Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,071,190	T→C	T65A (ACG→GCG)	b1010 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,071,190	0	T	C	100.0%	716.0 / NA	223	T65A (ACG→GCG)	b1010	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/113); total (110/113)

Only 100 of 249 total aligned reads displayed.

CGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGTCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAG  >  NC_000913/1071100‑1071279

cGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGcct                                                                                         <  1:4850221/93‑1 (MQ=255)

 ggCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGcctc                                                                                        <  1:2402248/93‑1 (MQ=255)

  gCGTTGATATCTTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGAATCTGTTGAAGGTCACATCCGCCATCTTGCCACCCGCCTTCTCg                                                                                       >  2:8976798/1‑93 (MQ=255)

   cGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGa                                                                                      <  1:7587279/93‑1 (MQ=255)

   cGTAGATTTCGTGAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCAGCGTGCCACCCGCCGCCTCGa                                                                                      <  2:9348321/93‑1 (MQ=255)

     tAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATc                                                                                    >  1:4966286/1‑93 (MQ=255)

     tAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATc                                                                                    >  1:6956608/1‑93 (MQ=255)

     tAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATc                                                                                    >  1:3491307/1‑93 (MQ=255)

       gATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCAc                                                                                  >  2:9081179/1‑93 (MQ=255)

        aTTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCAcc                                                                                 <  2:6062541/93‑1 (MQ=255)

        aTTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCAcc                                                                                 <  1:6776595/93‑1 (MQ=255)

          ttCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCtt                                                                               <  2:5847628/93‑1 (MQ=255)

          ttCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCtt                                                                               <  1:8814511/93‑1 (MQ=255)

            cGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGc                                                                             <  2:2828826/93‑1 (MQ=255)

             gTTAATCGCGGCGTAATTTTTCCAGTCGGTCATAAAGATGCTGTTGAAGGTCACATCCGCAATCGTGCCACCCGCCGCCTCGATCACCTTGCg                                                                            >  1:7558735/1‑93 (MQ=255)

             gTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCg                                                                            >  1:9004283/1‑93 (MQ=255)

               tAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGa                                                                          >  1:223064/1‑93 (MQ=255)

                 aTCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATa                                                                        <  1:7221081/93‑1 (MQ=255)

                  tCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAg                                                                       <  1:2980757/93‑1 (MQ=255)

                   cgcgGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGt                                                                      <  1:5761666/93‑1 (MQ=255)

                    gcggcgTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGtt                                                                     <  2:10039698/93‑1 (MQ=255)

                     cggcgTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGttt                                                                    >  2:3766322/1‑93 (MQ=255)

                     cggcgTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGttt                                                                    <  1:4283104/93‑1 (MQ=255)

                       gcgTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTcc                                                                  >  1:5172607/1‑93 (MQ=255)

                       gcgTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTcc                                                                  >  2:3153814/1‑93 (MQ=255)

                        cgTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGgttgct                                                                 >  2:6611082/1‑90 (MQ=255)

                         gTAATTTTTCCAGTCGGCAGTAAAAAAGCGGTTGAAGGATACATCCGCCATCGTGCCCCCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAg                                                                <  2:3472350/93‑1 (MQ=255)

                          tAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGa                                                               >  2:2569038/1‑93 (MQ=255)

                           aaTTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGaa                                                              <  2:6140046/93‑1 (MQ=255)

                           aaTTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGaa                                                              <  1:7341615/93‑1 (MQ=255)

                           aaTTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGaa                                                              <  2:1843754/93‑1 (MQ=255)

                           aaTTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGaa                                                              <  1:433850/93‑1 (MQ=255)

                            aTTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAAc                                                             <  2:7284219/93‑1 (MQ=255)

                            aTTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAAc                                                             <  1:3548781/93‑1 (MQ=255)

                            aTTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAAc                                                             <  1:7734203/93‑1 (MQ=255)

                             tttttCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACg                                                            <  2:6757506/93‑1 (MQ=255)

                               tttCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTg                                                          >  2:3908932/1‑93 (MQ=255)

                                ttCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTNCGGATAGGTTCGATAACGTgg                                                         >  1:7903774/1‑93 (MQ=255)

                                ttCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTgg                                                         <  1:9198356/93‑1 (MQ=255)

                                   cAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCgg                                                      >  1:5008682/1‑93 (MQ=255)

                                    aGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCggg                                                     <  1:6159068/93‑1 (MQ=255)

                                    aGTAGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCggg                                                     >  1:5818418/1‑93 (MQ=255)

                                     gTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGt                                                    >  1:4633136/1‑93 (MQ=255)

                                     gTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGt                                                    <  1:9864915/93‑1 (MQ=255)

                                      tCGGTACTAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGtt                                                   <  2:1027237/93‑1 (MQ=255)

                                      tCGGTAATAAATATTCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGtt                                                   <  2:5140125/93‑1 (MQ=255)

                                      tCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGtt                                                   <  1:4737005/93‑1 (MQ=255)

                                          taataaAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTGgcg                                               >  1:97772/1‑93 (MQ=255)

                                           aataaAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTgcgc                                              >  2:9779721/1‑93 (MQ=255)

                                             taaAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCt                                            >  1:1895019/1‑93 (MQ=255)

                                              aaaGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGccct                                           >  2:1364380/1‑91 (MQ=255)

                                               aaGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGTGCCttt                                          >  1:539037/1‑93 (MQ=255)

                                                aGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGTACGTGGCGGGTTTGGGCCTTTg                                         >  1:8921090/1‑93 (MQ=255)

                                                 gATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGGGCCttttg                                        >  2:7832628/1‑91 (MQ=255)

                                                  aTGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTggg                                       >  1:8597491/1‑93 (MQ=255)

                                                   tGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGt                                      <  1:3230122/93‑1 (MQ=255)

                                                   tGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGCGGTTGCGCCTTTtggc                                      >  2:6347581/1‑92 (MQ=255)

                                                    gCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTtgggc                                     >  1:2736104/1‑91 (MQ=255)

                                                     cTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGGCTTTGGGTCa                                    >  1:10004623/1‑93 (MQ=255)

                                                       tttGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATc                                  <  2:2663351/92‑1 (MQ=255)

                                                         tGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCgg                                >  2:7944691/1‑93 (MQ=255)

                                                          gAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGTGCCTTTTGGGCATCggg                               >  2:3674854/1‑92 (MQ=255)

                                                           aaGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCa                              <  1:1036861/93‑1 (MQ=255)

                                                           aaGGTCACATCCGCCATCGTGCCACCCGCCGCCGCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCa                              <  1:1403370/93‑1 (MQ=255)

                                                            aGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTGGGTCATCGGCaa                             >  2:1606882/1‑93 (MQ=255)

                                                               tCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACa                          <  2:9391074/93‑1 (MQ=255)

                                                               tCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACa                          >  2:2425777/1‑93 (MQ=255)

                                                                     ccGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGt                    <  2:8914649/93‑1 (MQ=255)

                                                                     ccGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGCTTTTGCCCTTGCGTCATCCGCAAACCGCACGt                    >  2:5449626/1‑93 (MQ=255)

                                                                      cGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGtt                   <  2:865303/93‑1 (MQ=255)

                                                                      cGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGTGCCTTTGGGTCATCGGCAAACAGCACGtt                   >  1:9161146/1‑93 (MQ=255)

                                                                       gCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGGCTTTGGGTGATCTGCCAACAGCACGtta                  >  2:4303517/1‑93 (MQ=255)

                                                                       gCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTGGGTCATCGGCAAACAGCACGtta                  >  2:8392370/1‑93 (MQ=255)

                                                                          ctCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGttatta               <  2:7363068/92‑1 (MQ=255)

                                                                          aTCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGttatta               <  1:4559007/93‑1 (MQ=255)

                                                                          aTCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGttatta               <  2:4680686/93‑1 (MQ=255)

                                                                          aTCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGttatta               >  1:8312822/1‑93 (MQ=255)

                                                                           tCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCCAACAGCACGTtattat              >  1:6637062/1‑93 (MQ=255)

                                                                           tCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTtattat              <  1:2425777/93‑1 (MQ=255)

                                                                           tCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTGGGTCATCGGCAAACAGCACGTtattat              >  2:1212595/1‑93 (MQ=255)

                                                                            cGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATg             <  1:7154222/93‑1 (MQ=255)

                                                                             gTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCCTTTGGGCATCGGCAAACAGCACGTTAATATGt            >  2:3767376/1‑93 (MQ=255)

                                                                             gTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGt            >  2:1463034/1‑93 (MQ=255)

                                                                              tGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGtt           <  2:4966285/93‑1 (MQ=255)

                                                                                ccACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGa         <  1:1663868/93‑1 (MQ=255)

                                                                                ccACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGa         <  1:4200814/93‑1 (MQ=255)

                                                                                 cACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGAt        <  1:9539374/93‑1 (MQ=255)

                                                                                 cACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTGGGTCATCGGTAAACAGCACGTTATTATGTTGAt        >  2:5516281/1‑93 (MQ=255)

                                                                                  ccccGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATc       <  1:3643188/92‑1 (MQ=255)

                                                                                  aCCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTTTGTTGAta       >  1:1006094/1‑92 (MQ=255)

                                                                                   cccGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCa      <  2:6992828/93‑1 (MQ=255)

                                                                                   cccGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCa      <  1:3317064/93‑1 (MQ=255)

                                                                                   cccGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCa      <  2:9299201/93‑1 (MQ=255)

                                                                                   cccGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCa      <  1:5969071/93‑1 (MQ=255)

                                                                                   cccGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTGCGCCTTTGGGTCATCGGCAAACAGCACGCTATTATGTTGATCa      >  2:4193909/1‑93 (MQ=255)

                                                                                    ccgccgCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCaa     <  1:3824315/93‑1 (MQ=255)

                                                                                    ccgccgCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCaa     <  1:8084616/93‑1 (MQ=255)

                                                                                      gccgccTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCaaaa   <  2:6893786/93‑1 (MQ=255)

                                                                                      gccgccTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCaaaa   <  2:828417/93‑1 (MQ=255)

                                                                                      gccgccTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCaaaa   <  1:6322241/93‑1 (MQ=255)

CGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGTCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAG  >  NC_000913/1071100‑1071279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTCGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGTCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAGCCA  >  NC_000913/1071098‑1071282

CTCGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCC                                                                                              >  SRR4302540.2162759/1‑94 (MQ=60)

  CGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTC                                                                                            <  SRR4302540.4902188/94‑1 (MQ=60)

   GGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCG                                                                                           <  SRR4302540.2428155/94‑1 (MQ=60)

   GGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCCCCTCG                                                                                           >  SRR4302540.7366078/1‑94 (MQ=60)

     CGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGAT                                                                                         <  SRR4302540.7672486/94‑1 (MQ=60)

      GTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATC                                                                                        <  SRR4302540.4032262/94‑1 (MQ=60)

      GTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATC                                                                                        >  SRR4302540.9909596/1‑94 (MQ=60)

      GTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATC                                                                                        >  SRR4302540.3529330/1‑94 (MQ=60)

      GTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATC                                                                                        >  SRR4302540.7034004/1‑94 (MQ=60)

      GTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATC                                                                                        >  SRR4302540.5020006/1‑94 (MQ=60)

         GATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACC                                                                                     >  SRR4302540.7287759/1‑94 (MQ=60)

         GATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACC                                                                                     >  SRR4302540.7459084/1‑94 (MQ=60)

          ATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCT                                                                                    <  SRR4302540.6851498/94‑1 (MQ=60)

          ATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCT                                                                                    <  SRR4302540.5448166/94‑1 (MQ=60)

           TTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTT                                                                                   >  SRR4302540.3151071/1‑94 (MQ=60)

            TTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTG                                                                                  <  SRR4302540.8916423/94‑1 (MQ=60)

             TCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGC                                                                                 >  SRR4302540.7056925/1‑94 (MQ=60)

              CGTTAATCGCGGCGTAATTTTTCCAGTCGGTCATAAAGATGCTGTTGAAGGTCACATCCGCAATCGTGCCACCCGCCGCCTCGATCACCTTGCG                                                                                >  SRR4302540.7643496/1‑94 (MQ=60)

              CGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCG                                                                                >  SRR4302540.9112308/1‑94 (MQ=60)

              CGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCG                                                                                >  SRR4302540.7643498/1‑94 (MQ=60)

               GTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGG                                                                               >  SRR4302540.912582/1‑94 (MQ=60)

               GTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGG                                                                               >  SRR4302540.3577111/1‑94 (MQ=60)

                TTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGA                                                                              >  SRR4302540.225224/1‑94 (MQ=60)

                   ATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAG                                                                           <  SRR4302540.2434595/94‑1 (MQ=60)

                   ATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAG                                                                           <  SRR4302540.7301570/94‑1 (MQ=60)

                   ATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAG                                                                           <  SRR4302540.7301571/94‑1 (MQ=60)

                    TCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGT                                                                          <  SRR4302540.6069131/94‑1 (MQ=60)

                    TCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGT                                                                          <  SRR4302540.3013673/94‑1 (MQ=60)

                     CGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTT                                                                         <  SRR4302540.5825281/94‑1 (MQ=60)

                     CGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTT                                                                         >  SRR4302540.1030821/1‑94 (MQ=60)

                      GCGGCTTAATTTTTCCAGTCGGTAATAAAGATGCTGGTGAAGGTCACATCCGCCATCGTGCCCCCCGCCGCCTCGATCACCTTGCGGATAGTTT                                                                        <  SRR4302540.4666432/94‑1 (MQ=60)

                      GCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTT                                                                        <  SRR4302540.5587709/94‑1 (MQ=60)

                      GCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTT                                                                        <  SRR4302540.4339391/94‑1 (MQ=60)

                       CGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTC                                                                       <  SRR4302540.4329691/94‑1 (MQ=60)

                        GGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCC                                                                      >  SRR4302540.5228903/1‑94 (MQ=60)

                        GGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCC                                                                      <  SRR4302540.4809791/94‑1 (MQ=60)

                            TAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAA                                                                  <  SRR4302540.8156752/94‑1 (MQ=60)

                             AATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAAC                                                                 <  SRR4302540.438437/94‑1 (MQ=60)

                             AATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAAC                                                                 <  SRR4302540.7423536/94‑1 (MQ=60)

                              ATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACG                                                                <  SRR4302540.7824496/94‑1 (MQ=60)

                              ATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACG                                                                <  SRR4302540.3587548/94‑1 (MQ=60)

                              ATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACG                                                                >  SRR4302540.4556134/1‑94 (MQ=60)

                                 TTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTNCGGATAGGTTCGATAACGTGG                                                             >  SRR4302540.7995951/1‑94 (MQ=60)

                                 TTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGG                                                             <  SRR4302540.9281654/94‑1 (MQ=60)

                                  TTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC                                                            <  SRR4302540.9308695/94‑1 (MQ=60)

                                   TCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑G                                                          >  SRR4302540.9141147/1‑94 (MQ=60)

                                    CCAGTCGGTAATAAAGATGCTGTTGAAGGTCGCATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GG                                                         <  SRR4302540.10141540/94‑1 (MQ=60)

                                    CCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GG                                                         <  SRR4302540.9746219/94‑1 (MQ=60)

                                    CCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GG                                                         >  SRR4302540.5062920/1‑94 (MQ=60)

                                     CAGTAGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGG                                                        >  SRR4302540.5882739/1‑94 (MQ=60)

                                      AGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGT                                                       <  SRR4302540.6227691/94‑1 (MQ=60)

                                      AGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGT                                                       <  SRR4302540.8779249/94‑1 (MQ=60)

                                      AGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGT                                                       >  SRR4302540.4682751/1‑94 (MQ=60)

                                       GTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTT                                                      <  SRR4302540.9980155/94‑1 (MQ=60)

                                        tcgagAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTT                                                     <  SRR4302540.5927097/89‑1 (MQ=60)

                                        TCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTT                                                     <  SRR4302540.4787569/94‑1 (MQ=60)

                                        TCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTT                                                     >  SRR4302540.2304545/1‑94 (MQ=60)

                                           GTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTGGCG                                                  >  SRR4302540.98807/1‑94 (MQ=60)

                                            TAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGTTTTGCGC                                                 >  SRR4302540.7957651/1‑94 (MQ=60)

                                            TAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGC                                                 >  SRR4302540.5028369/1‑94 (MQ=60)

                                            TAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGGTTCCAGAACGTGGC‑GGGGTTGCGC                                                 >  SRR4302540.5028368/1‑94 (MQ=60)

                                             AATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTTCGCC                                                >  SRR4302540.9503530/1‑94 (MQ=60)

                                              ATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCT                                               <  SRR4302540.3061638/94‑1 (MQ=60)

                                              ATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCT                                               >  SRR4302540.3518148/1‑94 (MQ=60)

                                              ATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCT                                               >  SRR4302540.1915757/1‑94 (MQ=60)

                                               TAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTT                                              <  SRR4302540.648184/94‑1 (MQ=60)

                                                AAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTT                                             <  SRR4302540.4892091/94‑1 (MQ=60)

                                                AAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTT                                             <  SRR4302540.4733413/94‑1 (MQ=60)

                                                AAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTT                                             <  SRR4302540.4373700/94‑1 (MQ=60)

                                                AAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGTGCCTTT                                             >  SRR4302540.544869/1‑94 (MQ=60)

                                                 AAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGTACGTGGC‑GGGTTTGGGCCTTTG                                            >  SRR4302540.9024496/1‑94 (MQ=60)

                                                 AAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTG                                            >  SRR4302540.2383444/1‑94 (MQ=60)

                                                  AGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTGG                                           >  SRR4302540.6428372/1‑94 (MQ=60)

                                                   GATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTGGG                                          >  SRR4302540.8697421/1‑94 (MQ=60)

                                                    ATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGCGGGGTTTGCG‑CTTTGGGT                                         >  SRR4302540.8167722/1‑94 (MQ=60)

                                                     TGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTC                                        <  SRR4302540.1236395/94‑1 (MQ=60)

                                                     TGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTC                                        <  SRR4302540.3265249/94‑1 (MQ=60)

                                                     TGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTtgggc                                        >  SRR4302540.2765637/1‑89 (MQ=60)

                                                      GCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGGCTTTGGGTCA                                       >  SRR4302540.10121152/1‑94 (MQ=60)

                                                       CTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTTGGTCAT                                      >  SRR4302540.5878253/1‑94 (MQ=60)

                                                        TGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATC                                     <  SRR4302540.6904812/94‑1 (MQ=60)

                                                         GTTGGAGGTCACAACCACCATGGCGCCACCCGCGGCGTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCG                                    <  SRR4302540.10051099/94‑1 (MQ=60)

                                                          GTGAAGGTCACATCCGCCATCGTGCCGCCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGG                                   <  SRR4302540.2588581/94‑1 (MQ=60)

                                                            GAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCA                                 <  SRR4302540.1441891/94‑1 (MQ=60)

                                                            GAAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTGGGTCATCGGCA                                 >  SRR4302540.8575728/1‑94 (MQ=60)

                                                             AAGGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAA                                <  SRR4302540.1047404/94‑1 (MQ=60)

                                                             AAGGTCACATCCGCCATCGTGCCACCCGCCGCCGCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAA                                <  SRR4302540.1418479/94‑1 (MQ=60)

                                                               GGTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAAC                              <  SRR4302540.8451723/94‑1 (MQ=60)

                                                                GTCACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTGGGTCATCGGCAAACA                             >  SRR4302540.248138/1‑94 (MQ=60)

                                                                 TCACATCCGCGATCGTGCCACCCGCCGCTTCGATCGCCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCTTTTGGGTCATCGGCAAACAG                            <  SRR4302540.6012473/94‑1 (MQ=60)

                                                                   ACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCA                          <  SRR4302540.7777779/94‑1 (MQ=60)

                                                                   ACATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCA                          <  SRR4302540.9876084/94‑1 (MQ=60)

                                                                    CATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCAC                         <  SRR4302540.701051/94‑1 (MQ=60)

                                                                     ATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGTGTCATCGGCAAACAGCACG                        >  SRR4302540.328690/1‑94 (MQ=60)

                                                                     ATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACG                        >  SRR4302540.4955621/1‑94 (MQ=60)

                                                                     ATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACG                        <  SRR4302540.3904208/94‑1 (MQ=60)

                                                                     ATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGGGCCCTTGGGGCATCGGCAAACAGagcg                        >  SRR4302540.3810099/1‑90 (MQ=60)

                                                                     ATCCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTGGGTCATCGGCAAACAGCACG                        >  SRR4302540.8196345/1‑94 (MQ=60)

                                                                       CCGCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGTGCCTTTGGGTCATCGGCAAACAGCACGTT                      >  SRR4302540.9271096/1‑94 (MQ=60)

                                                                         GCCATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTAT                    <  SRR4302540.3655189/94‑1 (MQ=60)

                                                                           CATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTT                  >  SRR4302540.1748935/1‑94 (MQ=60)

                                                                           CATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTA                  >  SRR4302540.8409316/1‑94 (MQ=60)

                                                                           CATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTA                  <  SRR4302540.5346567/94‑1 (MQ=60)

                                                                           CATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGATTGTGCCTTTGGGGCCTCCGCACACAGCACGTTAATA                  >  SRR4302540.1208352/1‑94 (MQ=60)

                                                                            ATCGTGCCCCCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTAT                 <  SRR4302540.4301835/94‑1 (MQ=60)

                                                                            ATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCCAACAGCACGTTATTAT                 >  SRR4302540.6710514/1‑94 (MQ=60)

                                                                            ATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTAT                 <  SRR4302540.4608277/94‑1 (MQ=60)

                                                                            ATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTAT                 <  SRR4302540.3626692/94‑1 (MQ=60)

                                                                            ATCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTAT                 <  SRR4302540.3420297/94‑1 (MQ=60)

                                                                             TCGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATG                <  SRR4302540.2451910/94‑1 (MQ=60)

                                                                              CGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGT               <  SRR4302540.7233953/94‑1 (MQ=60)

                                                                              CGTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGT               <  SRR4302540.2989399/94‑1 (MQ=60)

                                                                               GTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTT              <  SRR4302540.8986224/94‑1 (MQ=60)

                                                                               GTGCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTGGGTCATCGGCAAACAGCACGGTATTATGTT              >  SRR4302540.750148/1‑94 (MQ=60)

                                                                                TGCCCCCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTG             <  SRR4302540.8925587/94‑1 (MQ=60)

                                                                                 GCCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGA            <  SRR4302540.5828178/94‑1 (MQ=60)

                                                                                  CCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGAT           <  SRR4302540.7736153/94‑1 (MQ=60)

                                                                                  CCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGAT           <  SRR4302540.4246521/94‑1 (MQ=60)

                                                                                  CCACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGAT           <  SRR4302540.1681987/94‑1 (MQ=60)

                                                                                   CACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTTTGTTGATA          >  SRR4302540.1016298/1‑94 (MQ=60)

                                                                                   CACCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATC          <  SRR4302540.9652268/94‑1 (MQ=60)

                                                                                    CCCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCA         <  SRR4302540.3683089/94‑1 (MQ=60)

                                                                                     CCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCTGCAAACAGCACGTTATTATGTTGATCAA        >  SRR4302540.1686466/1‑94 (MQ=60)

                                                                                     CCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAA        <  SRR4302540.10035307/94‑1 (MQ=60)

                                                                                     CCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAA        <  SRR4302540.6035133/94‑1 (MQ=60)

                                                                                     CCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAA        <  SRR4302540.3353436/94‑1 (MQ=60)

                                                                                     CCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAA        <  SRR4302540.5136430/94‑1 (MQ=60)

                                                                                     CCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTCGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAA        <  SRR4302540.6035134/94‑1 (MQ=60)

                                                                                     CCCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGCTTGCGCCTTTGGGTCAACGGCAACCAGCACCGTATTATGTTGATtga        >  SRR4302540.4626244/1‑91 (MQ=60)

                                                                                      CCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAA       <  SRR4302540.9055674/94‑1 (MQ=60)

                                                                                      CCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAA       <  SRR4302540.3865932/94‑1 (MQ=60)

                                                                                      CCGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAA       <  SRR4302540.8178447/94‑1 (MQ=60)

                                                                                       CGCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAA      <  SRR4302540.6737070/94‑1 (MQ=60)

                                                                                        GCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTTGGGTATCGGCAAACAGCACGGTATTATGTTTATCAAAAG     >  SRR4302540.208061/1‑94 (MQ=60)

                                                                                        GCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAG     <  SRR4302540.6392646/94‑1 (MQ=60)

                                                                                        GCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAG     <  SRR4302540.6392645/94‑1 (MQ=60)

                                                                                        GCCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCCTTGGGGCCTTGGCACACAGCCCGTTATTATGgttctcacaac     >  SRR4302540.308735/1‑83 (MQ=57)

                                                                                         CCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGGGCCTTTGGGGCATCGGGCAACAGCAAGTTATTttaatgataaaaaac    >  SRR4302540.4409236/1‑79 (MQ=60)

                                                                                         CCGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAGC    >  SRR4302540.3168689/1‑94 (MQ=60)

                                                                                          CGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAGCC   <  SRR4302540.4959378/94‑1 (MQ=60)

                                                                                          CGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGGTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAGCC   >  SRR4302540.9767477/1‑94 (MQ=60)

                                                                                          CGCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGCTTTGCGCCCTTGGGGGATCGGTACACAGCACGGTATTATGTTtatcataaaac   >  SRR4302540.4033583/1‑83 (MQ=49)

                                                                                           GCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAGCCA  >  SRR4302540.1418999/1‑94 (MQ=60)

                                                                                           GCCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAGCCA  <  SRR4302540.6435736/94‑1 (MQ=60)

CTCGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGGTAATAAAGATGCTGTTGAAGGTCACATCCGCCATCGTGCCACCCGCCGTCTCGATCACCTTGCGGATAGTTTCCAGAACGTGGC‑GGGTTTGCGCCTTTGGGTCATCGGCAAACAGCACGTTATTATGTTGATCAAAAGCCA  >  NC_000913/1071098‑1071282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`