (MQ=60)

                  CGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAG                                                                           <  SRR4302540.4548189/94‑1 (MQ=60)

                   GCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGA                                                                          <  SRR4302540.7613793/94‑1 (MQ=60)

                   GCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGA                                                                          <  SRR4302540.4737295/94‑1 (MQ=60)

                   GCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGA                                                                          <  SRR4302540.4405866/94‑1 (MQ=60)

                     tgcgtgcttccctggggaggtcaatttgtgagtccttacctaCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAT                                                                        <  SRR4302540.7950572/52‑1 (MQ=60)

                     TGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAT                                                                        <  SRR4302540.184666/94‑1 (MQ=60)

                     TGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAT                                                                        >  SRR4302540.6547087/1‑94 (MQ=60)

                     TGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAT                                                                        <  SRR4302540.2931396/94‑1 (MQ=60)

                     TGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAT                                                                        <  SRR4302540.6569675/94‑1 (MQ=60)

                     TGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAT                                                                        <  SRR4302540.1922888/94‑1 (MQ=60)

                      ATTCACTACCAGGGGAAGGCCATTTGCGGCGTCTTTCCCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATG                                                                       <  SRR4302540.8375075/94‑1 (MQ=60)

                       TTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGA                                                                      >  SRR4302540.5534158/1‑94 (MQ=60)

                       TTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGA                                                                      >  SRR4302540.8086623/1‑94 (MQ=60)

                       TTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGA                                                                      >  SRR4302540.9117002/1‑94 (MQ=60)

                         CACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGC                                                                    <  SRR4302540.2310997/94‑1 (MQ=60)

                         CACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGC                                                                    >  SRR4302540.3160761/1‑94 (MQ=60)

                         CACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGC                                                                    <  SRR4302540.5011804/94‑1 (MQ=60)

                           CTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCAT                                                                  >  SRR4302540.6064239/1‑94 (MQ=60)

                           CTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCAT                                                                  <  SRR4302540.1037673/94‑1 (MQ=60)

                           CTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCAT                                                                  >  SRR4302540.2976625/1‑94 (MQ=60)

                             ACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCC                                                                >  SRR4302540.3702495/1‑94 (MQ=60)

                              CCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCA                                                               >  SRR4302540.6974312/1‑94 (MQ=60)

                              CCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCA                                                               >  SRR4302540.4446984/1‑94 (MQ=60)

                               CGGGGGAAGGCCGTTTGCGGAGTCTTTACCGCCGAGGGTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAGGAGCATCCAT                                                              <  SRR4302540.5819309/94‑1 (MQ=60)

                               CAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCAT                                                              <  SRR4302540.5819310/94‑1 (MQ=60)

                               CAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCAT                                                              <  SRR4302540.7100254/94‑1 (MQ=60)

                               CAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCAT                                                              <  SRR4302540.7277808/94‑1 (MQ=60)

                               CAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCAT                                                              <  SRR4302540.400598/94‑1 (MQ=60)

                                AGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATT                                                             <  SRR4302540.890577/94‑1 (MQ=60)

                                AGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATT                                                             <  SRR4302540.7712001/94‑1 (MQ=60)

                                AGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATT                                                             <  SRR4302540.3258282/94‑1 (MQ=60)

                                 GGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTG                                                            <  SRR4302540.6111382/94‑1 (MQ=60)

                                 GGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTG                                                            <  SRR4302540.4776712/94‑1 (MQ=60)

                                 GGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTG                                                            >  SRR4302540.2858775/1‑94 (MQ=60)

                                   GGAAGTCTATTTGCGTGGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCT                                                          <  SRR4302540.7504638/94‑1 (MQ=60)

                                   GGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCT                                                          <  SRR4302540.5883128/94‑1 (MQ=60)

                                   GGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCT                                                          <  SRR4302540.1247778/94‑1 (MQ=60)

                                    GAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTG                                                         <  SRR4302540.4495119/94‑1 (MQ=60)

                                     AAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGT                                                        <  SRR4302540.3239523/94‑1 (MQ=60)

                                     AAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGT                                                        <  SRR4302540.5097133/94‑1 (MQ=60)

                                      AGTCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTG                                                       <  SRR4302540.3940342/94‑1 (MQ=60)

                                      AGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTG                                                       >  SRR4302540.7500149/1‑94 (MQ=60)

                                      AGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTG                                                       <  SRR4302540.2117488/94‑1 (MQ=60)

                                       GGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGT                                                      <  SRR4302540.2888144/94‑1 (MQ=60)

                                        GCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTA                                                     <  SRR4302540.9273056/94‑1 (MQ=60)

                                         CCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGTAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTAC                                                    <  SRR4302540.9793370/94‑1 (MQ=60)

                                         CCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTAC                                                    <  SRR4302540.7857077/94‑1 (MQ=60)

                                         CCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTAC                                                    <  SRR4302540.3644617/94‑1 (MQ=60)

                                         CCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTAC                                                    <  SRR4302540.7103644/94‑1 (MQ=60)

                                         CCATGTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTAC                                                    <  SRR4302540.7103645/94‑1 (MQ=60)

                                          CATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACG                                                   >  SRR4302540.7481756/1‑94 (MQ=60)

                                          CATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACG                                                   >  SRR4302540.2645950/1‑94 (MQ=60)

                                          CATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACG                                                   <  SRR4302540.3354193/94‑1 (MQ=60)

                                             TTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTA                                                <  SRR4302540.8144051/94‑1 (MQ=60)

                                             TTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTA                                                <  SRR4302540.6561877/94‑1 (MQ=60)

                                              TGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAG                                               <  SRR4302540.3676835/94‑1 (MQ=60)

                                               GCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGA                                              <  SRR4302540.8386836/94‑1 (MQ=60)

                                                CGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAA                                             <  SRR4302540.7300476/94‑1 (MQ=60)

                                                CGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAA                                             >  SRR4302540.3527618/1‑94 (MQ=60)

                                                CGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAA                                             <  SRR4302540.4375374/94‑1 (MQ=60)

                                                CGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAA                                             <  SRR4302540.3177315/94‑1 (MQ=60)

                                                 GGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAA                                            >  SRR4302540.3614580/1‑94 (MQ=60)

                                                  GAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAA                                           <  SRR4302540.6467069/94‑1 (MQ=60)

                                                  GAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAA                                           <  SRR4302540.6467068/94‑1 (MQ=60)

                                                   AGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAA                                          <  SRR4302540.484110/94‑1 (MQ=60)

                                                   AGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAA                                          <  SRR4302540.4823811/94‑1 (MQ=60)

                                                   AGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAA                                          <  SRR4302540.992068/94‑1 (MQ=60)

                                                   AGTCTTTACCGCCGAGGTGGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAA                                          <  SRR4302540.4823810/94‑1 (MQ=60)

                                                    GTCTTTACCGCCGAGGTTGTAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAG                                         <  SRR4302540.2262395/94‑1 (MQ=60)

                                                    GTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAG                                         >  SRR4302540.3437109/1‑94 (MQ=60)

                                                     TCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGC                                        <  SRR4302540.8159153/94‑1 (MQ=60)

                                                     TCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGC                                        <  SRR4302540.7256589/94‑1 (MQ=60)

                                                     TCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGC                                        >  SRR4302540.4704574/1‑94 (MQ=60)

                                                      CTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCC                                       <  SRR4302540.9059310/94‑1 (MQ=60)

                                                      CTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCC                                       <  SRR4302540.10022534/94‑1 (MQ=60)

                                                      CTTGACCGCCGAGGTTGCAGAAACCACAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCC                                       <  SRR4302540.9059311/94‑1 (MQ=60)

                                                        TTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTG                                     <  SRR4302540.1151716/94‑1 (MQ=60)

                                                        TTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTG                                     <  SRR4302540.1413773/94‑1 (MQ=60)

                                                        TTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTG                                     <  SRR4302540.1151717/94‑1 (MQ=60)

                                                        TTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTG                                     <  SRR4302540.1413772/94‑1 (MQ=60)

                                                         TACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGA                                    >  SRR4302540.3557659/1‑94 (MQ=60)

                                                          ACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAA                                   <  SRR4302540.8718263/94‑1 (MQ=60)

                                                           CCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAAT                                  <  SRR4302540.2821371/94‑1 (MQ=60)

                                                           CCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAAT                                  <  SRR4302540.1733261/94‑1 (MQ=60)

                                                           CCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAAT                                  <  SRR4302540.168716/94‑1 (MQ=60)

                                                           CCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAAT                                  <  SRR4302540.6376558/94‑1 (MQ=60)

                                                           CCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAAT                                  <  SRR4302540.3956114/94‑1 (MQ=60)

                                                              CCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGTATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCA                               <  SRR4302540.8516259/94‑1 (MQ=60)

                                                               CGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAG                              >  SRR4302540.31561/1‑94 (MQ=60)

                                                               CGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAG                              >  SRR4302540.8822869/1‑94 (MQ=60)

                                                                GAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGG                             <  SRR4302540.5169390/94‑1 (MQ=60)

                                                                 AGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGC                            >  SRR4302540.2479012/1‑94 (MQ=60)

                                                                 AGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGC                            <  SRR4302540.6255193/94‑1 (MQ=60)

                                                                 AGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGGACGCGAGGGAGAATGAGCATCAATTGCTGTGAACGCTAGAAAAAGCCTGAATGCAGGC                            >  SRR4302540.6558721/1‑94 (MQ=60)

                                                                  GGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCA                           >  SRR4302540.3333858/1‑94 (MQ=60)

                                                                  GGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCA                           <  SRR4302540.449825/94‑1 (MQ=60)

                                                                  GGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCA                           <  SRR4302540.9845861/94‑1 (MQ=60)

                                                                   GTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCAT                          <  SRR4302540.2282740/94‑1 (MQ=60)

                                                                   GTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCAT                          >  SRR4302540.4506700/1‑94 (MQ=60)

                                                                   GTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCAT                          <  SRR4302540.2295119/94‑1 (MQ=60)

                                                                   GTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCAT                          >  SRR4302540.7257593/1‑94 (MQ=60)

                                                                     TGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAA                        >  SRR4302540.8982743/1‑94 (MQ=60)

                                                                     TGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAA                        >  SRR4302540.9616518/1‑94 (MQ=60)

                                                                      GCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAA                       >  SRR4302540.4419620/1‑94 (MQ=60)

                                                                       CAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAA                      >  SRR4302540.2988395/1‑94 (MQ=60)

                                                                       CAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAA                      >  SRR4302540.3599383/1‑94 (MQ=60)

                                                                        AGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAA                     >  SRR4302540.6601888/1‑94 (MQ=60)

                                                                        AGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAA                     <  SRR4302540.6419717/94‑1 (MQ=60)

                                                                         GAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAAT                    <  SRR4302540.4610452/94‑1 (MQ=60)

                                                                         GAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAAT                    <  SRR4302540.4610453/94‑1 (MQ=60)

                                                                         GAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAAT                    >  SRR4302540.2296227/1‑94 (MQ=60)

                                                                          AAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATT                   >  SRR4302540.6374317/1‑94 (MQ=60)

                                                                           AACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTG                  <  SRR4302540.1608056/94‑1 (MQ=60)

                                                                           AACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTG                  <  SRR4302540.5599134/94‑1 (MQ=60)

                                                                           AACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAACTG                  <  SRR4302540.9725616/94‑1 (MQ=60)

                                                                             CCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGG                >  SRR4302540.1661031/1‑94 (MQ=60)

                                                                             CCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGG                <  SRR4302540.1194874/94‑1 (MQ=60)

                                                                             CCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGG                <  SRR4302540.3887806/94‑1 (MQ=60)

                                                                             CCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGG                >  SRR4302540.7278795/1‑94 (MQ=60)

                                                                             CCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGG                >  SRR4302540.6093222/1‑94 (MQ=60)

                                                                              CAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGG               <  SRR4302540.5315710/94‑1 (MQ=60)

                                                                              CAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGG               >  SRR4302540.7465967/1‑94 (MQ=60)

                                                                              CAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGG               <  SRR4302540.5874935/94‑1 (MQ=60)

                                                                              CAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGG               <  SRR4302540.5874936/94‑1 (MQ=60)

                                                                               AAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGG              <  SRR4302540.8979758/94‑1 (MQ=60)

                                                                               AAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGG              <  SRR4302540.7138803/94‑1 (MQ=60)

                                                                               AAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGG              <  SRR4302540.7138802/94‑1 (MQ=60)

                                                                               AAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGG              >  SRR4302540.7205096/1‑94 (MQ=60)

                                                                               AAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGG              <  SRR4302540.7263923/94‑1 (MQ=60)

                                                                                AAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGA             <  SRR4302540.5750167/94‑1 (MQ=60)

                                                                                 AGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAG            >  SRR4302540.8126827/1‑94 (MQ=60)

                                                                                 AGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAG            <  SRR4302540.620352/94‑1 (MQ=60)

                                                                                 AGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAG            <  SRR4302540.7039590/94‑1 (MQ=60)

                                                                                  GTGGCGATGGCGAACAAGTACGCGAGGGAGAGTGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGG           <  SRR4302540.7169513/94‑1 (MQ=60)

                                                                                  GTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGG           <  SRR4302540.94296/94‑1 (MQ=60)

                                                                                  GTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGG           >  SRR4302540.7134808/1‑94 (MQ=60)

                                                                                  GTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGG           <  SRR4302540.3575639/94‑1 (MQ=60)

                                                                                   TGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGT          <  SRR4302540.9575760/94‑1 (MQ=60)

                                                                                   TGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGT          <  SRR4302540.9974990/94‑1 (MQ=60)

                                                                                   TGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGT          <  SRR4302540.1373604/94‑1 (MQ=60)

                                                                                     GCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGC        <  SRR4302540.208963/94‑1 (MQ=60)

                                                                                     GCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGC        >  SRR4302540.7864536/1‑94 (MQ=60)

                                                                                      GGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCC       <  SRR4302540.3178407/94‑1 (MQ=60)

                                                                                      CGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCC       >  SRR4302540.8792344/1‑94 (MQ=60)

                                                                                      CGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCC       >  SRR4302540.8604537/1‑94 (MQ=60)

                                                                                      CGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCC       >  SRR4302540.812542/1‑94 (MQ=60)

                                                                                      CGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATT‑GGGGAGGGGCCT      >  SRR4302540.7152017/1‑94 (MQ=60)

                                                                                        ATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA     >  SRR4302540.3225532/1‑94 (MQ=60)

                                                                                        ATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA     <  SRR4302540.2222301/94‑1 (MQ=60)

                                                                                         TGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTAT    <  SRR4302540.1867694/94‑1 (MQ=60)

                                                                                         TGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTAT    <  SRR4302540.5707922/94‑1 (MQ=60)

                                                                                           GCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTTCGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTATGC  <  SRR4302540.6975932/94‑1 (MQ=60)

                                                                                           GCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTATGC  <  SRR4302540.6975933/94‑1 (MQ=60)

TGCAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTATGC  >  NC_000913/922306‑922490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`