Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,040,218 |
G→A |
A127T (GCA→ACA) |
appA → |
phosphoanhydride phosphorylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,040,218 | 0 | G | A | 99.5%
| 686.7
/ ‑5.4
| 193 | A127T (GCA→ACA) | appA | phosphoanhydride phosphorylase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (97/94); total (98/95) |
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.61e-01 |
Only 100 of 198 total aligned reads displayed.
AAGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGGCACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCAA > NC_000913/1040128‑1040307
|
aGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGacac > 2:7058494/1‑93 (MQ=255)
tGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGAc > 1:6246570/1‑93 (MQ=255)
tGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGAc < 1:6689564/93‑1 (MQ=255)
gCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACt < 1:1934363/93‑1 (MQ=255)
gCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACt > 1:7370456/1‑93 (MQ=255)
cccGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACtg < 2:4836224/93‑1 (MQ=255)
ccGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACtgt < 1:5266834/93‑1 (MQ=255)
ccGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACtgt > 2:8673226/1‑93 (MQ=255)
ccGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACtgt < 2:3202983/93‑1 (MQ=255)
cGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACtgtg > 1:5902503/1‑93 (MQ=255)
gCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGc < 1:1285201/93‑1 (MQ=255)
cAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCa < 2:9481930/93‑1 (MQ=255)
cAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCa > 2:8827932/1‑93 (MQ=255)
cTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATaa < 2:6177059/93‑1 (MQ=255)
cTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATaa < 1:4689457/93‑1 (MQ=255)
gTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCg > 2:4445440/1‑93 (MQ=255)
gTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCg > 1:5739475/1‑93 (MQ=255)
cAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTa < 2:2742163/93‑1 (MQ=255)
aGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAAGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTAc > 2:3724413/1‑93 (MQ=255)
ggTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGACGCATTCACCGCCGGGCTGACACCTGACTTTACAATAACCGTACa > 2:6253100/1‑93 (MQ=255)
ggTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACa > 2:1969156/1‑93 (MQ=255)
ggTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACa < 2:8294480/93‑1 (MQ=255)
ggTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACa < 1:475691/93‑1 (MQ=255)
gTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACAt > 2:8769603/1‑93 (MQ=255)
tCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATa > 2:1251488/1‑93 (MQ=255)
gcgATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATAcc < 2:7910742/93‑1 (MQ=255)
gcgATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATAcc > 1:1130193/1‑93 (MQ=255)
gcgATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATAcc > 1:2071700/1‑93 (MQ=255)
gcgATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATAcc > 1:4163077/1‑93 (MQ=255)
cgATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATAccc > 1:6122469/1‑93 (MQ=255)
gATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCa > 1:6184867/1‑93 (MQ=255)
gATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCa > 2:8166250/1‑93 (MQ=255)
gATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCa < 2:8373751/93‑1 (MQ=255)
tttGCTGATTTCACCGAGCGTACCCGTAAAACAGCCCAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCa < 1:2412326/92‑1 (MQ=255)
attGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCa < 2:4977839/93‑1 (MQ=255)
attGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCa > 1:958744/1‑93 (MQ=255)
tGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGa < 2:6596289/93‑1 (MQ=255)
gCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGAt < 2:8403164/93‑1 (MQ=255)
cTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATa < 1:3376909/93‑1 (MQ=255)
tGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATAc > 2:2206733/1‑93 (MQ=255)
tGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATAc > 1:386830/1‑93 (MQ=255)
gATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACg > 1:5458103/1‑93 (MQ=255)
gATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACg > 2:1280457/1‑93 (MQ=255)
aTGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGt < 1:9236688/93‑1 (MQ=255)
tGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTc > 1:7703395/1‑93 (MQ=255)
gTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACTGTACATACCCAGGCAGATACGTcc > 1:4402231/1‑93 (MQ=255)
gTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTcc < 1:3714486/93‑1 (MQ=255)
gacgaGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGt < 2:3473656/93‑1 (MQ=255)
acgaGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTc < 1:696592/93‑1 (MQ=255)
cgaGCGTCCCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTcc < 2:5932216/93‑1 (MQ=255)
cgaGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTcc > 2:9418435/1‑93 (MQ=255)
gaGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTccc < 1:1063748/93‑1 (MQ=255)
gaGCGTACCCGAAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTccc < 2:4083306/93‑1 (MQ=255)
gCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGa > 2:9232160/1‑93 (MQ=255)
gCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGa > 1:9137564/1‑93 (MQ=255)
gCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGa < 2:1689909/93‑1 (MQ=255)
gCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGa < 1:5147251/93‑1 (MQ=255)
gTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATc > 2:7764182/1‑93 (MQ=255)
gTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATc < 1:4952013/93‑1 (MQ=255)
tACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATcc < 2:699624/93‑1 (MQ=255)
aCCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCg > 1:8059911/1‑93 (MQ=255)
cggaaaaaCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGtt < 2:4092811/89‑1 (MQ=255)
ccGTAAACCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATACCCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGtt < 2:4679440/93‑1 (MQ=255)
cGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTa > 1:4390568/1‑93 (MQ=255)
cGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTa < 1:8391372/93‑1 (MQ=255)
cGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTa > 1:4964121/1‑93 (MQ=255)
gTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTAt > 1:1588414/1‑93 (MQ=255)
tAAAGCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTAtt < 1:1342630/93‑1 (MQ=255)
tAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTAtt > 2:6092124/1‑93 (MQ=255)
aaaaaCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTAtt < 2:5473961/92‑1 (MQ=255)
aaaCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTa < 1:6690706/93‑1 (MQ=255)
aaCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTaa < 2:5159773/93‑1 (MQ=255)
aCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAAt > 2:9577674/1‑93 (MQ=255)
aCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAAt > 1:7955879/1‑93 (MQ=255)
aCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAAt < 2:2659004/93‑1 (MQ=255)
cAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATc > 2:2080988/1‑93 (MQ=255)
ggCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCct > 2:2355078/1‑93 (MQ=255)
cGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCctct < 1:2874506/93‑1 (MQ=255)
cGAAGACTTCGCCGCCGGGCTGCCACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCctct > 2:3445214/1‑93 (MQ=255)
gacgCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTa < 2:7580075/90‑1 (MQ=255)
gAACCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTa < 1:2164970/93‑1 (MQ=255)
aaGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTaa > 1:9059296/1‑93 (MQ=255)
aGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTaaa < 1:1479890/93‑1 (MQ=255)
ccTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTaaaaa > 2:7524270/1‑93 (MQ=255)
cTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAAc < 2:8084961/93‑1 (MQ=255)
ttCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACt > 2:7361394/1‑93 (MQ=255)
ttCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACt > 2:8481731/1‑93 (MQ=255)
ttCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACt > 1:3181411/1‑93 (MQ=255)
cgccgcCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTgg < 2:3622194/93‑1 (MQ=255)
gccgGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGtt > 1:176177/1‑93 (MQ=255)
gccgGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGtt < 1:3894244/93‑1 (MQ=255)
gccgGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGtt > 2:889487/1‑93 (MQ=255)
gccgGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGtt < 1:8500412/93‑1 (MQ=255)
ccgGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGttt < 1:8805359/93‑1 (MQ=255)
cgGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTg > 1:3551303/1‑93 (MQ=255)
ggCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCGCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGcc > 2:1008261/1‑93 (MQ=255)
ggCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGcc > 2:5875577/1‑93 (MQ=255)
ggCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGcc > 1:3631366/1‑93 (MQ=255)
cTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCaa < 2:1782539/93‑1 (MQ=255)
cTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCaa > 1:9924472/1‑93 (MQ=255)
|
AAGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGGCACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCAA > NC_000913/1040128‑1040307
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAAGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGGCACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCAACT > NC_000913/1040126‑1040309
|
AAAAGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACGGGCGAAGCCTTCGCCGCCGGGCTGAC < SRR4302540.7372514/94‑1 (MQ=60)
AAAAGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGAC > SRR4302540.10005151/1‑94 (MQ=60)
AAGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACAC < SRR4302540.148085/94‑1 (MQ=60)
CTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGAC > SRR4302540.6316084/1‑94 (MQ=60)
TGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACT < SRR4302540.6763424/94‑1 (MQ=60)
TGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACT > SRR4302540.7452615/1‑94 (MQ=60)
GCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTG < SRR4302540.1955442/94‑1 (MQ=60)
GCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCCGACTG > SRR4302540.969936/1‑94 (MQ=60)
CCCGCAGTCTGGTCAGGTCGCGATTATTTCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGT < SRR4302540.3395938/94‑1 (MQ=60)
CCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTG < SRR4302540.5324312/94‑1 (MQ=60)
CCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTG > SRR4302540.5967685/1‑94 (MQ=60)
CCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTG > SRR4302540.2319920/1‑94 (MQ=60)
GCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGAGGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCA < SRR4302540.5571297/94‑1 (MQ=60)
GCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCA < SRR4302540.1298446/94‑1 (MQ=60)
GCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCA > SRR4302540.9183909/1‑94 (MQ=60)
AGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAAT > SRR4302540.1170947/1‑94 (MQ=60)
GTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATA < SRR4302540.3521805/94‑1 (MQ=60)
TCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGGCACCTGACTGTGCAATAA < SRR4302540.4448623/94‑1 (MQ=60)
CTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAAC < SRR4302540.4739609/94‑1 (MQ=60)
tgggtAGGTCGCGATTATGTCGGATGTCGACGAGCATACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACC < SRR4302540.8460431/89‑1 (MQ=60)
TGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACC > SRR4302540.8352911/1‑94 (MQ=60)
GGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCG > SRR4302540.5802740/1‑94 (MQ=60)
GGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCG < SRR4302540.7984947/94‑1 (MQ=60)
CAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGCCTGTGCAATAACCGTAC > SRR4302540.5843269/1‑94 (MQ=60)
AGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACA < SRR4302540.967241/94‑1 (MQ=60)
GGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACAT < SRR4302540.480784/94‑1 (MQ=60)
CGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACC > SRR4302540.2093979/1‑94 (MQ=60)
CGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACC > SRR4302540.1141951/1‑94 (MQ=60)
CGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACC > SRR4302540.4208203/1‑94 (MQ=60)
GCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCC < SRR4302540.6466661/94‑1 (MQ=60)
GCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCC > SRR4302540.6190655/1‑94 (MQ=60)
CGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCA > SRR4302540.6253747/1‑94 (MQ=60)
ATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGG < SRR4302540.4778388/94‑1 (MQ=60)
ATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGG > SRR4302540.763232/1‑94 (MQ=60)
TATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCA > SRR4302540.968674/1‑94 (MQ=60)
tttgctgatttcacCGAGCGTACCCGTAAAACAGCCCAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAG < SRR4302540.2438329/80‑1 (MQ=60)
ATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTAAATACCCAGGCAG > SRR4302540.4457859/1‑94 (MQ=60)
CTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATAC < SRR4302540.3413798/94‑1 (MQ=60)
CTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATAC > SRR4302540.390832/1‑94 (MQ=60)
CTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATAC < SRR4302540.6220566/94‑1 (MQ=60)
TGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACG < SRR4302540.5972400/94‑1 (MQ=60)
TGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACG > SRR4302540.5518174/1‑94 (MQ=60)
TGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCCTACATAACCAGGCAGATAGG > SRR4302540.2137094/1‑94 (MQ=60)
ATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTC < SRR4302540.9347354/94‑1 (MQ=60)
ATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTC > SRR4302540.7791517/1‑94 (MQ=60)
TGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACTGTACATACCCAGGCAGATACGTCC > SRR4302540.4449967/1‑94 (MQ=60)
GTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCA < SRR4302540.3755018/94‑1 (MQ=60)
TCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAG < SRR4302540.4986134/94‑1 (MQ=60)
TCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAG < SRR4302540.193874/94‑1 (MQ=60)
ACGAGCGTCCCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCTGATACGTCCAGTCC < SRR4302540.8734738/94‑1 (MQ=60)
ACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCC < SRR4302540.704068/94‑1 (MQ=60)
GAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCG < SRR4302540.1074583/94‑1 (MQ=60)
GAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCG > SRR4302540.5065382/1‑94 (MQ=60)
GAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCA > SRR4302540.728545/1‑94 (MQ=60)
AGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGA > SRR4302540.9247361/1‑94 (MQ=60)
AGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGA > SRR4302540.910533/1‑94 (MQ=60)
GCGTACCCGTAAAACAGGCGAGGCCTGCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGAT < SRR4302540.4321670/94‑1 (MQ=60)
GCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGAT < SRR4302540.5203023/94‑1 (MQ=60)
GCGTACCCGTAAAACAGGCGAAGCCTGCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGAT < SRR4302540.5225655/94‑1 (MQ=60)
CGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATC < SRR4302540.1343427/94‑1 (MQ=60)
CGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATC > SRR4302540.8093621/1‑94 (MQ=60)
CGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATC > SRR4302540.3921495/1‑94 (MQ=60)
GTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCC < SRR4302540.5005513/94‑1 (MQ=60)
TACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCG > SRR4302540.8153478/1‑94 (MQ=60)
CCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTA > SRR4302540.5017809/1‑94 (MQ=60)
CCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTA > SRR4302540.5017808/1‑94 (MQ=60)
CCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTA > SRR4302540.4438214/1‑94 (MQ=60)
CGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTAT < SRR4302540.8488745/94‑1 (MQ=60)
CGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTAT > SRR4302540.1605768/1‑94 (MQ=60)
GTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATT > SRR4302540.5405076/1‑94 (MQ=60)
TAAAGCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTT < SRR4302540.1356701/94‑1 (MQ=60)
TAAAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTT < SRR4302540.3211892/94‑1 (MQ=60)
AACCAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAA < SRR4302540.3906618/94‑1 (MQ=60)
AAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAA < SRR4302540.6764574/94‑1 (MQ=60)
AAACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAA < SRR4302540.6764575/94‑1 (MQ=60)
AACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAAT > SRR4302540.8048618/1‑94 (MQ=60)
AACAGGCGAAGCCTTCGCCCCCGGGCTGACCCCGGACTGTGCAATAACCGaccaaccccagcgcgctcgttccagcccagactcgttctttaac > SRR4302540.8048619/1‑50 (MQ=28)
ACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATC > SRR4302540.9323565/1‑94 (MQ=60)
ACAGGCGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATC < SRR4302540.1760707/94‑1 (MQ=60)
CGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTA < SRR4302540.2905757/94‑1 (MQ=60)
CGAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCAAGTCCCGATCCGTTATTTAATCCTCTA > SRR4302540.282495/1‑94 (MQ=60)
GAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAA > SRR4302540.9168065/1‑94 (MQ=60)
GAAGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGAGACGTCGAGTCCCGATCCGCTATTCACTCCTCTAA > SRR4302540.6028555/1‑94 (MQ=60)
GAACCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAA < SRR4302540.2188288/94‑1 (MQ=60)
AGCCTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAA < SRR4302540.1496099/94‑1 (MQ=60)
CTTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACT > SRR4302540.3215977/1‑94 (MQ=60)
TTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTG > SRR4302540.10085321/1‑94 (MQ=60)
TTCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTG < SRR4302540.196225/94‑1 (MQ=60)
TCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGG < SRR4302540.4105067/94‑1 (MQ=60)
TCGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGG < SRR4302540.6282477/94‑1 (MQ=60)
CGCCGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGC > SRR4302540.8535564/1‑94 (MQ=60)
CGCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTT > SRR4302540.177934/1‑94 (MQ=60)
GCCGGGCTGACACCTGACTGTGCATTAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTT < SRR4302540.7000162/94‑1 (MQ=60)
GCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTT < SRR4302540.1513879/94‑1 (MQ=60)
GCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTT < SRR4302540.8599185/94‑1 (MQ=60)
GCCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTT < SRR4302540.3936515/94‑1 (MQ=60)
CCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTG > SRR4302540.3590105/1‑94 (MQ=60)
CCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTG < SRR4302540.8907152/94‑1 (MQ=60)
CCGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGAGTTTG > SRR4302540.3590107/1‑94 (MQ=60)
CGGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGC > SRR4302540.3749097/1‑94 (MQ=60)
GGGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCC > SRR4302540.3671115/1‑94 (MQ=60)
GGCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCA > SRR4302540.5686430/1‑94 (MQ=60)
GCTGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCAA > SRR4302540.10040345/1‑94 (MQ=60)
TGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCAACT > SRR4302540.3910456/1‑94 (MQ=60)
TGACACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCAACT > SRR4302540.10050904/1‑94 (MQ=60)
|
AAAAGGGCTGCCCGCAGTCTGGTCAGGTCGCGATTATTGCTGATGTCGACGAGCGTACCCGTAAAACAGGCGAAGCCTTCGCCGCCGGGCTGGCACCTGACTGTGCAATAACCGTACATACCCAGGCAGATACGTCCAGTCCCGATCCGTTATTTAATCCTCTAAAAACTGGCGTTTGCCAACT > NC_000913/1040126‑1040309
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
